Wall clock time and date at job start Mon Mar 30 2020 01:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00037 * 2 1 4 4 C 1.50698 * 109.47169 * 71.72433 * 3 2 1 5 5 H 1.08002 * 120.00426 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00208 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00038 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99958 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47126 * 60.00112 * 8 6 4 10 10 H 1.48500 * 109.46787 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47085 * 299.99435 * 8 6 4 12 12 C 1.46899 * 111.00141 * 236.04743 * 2 1 3 13 13 H 1.08993 * 109.30323 * 179.74215 * 12 2 1 14 14 C 1.53185 * 109.30428 * 60.14413 * 12 2 1 15 15 C 1.52933 * 108.21547 * 193.02586 * 14 12 2 16 16 H 1.09008 * 109.31673 * 308.02846 * 15 14 12 17 17 C 1.52761 * 110.90231 * 187.28305 * 15 14 12 18 18 C 1.53201 * 108.87657 * 179.42702 * 17 15 14 19 19 C 1.53135 * 110.02132 * 59.42683 * 18 17 15 20 20 C 1.53198 * 109.83127 * 301.15491 * 19 18 17 21 21 C 1.52714 * 108.99468 * 59.26325 * 20 19 18 22 22 H 1.09001 * 108.75375 * 57.56238 * 21 20 19 23 23 N 1.45375 * 111.69388 * 176.74244 * 21 20 19 24 24 C 1.33633 * 123.18592 * 144.14610 * 23 21 20 25 25 O 1.21282 * 118.04872 * 176.21721 * 24 23 21 26 26 H 1.09000 * 109.46971 * 183.95257 * 1 2 3 27 27 H 1.09004 * 109.47377 * 303.95393 * 1 2 3 28 28 H 1.09003 * 109.47116 * 63.95389 * 1 2 3 29 29 H 1.08999 * 109.47319 * 191.72011 * 3 2 1 30 30 H 1.08997 * 109.47292 * 311.72228 * 3 2 1 31 31 H 0.97006 * 120.00325 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.71016 * 73.34649 * 14 12 2 33 33 H 1.08998 * 109.74677 * 312.72984 * 14 12 2 34 34 H 1.08998 * 109.56910 * 299.24503 * 17 15 14 35 35 H 1.09002 * 109.57340 * 59.49144 * 17 15 14 36 36 H 1.08997 * 109.39096 * 179.57568 * 18 17 15 37 37 H 1.09000 * 109.38933 * 299.37978 * 18 17 15 38 38 H 1.08997 * 109.55295 * 180.98383 * 19 18 17 39 39 H 1.09004 * 109.36226 * 61.20210 * 19 18 17 40 40 H 1.09009 * 109.56506 * 299.37973 * 20 19 18 41 41 H 1.09004 * 109.57265 * 179.15150 * 20 19 18 42 42 H 0.97000 * 118.40860 * 324.14212 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7595 2.0000 1.3491 5 1 1.2681 1.4370 2.1288 6 6 2.1711 3.2941 1.5882 7 7 2.7700 3.9796 0.6391 8 14 1.8779 4.0735 3.2604 9 1 2.5705 3.2779 4.3056 10 1 2.4103 5.4598 3.2604 11 1 0.4207 4.1024 3.5444 12 6 1.9955 -0.7659 -1.1376 13 1 3.0849 -0.7441 -1.1134 14 6 1.5051 -0.1340 -2.4440 15 6 1.7831 -1.1152 -3.5836 16 1 2.8292 -1.4199 -3.5500 17 6 1.4832 -0.4763 -4.9383 18 6 1.7903 -1.4913 -6.0440 19 6 0.9329 -2.7463 -5.8565 20 6 1.2135 -3.3672 -4.4844 21 6 0.8896 -2.3424 -3.3994 22 1 -0.1513 -2.0370 -3.5054 23 7 1.0632 -2.8974 -2.0670 24 6 1.5254 -2.1875 -1.0335 25 8 1.5674 -2.7238 0.0535 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3634 0.5740 0.8524 28 1 -0.3633 0.4513 -0.9233 29 1 3.0650 1.3500 -0.2087 30 1 1.4872 1.9557 -0.7670 31 1 3.0599 4.8899 0.8074 32 1 2.0387 0.7993 -2.6239 33 1 0.4346 0.0611 -2.3796 34 1 0.4314 -0.1938 -4.9839 35 1 2.1051 0.4091 -5.0702 36 1 1.5719 -1.0463 -7.0147 37 1 2.8442 -1.7658 -6.0006 38 1 1.1699 -3.4699 -6.6364 39 1 -0.1213 -2.4770 -5.9230 40 1 2.2647 -3.6483 -4.4190 41 1 0.5903 -4.2512 -4.3493 42 1 0.8323 -3.8281 -1.9211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595344107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:48 Heat of formation + Delta-G solvation = -70.574712 kcal Electronic energy + Delta-G solvation = -21432.227726 eV Core-core repulsion = 18410.182359 eV Total energy + Delta-G solvation = -3022.045367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.00637 -39.29182 -38.22946 -35.42543 -34.85356 -33.44237 -30.46315 -30.01845 -29.03220 -26.70472 -25.33907 -23.59650 -23.17412 -22.37448 -20.87929 -19.92812 -18.59796 -17.98721 -17.41700 -17.02606 -16.37998 -16.00525 -15.68085 -15.47923 -15.15723 -14.98754 -14.77531 -14.47294 -14.17637 -13.82744 -13.59656 -13.14125 -12.96581 -12.86683 -12.73503 -12.55973 -12.51021 -12.44278 -12.28368 -11.98430 -11.84550 -11.43872 -11.41502 -11.37565 -11.09918 -10.64054 -10.57771 -10.03688 -8.98663 -8.20213 -6.29880 1.40644 1.44036 1.51442 1.57309 2.20011 2.41695 3.11415 3.24270 3.46884 3.54327 3.63305 3.81216 4.08913 4.16377 4.28475 4.34581 4.37088 4.40931 4.46518 4.51581 4.54208 4.57484 4.82886 4.91013 4.98056 4.99126 5.06420 5.16214 5.20642 5.22133 5.27523 5.28191 5.33929 5.38541 5.58095 5.63195 5.90244 6.02843 6.23064 6.27385 6.56137 6.83676 7.25905 7.39197 8.89749 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030239 B = 0.004891 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.720818 B = 5723.381086 C = 6385.610456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.537 5.537 3 C 0.216 3.784 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.268 1.268 12 C 0.072 3.928 13 H 0.092 0.908 14 C -0.143 4.143 15 C -0.089 4.089 16 H 0.075 0.925 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.120 4.120 21 C 0.142 3.858 22 H 0.075 0.925 23 N -0.704 5.704 24 C 0.530 3.470 25 O -0.581 6.581 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.004 0.996 30 H -0.018 1.018 31 H 0.266 0.734 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 -12.752 -17.414 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.261 5.261 3 C 0.091 3.909 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.570 5.570 8 Si 0.791 3.209 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.193 1.193 12 C -0.040 4.040 13 H 0.110 0.890 14 C -0.182 4.182 15 C -0.109 4.109 16 H 0.094 0.906 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.158 4.158 21 C 0.038 3.962 22 H 0.093 0.907 23 N -0.356 5.356 24 C 0.316 3.684 25 O -0.460 6.460 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.022 0.978 30 H 0.000 1.000 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.404 -12.863 -16.471 21.358 hybrid contribution -0.134 0.838 0.462 0.966 sum -4.538 -12.025 -16.009 20.530 Atomic orbital electron populations 1.22199 0.87682 1.00213 1.00553 1.62004 1.08226 1.16052 1.39777 1.19344 0.93409 0.82512 0.95662 1.21420 1.38517 0.98090 0.98719 0.92738 1.25805 0.94737 0.97469 1.01016 1.70045 1.40914 1.11291 1.34723 0.85489 0.78827 0.77254 0.79364 1.19867 1.20360 1.19279 1.21638 1.00635 0.90648 0.91117 0.88987 1.22290 1.02215 0.99645 0.94070 1.21341 1.00212 0.94163 0.95136 0.90622 1.21503 1.02329 0.98510 0.92166 1.21612 1.00380 0.95377 0.98238 1.21531 1.00616 0.97104 0.95656 1.21815 1.02822 0.97526 0.93668 1.21055 0.99683 0.94303 0.81181 0.90704 1.45508 1.65602 1.15072 1.09466 1.20087 0.76196 0.88483 0.83623 1.90699 1.56102 1.71039 1.28114 0.92671 0.92263 0.94986 0.97830 1.00040 0.92557 0.91704 0.91013 0.91161 0.91641 0.90484 0.91851 0.89873 0.91086 0.91256 0.89750 0.75794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 8.78 127.69 1.12 2.88 16 2 N -0.54 -25.26 4.45 -906.83 -4.04 -29.30 16 3 C 0.22 11.74 4.02 85.56 0.34 12.09 16 4 C -0.53 -31.16 8.53 25.60 0.22 -30.94 16 5 H 0.05 3.24 7.51 -2.91 -0.02 3.22 16 6 C 0.01 0.47 5.46 84.66 0.46 0.94 16 7 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 8 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.07 2.75 2.40 44.04 0.11 2.85 16 13 H 0.09 3.70 7.99 -2.39 -0.02 3.68 16 14 C -0.14 -4.41 3.98 30.63 0.12 -4.29 16 15 C -0.09 -1.94 1.93 -10.93 -0.02 -1.96 16 16 H 0.08 1.70 8.11 -2.38 -0.02 1.68 16 17 C -0.11 -1.82 5.33 30.58 0.16 -1.66 16 18 C -0.12 -1.44 5.91 30.71 0.18 -1.26 16 19 C -0.11 -1.11 5.93 30.71 0.18 -0.92 16 20 C -0.12 -1.49 5.59 30.57 0.17 -1.32 16 21 C 0.14 2.66 2.71 45.08 0.12 2.78 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 N -0.70 -17.48 5.24 -447.59 -2.34 -19.82 16 24 C 0.53 18.91 6.00 87.64 0.53 19.43 16 25 O -0.58 -25.93 17.26 -3.04 -0.05 -25.98 16 26 H 0.05 2.19 6.94 -2.39 -0.02 2.17 16 27 H 0.06 2.67 7.18 -2.39 -0.02 2.66 16 28 H 0.03 1.23 6.05 -2.39 -0.01 1.21 16 29 H 0.00 0.21 7.90 -2.39 -0.02 0.19 16 30 H -0.02 -1.01 7.48 -2.39 -0.02 -1.03 16 31 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 32 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 33 H 0.07 2.24 5.81 -2.39 -0.01 2.22 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.40 8.66 8.71 -92.71 -0.81 7.86 16 Total: -1.00 -71.22 320.51 -0.24 -71.45 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.19 Total: 13.17 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 3.70 Total: -1.39 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -6.10 Total: -104.66 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.22 -0.24 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595344107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.877 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds