Wall clock time and date at job start Mon Mar 30 2020 00:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47085 * 2 1 4 4 C 1.46766 * 124.35008 * 89.99916 * 3 2 1 5 5 C 1.54482 * 105.47489 * 162.96400 * 4 3 2 6 6 C 1.54629 * 101.76145 * 25.41324 * 5 4 3 7 7 H 1.08999 * 110.47993 * 94.01685 * 6 5 4 8 8 N 1.46898 * 110.48515 * 216.52009 * 6 5 4 9 9 C 1.46844 * 111.00455 * 297.85954 * 8 6 5 10 10 C 1.53040 * 109.52562 * 185.83987 * 9 8 6 11 11 C 1.53122 * 109.27620 * 300.82205 * 10 9 8 12 12 C 1.50694 * 109.52441 * 177.55944 * 11 10 9 13 13 H 1.08001 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00183 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99948 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47223 * 60.00507 * 16 14 12 18 18 H 1.48508 * 109.46782 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47393 * 299.99921 * 16 14 12 20 20 C 1.53121 * 109.16469 * 57.65180 * 11 10 9 21 21 C 1.46849 * 110.99767 * 62.07195 * 8 6 5 22 22 C 1.34421 * 124.35097 * 269.97864 * 3 2 1 23 23 O 1.21284 * 124.93580 * 0.42401 * 22 3 2 24 24 H 1.09000 * 109.46977 * 60.00054 * 1 2 3 25 25 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47033 * 299.99923 * 1 2 3 27 27 H 1.09001 * 109.47033 * 240.00077 * 2 1 3 28 28 H 1.09000 * 109.46977 * 119.99946 * 2 1 3 29 29 H 1.09004 * 110.24372 * 43.96181 * 4 3 2 30 30 H 1.09000 * 110.32162 * 282.00676 * 4 3 2 31 31 H 1.09000 * 110.96409 * 267.29874 * 5 4 3 32 32 H 1.08993 * 110.96709 * 143.53494 * 5 4 3 33 33 H 1.09000 * 109.46106 * 65.82095 * 9 8 6 34 34 H 1.09004 * 109.46002 * 305.85433 * 9 8 6 35 35 H 1.08997 * 109.50161 * 180.88121 * 10 9 8 36 36 H 1.09002 * 109.50363 * 60.75547 * 10 9 8 37 37 H 1.09005 * 109.52334 * 297.74717 * 11 10 9 38 38 H 0.96997 * 120.00128 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.50131 * 62.28245 * 20 11 10 40 40 H 1.08998 * 109.50520 * 182.36624 * 20 11 10 41 41 H 1.08999 * 109.46649 * 54.13875 * 21 8 6 42 42 H 1.09004 * 109.45781 * 294.17563 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1749 3.3439 0.7488 6 6 2.7702 3.4751 -0.7378 7 1 1.9771 4.2138 -0.8534 8 7 3.9338 3.8395 -1.5571 9 6 4.4720 5.1455 -1.1557 10 6 5.5864 5.5578 -2.1202 11 6 6.6929 4.4996 -2.0962 12 6 7.7652 4.8697 -3.0882 13 1 7.6681 5.7693 -3.6779 14 6 8.8702 4.0597 -3.2431 15 7 8.9882 2.9640 -2.5254 16 14 10.1991 4.5181 -4.4733 17 1 10.7712 5.8407 -4.1142 18 1 11.2722 3.4919 -4.4481 19 1 9.6108 4.5865 -5.8350 20 6 6.0964 3.1400 -2.4708 21 6 4.9672 2.7979 -1.4962 22 6 2.2716 2.0962 -1.1098 23 8 2.1220 1.6941 -2.2442 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8321 1.5530 1.9385 30 1 1.3644 2.5311 1.6442 31 1 4.2335 3.1027 0.8451 32 1 2.9312 4.2515 1.3010 33 1 4.8734 5.0776 -0.1446 34 1 3.6759 5.8896 -1.1812 35 1 5.9961 6.5199 -1.8128 36 1 5.1826 5.6392 -3.1294 37 1 7.1234 4.4454 -1.0963 38 1 9.7658 2.3944 -2.6341 39 1 5.7006 3.1835 -3.4855 40 1 6.8707 2.3750 -2.4146 41 1 4.5308 1.8370 -1.7688 42 1 5.3662 2.7411 -0.4834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595428092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:05 Heat of formation + Delta-G solvation = -32.329324 kcal Electronic energy + Delta-G solvation = -21366.437610 eV Core-core repulsion = 18346.050687 eV Total energy + Delta-G solvation = -3020.386922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71213 -37.83688 -36.25266 -34.45934 -32.73089 -30.96523 -29.80894 -28.82280 -27.13052 -25.00507 -23.55006 -22.51983 -22.13427 -20.83729 -19.04009 -18.38716 -16.76228 -16.54895 -16.27827 -15.65007 -14.59879 -14.39289 -14.23219 -14.06719 -13.73298 -13.55997 -13.37660 -12.80883 -12.72876 -12.54278 -12.21854 -12.12310 -11.96909 -11.59997 -11.43828 -11.27573 -11.09293 -10.87439 -10.72381 -10.49555 -10.16442 -9.97017 -9.48860 -9.37707 -8.93726 -8.74332 -8.66221 -8.24946 -7.73494 -5.93167 -3.98215 2.73037 2.97430 3.36456 3.40699 3.43889 4.19514 4.40971 4.49191 4.70123 4.84249 4.91706 5.01357 5.07198 5.21195 5.36852 5.37721 5.47601 5.54337 5.69512 5.72671 5.74011 5.82496 5.89311 5.98586 6.15309 6.24547 6.32290 6.56307 6.64707 6.65099 6.87999 7.07321 7.13701 7.19015 7.46317 7.60732 7.66917 7.85290 8.09204 8.19451 8.36218 8.52783 9.05060 9.65988 11.13143 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.004640 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.882213 B = 6032.653689 C = 6346.008886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.626 5.626 4 C 0.109 3.891 5 C -0.173 4.173 6 C 0.054 3.946 7 H 0.111 0.889 8 N -0.511 5.511 9 C 0.061 3.939 10 C -0.107 4.107 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.102 4.102 21 C 0.055 3.945 22 C 0.527 3.473 23 O -0.510 6.510 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.259 0.741 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 -2.691 10.586 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.363 5.363 4 C -0.014 4.014 5 C -0.212 4.212 6 C -0.058 4.058 7 H 0.129 0.871 8 N -0.235 5.235 9 C -0.066 4.066 10 C -0.145 4.145 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.140 4.140 21 C -0.072 4.072 22 C 0.313 3.687 23 O -0.384 6.384 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.817 -3.101 9.481 17.862 hybrid contribution 0.948 0.066 0.371 1.020 sum -13.869 -3.035 9.852 17.281 Atomic orbital electron populations 1.22158 0.96003 1.02136 1.02346 1.21301 0.94141 0.81364 1.03095 1.48318 1.66912 1.13659 1.07407 1.21974 0.99096 0.92936 0.87437 1.23351 1.01593 0.98579 0.97709 1.22483 0.96850 0.95525 0.90970 0.87115 1.62051 1.06798 1.03619 1.51066 1.22148 0.97454 0.89352 0.97630 1.21693 0.95275 0.99397 0.98123 1.18682 0.91283 0.90274 0.96749 1.21172 1.03933 1.07996 1.21786 0.92770 1.24961 0.98035 0.95049 0.95918 1.69862 1.29242 1.13484 1.40608 0.86693 0.81482 0.77999 0.82014 1.20397 1.21402 1.20281 1.21650 0.94323 1.01873 0.96202 1.22363 0.92785 0.93025 0.99034 1.20689 0.76484 0.87201 0.84306 1.90713 1.51935 1.74732 1.20980 0.92201 0.91583 0.92605 0.90033 0.90563 0.90683 0.91389 0.89181 0.89289 0.95329 0.92243 0.92983 0.92323 0.96175 0.93082 0.93651 0.88955 0.92597 0.95703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 37.16 0.38 -1.11 16 2 C 0.12 1.28 6.65 -4.04 -0.03 1.26 16 3 N -0.63 -7.85 2.93 -172.41 -0.51 -8.36 16 4 C 0.11 1.05 7.35 -3.12 -0.02 1.02 16 5 C -0.17 -1.97 5.50 -25.10 -0.14 -2.11 16 6 C 0.05 0.81 3.13 -67.73 -0.21 0.60 16 7 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 8 N -0.51 -9.47 4.72 -226.70 -1.07 -10.54 16 9 C 0.06 1.08 5.11 -3.83 -0.02 1.06 16 10 C -0.11 -2.25 5.32 -26.65 -0.14 -2.40 16 11 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 12 C -0.51 -14.22 8.56 -34.44 -0.29 -14.52 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 15 N -0.89 -25.75 11.37 55.43 0.63 -25.12 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.10 -2.52 5.12 -26.65 -0.14 -2.66 16 21 C 0.05 1.14 4.83 -3.83 -0.02 1.12 16 22 C 0.53 8.62 5.97 -10.86 -0.06 8.56 16 23 O -0.51 -10.49 17.18 5.55 0.10 -10.40 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.20 5.86 -51.93 -0.30 0.90 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.48 7.31 -51.93 -0.38 0.10 16 34 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 2.52 6.17 -51.93 -0.32 2.20 16 41 H 0.06 1.20 6.43 -51.93 -0.33 0.87 16 42 H 0.02 0.50 6.31 -51.93 -0.33 0.17 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -31.71 324.20 -9.09 -40.80 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.11 Total: -1.32 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.99 Total: -6.55 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.94 Total: -44.02 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.10 Total: -10.40 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.71 -9.09 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595428092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.470 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds