Wall clock time and date at job start Mon Mar 30 2020 00:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47085 * 2 1 4 4 C 1.46766 * 124.35008 * 89.99916 * 3 2 1 5 5 C 1.54482 * 105.47489 * 162.96400 * 4 3 2 6 6 C 1.54629 * 101.76145 * 25.41324 * 5 4 3 7 7 H 1.08999 * 110.47993 * 94.01685 * 6 5 4 8 8 N 1.46898 * 110.48515 * 216.52009 * 6 5 4 9 9 C 1.46844 * 111.00455 * 297.85954 * 8 6 5 10 10 C 1.53040 * 109.52562 * 185.83987 * 9 8 6 11 11 C 1.53122 * 109.27620 * 300.82205 * 10 9 8 12 12 C 1.50694 * 109.52441 * 177.55944 * 11 10 9 13 13 H 1.08001 * 119.99995 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00183 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99948 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47223 * 60.00507 * 16 14 12 18 18 H 1.48508 * 109.46782 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47393 * 299.99921 * 16 14 12 20 20 C 1.53121 * 109.16469 * 57.65180 * 11 10 9 21 21 C 1.46849 * 110.99767 * 62.07195 * 8 6 5 22 22 C 1.34421 * 124.35097 * 269.97864 * 3 2 1 23 23 O 1.21284 * 124.93580 * 0.42401 * 22 3 2 24 24 H 1.09000 * 109.46977 * 60.00054 * 1 2 3 25 25 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47033 * 299.99923 * 1 2 3 27 27 H 1.09001 * 109.47033 * 240.00077 * 2 1 3 28 28 H 1.09000 * 109.46977 * 119.99946 * 2 1 3 29 29 H 1.09004 * 110.24372 * 43.96181 * 4 3 2 30 30 H 1.09000 * 110.32162 * 282.00676 * 4 3 2 31 31 H 1.09000 * 110.96409 * 267.29874 * 5 4 3 32 32 H 1.08993 * 110.96709 * 143.53494 * 5 4 3 33 33 H 1.09000 * 109.46106 * 65.82095 * 9 8 6 34 34 H 1.09004 * 109.46002 * 305.85433 * 9 8 6 35 35 H 1.08997 * 109.50161 * 180.88121 * 10 9 8 36 36 H 1.09002 * 109.50363 * 60.75547 * 10 9 8 37 37 H 1.09005 * 109.52334 * 297.74717 * 11 10 9 38 38 H 0.96997 * 120.00128 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.50131 * 62.28245 * 20 11 10 40 40 H 1.08998 * 109.50520 * 182.36624 * 20 11 10 41 41 H 1.08999 * 109.46649 * 54.13875 * 21 8 6 42 42 H 1.09004 * 109.45781 * 294.17563 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1749 3.3439 0.7488 6 6 2.7702 3.4751 -0.7378 7 1 1.9771 4.2138 -0.8534 8 7 3.9338 3.8395 -1.5571 9 6 4.4720 5.1455 -1.1557 10 6 5.5864 5.5578 -2.1202 11 6 6.6929 4.4996 -2.0962 12 6 7.7652 4.8697 -3.0882 13 1 7.6681 5.7693 -3.6779 14 6 8.8702 4.0597 -3.2431 15 7 8.9882 2.9640 -2.5254 16 14 10.1991 4.5181 -4.4733 17 1 10.7712 5.8407 -4.1142 18 1 11.2722 3.4919 -4.4481 19 1 9.6108 4.5865 -5.8350 20 6 6.0964 3.1400 -2.4708 21 6 4.9672 2.7979 -1.4962 22 6 2.2716 2.0962 -1.1098 23 8 2.1220 1.6941 -2.2442 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8321 1.5530 1.9385 30 1 1.3644 2.5311 1.6442 31 1 4.2335 3.1027 0.8451 32 1 2.9312 4.2515 1.3010 33 1 4.8734 5.0776 -0.1446 34 1 3.6759 5.8896 -1.1812 35 1 5.9961 6.5199 -1.8128 36 1 5.1826 5.6392 -3.1294 37 1 7.1234 4.4454 -1.0963 38 1 9.7658 2.3944 -2.6341 39 1 5.7006 3.1835 -3.4855 40 1 6.8707 2.3750 -2.4146 41 1 4.5308 1.8370 -1.7688 42 1 5.3662 2.7411 -0.4834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595428092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:05 Heat of formation + Delta-G solvation = -53.674235 kcal Electronic energy + Delta-G solvation = -21367.363194 eV Core-core repulsion = 18346.050687 eV Total energy + Delta-G solvation = -3021.312507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87698 -39.36537 -37.46086 -36.00574 -34.21836 -32.54351 -31.51516 -29.85342 -28.52250 -26.72052 -24.44833 -23.97559 -23.79632 -22.22902 -20.18495 -20.08424 -18.45744 -17.76021 -17.65560 -16.94412 -16.51898 -15.72757 -15.40439 -15.27578 -15.05458 -14.76476 -14.50278 -14.46313 -14.21889 -13.87931 -13.78690 -13.27388 -13.01306 -12.91190 -12.79189 -12.68720 -12.58257 -12.40617 -12.24649 -12.04388 -11.97830 -11.73404 -11.34081 -10.85306 -10.80827 -10.58951 -10.37993 -9.71484 -9.13613 -8.08022 -6.21032 1.40710 1.42918 1.49973 1.51724 2.02633 2.44010 2.94553 3.19053 3.36773 3.71439 3.92839 4.02133 4.11239 4.21304 4.23505 4.29127 4.39012 4.48246 4.49233 4.65145 4.66931 4.76441 4.82576 4.85204 4.92477 4.95138 5.00506 5.04176 5.16150 5.22802 5.26678 5.32319 5.55738 5.61115 5.65485 5.97063 5.98391 6.07172 6.22625 6.30467 6.41065 6.90438 7.19901 7.46628 8.96527 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.004640 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.882213 B = 6032.653689 C = 6346.008886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.621 5.621 4 C 0.108 3.892 5 C -0.163 4.163 6 C 0.051 3.949 7 H 0.133 0.867 8 N -0.531 5.531 9 C 0.069 3.931 10 C -0.102 4.102 11 C 0.047 3.953 12 C -0.535 4.535 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.952 3.048 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.276 1.276 20 C -0.093 4.093 21 C 0.077 3.923 22 C 0.513 3.487 23 O -0.569 6.569 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.044 0.956 37 H -0.003 1.003 38 H 0.260 0.740 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 -1.782 12.876 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.006 4.006 3 N -0.355 5.355 4 C -0.014 4.014 5 C -0.202 4.202 6 C -0.061 4.061 7 H 0.150 0.850 8 N -0.256 5.256 9 C -0.057 4.057 10 C -0.140 4.140 11 C 0.029 3.971 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.201 1.201 20 C -0.132 4.132 21 C -0.051 4.051 22 C 0.300 3.700 23 O -0.447 6.447 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.188 -2.187 11.832 20.170 hybrid contribution 1.345 -0.253 -0.313 1.404 sum -14.842 -2.440 11.519 18.946 Atomic orbital electron populations 1.22078 0.94500 1.03258 1.01875 1.21515 0.95376 0.80412 1.03345 1.48499 1.65264 1.14249 1.07499 1.22266 1.00612 0.92189 0.86299 1.23324 1.00706 1.00990 0.95186 1.22609 0.95575 0.95245 0.92656 0.84957 1.61873 1.06954 1.03258 1.53496 1.22090 0.97263 0.89533 0.96855 1.21574 0.95246 0.98544 0.98650 1.18635 0.92155 0.91679 0.94642 1.21591 1.05153 1.08073 1.22510 0.93047 1.25744 1.00248 0.94980 0.97662 1.70003 1.29737 1.14221 1.41830 0.85702 0.78791 0.78108 0.79596 1.19294 1.20938 1.20097 1.21408 0.94887 1.01015 0.95884 1.21930 0.92079 0.93262 0.97845 1.21097 0.76317 0.88253 0.84336 1.90675 1.54687 1.76020 1.23365 0.94788 0.89771 0.90769 0.92680 0.87421 0.88574 0.87985 0.91199 0.85873 0.94009 0.88660 0.91892 0.93759 0.98473 0.93135 0.96366 0.92265 0.94023 0.95049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 71.98 0.74 -1.77 16 2 C 0.11 2.22 6.65 86.38 0.57 2.79 16 3 N -0.62 -14.32 2.93 -817.96 -2.40 -16.72 16 4 C 0.11 1.61 7.35 86.83 0.64 2.25 16 5 C -0.16 -3.11 5.50 31.65 0.17 -2.94 16 6 C 0.05 1.40 3.13 44.91 0.14 1.54 16 7 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 8 N -0.53 -19.27 4.72 -871.16 -4.11 -23.38 16 9 C 0.07 2.28 5.11 86.33 0.44 2.73 16 10 C -0.10 -4.28 5.32 30.65 0.16 -4.11 16 11 C 0.05 2.45 2.16 -11.46 -0.02 2.42 16 12 C -0.54 -30.58 8.56 25.60 0.22 -30.36 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 14 C 0.01 0.69 5.31 84.66 0.45 1.13 16 15 N -0.92 -54.57 11.37 21.45 0.24 -54.33 16 16 Si 0.95 44.99 29.54 68.60 2.03 47.02 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 C -0.09 -4.84 5.12 30.65 0.16 -4.69 16 21 C 0.08 3.25 4.83 86.33 0.42 3.66 16 22 C 0.51 16.53 5.97 87.90 0.52 17.06 16 23 O -0.57 -24.29 17.18 -3.04 -0.05 -24.34 16 24 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 1.36 7.93 -2.39 -0.02 1.34 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.67 5.86 -2.39 -0.01 1.65 16 32 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.28 7.31 -2.39 -0.02 1.26 16 34 H 0.10 2.51 8.12 -2.38 -0.02 2.49 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 3.42 6.17 -2.39 -0.01 3.41 16 41 H 0.04 1.87 6.43 -2.39 -0.02 1.85 16 42 H 0.03 1.28 6.31 -2.38 -0.02 1.27 16 Total: -1.00 -73.50 324.20 1.30 -72.20 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.98 Total: 9.83 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.61 Total: -10.28 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -6.26 Total: -94.43 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.50 1.30 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595428092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.526 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds