Wall clock time and date at job start Mon Mar 30 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46987 * 2 1 4 4 C 1.46825 * 124.33333 * 269.93519 * 3 2 1 5 5 C 1.54481 * 105.44388 * 197.00180 * 4 3 2 6 6 C 1.54625 * 101.79703 * 334.62720 * 5 4 3 7 7 H 1.09003 * 110.49084 * 265.96626 * 6 5 4 8 8 N 1.46909 * 110.48519 * 143.45938 * 6 5 4 9 9 C 1.46844 * 110.99759 * 50.78920 * 8 6 5 10 10 C 1.53039 * 109.51942 * 185.84082 * 9 8 6 11 11 C 1.53112 * 109.27819 * 300.81917 * 10 9 8 12 12 C 1.50703 * 109.57532 * 177.59272 * 11 10 9 13 13 H 1.08006 * 120.00376 * 240.28800 * 12 11 10 14 14 C 1.37876 * 120.00171 * 60.28580 * 12 11 10 15 15 N 1.31521 * 119.99783 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00348 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47079 * 60.00169 * 16 14 12 18 18 H 1.48498 * 109.46818 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46763 * 299.99871 * 16 14 12 20 20 C 1.53118 * 109.16284 * 57.65707 * 11 10 9 21 21 C 1.46842 * 110.99816 * 175.00274 * 8 6 5 22 22 C 1.34414 * 124.34881 * 89.97619 * 3 2 1 23 23 O 1.21279 * 124.94846 * 359.62238 * 22 3 2 24 24 H 1.08995 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47235 * 300.00209 * 1 2 3 26 26 H 1.09005 * 109.47273 * 59.99930 * 1 2 3 27 27 H 1.08991 * 109.46953 * 240.00248 * 2 1 3 28 28 H 1.08996 * 109.47305 * 119.99812 * 2 1 3 29 29 H 1.08998 * 110.23857 * 78.01832 * 4 3 2 30 30 H 1.09000 * 110.28306 * 316.00091 * 4 3 2 31 31 H 1.09002 * 110.96936 * 216.49131 * 5 4 3 32 32 H 1.09003 * 110.97019 * 92.76754 * 5 4 3 33 33 H 1.09000 * 109.46142 * 305.85539 * 9 8 6 34 34 H 1.08996 * 109.46099 * 65.82871 * 9 8 6 35 35 H 1.09003 * 109.50105 * 180.87747 * 10 9 8 36 36 H 1.08995 * 109.50339 * 60.76610 * 10 9 8 37 37 H 1.08997 * 109.52593 * 297.75002 * 11 10 9 38 38 H 0.97000 * 119.99891 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.50847 * 182.40228 * 20 11 10 40 40 H 1.09008 * 109.53605 * 62.30480 * 20 11 10 41 41 H 1.09003 * 109.46128 * 294.17377 * 21 8 6 42 42 H 1.08998 * 109.46888 * 54.15637 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2956 2.1616 -1.2124 5 6 3.1749 3.3440 -0.7485 6 6 2.7692 3.4755 0.7378 7 1 1.9758 4.2141 0.8528 8 7 3.9322 3.8403 1.5578 9 6 4.6311 5.0016 0.9927 10 6 5.9136 5.2624 1.7860 11 6 5.5571 5.5215 3.2523 12 6 6.8194 5.7207 4.0512 13 1 7.0510 5.0556 4.8701 14 6 7.6787 6.7521 3.7367 15 7 7.3965 7.5623 2.7399 16 14 9.2437 6.9987 4.7265 17 1 10.0903 5.7829 4.6250 18 1 9.9890 8.1663 4.1913 19 1 8.8961 7.2426 6.1494 20 6 4.7879 4.3175 3.8029 21 6 3.5380 4.0840 2.9512 22 6 2.2706 2.0965 1.1097 23 8 2.1211 1.6946 2.2442 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3653 2.5300 -1.6447 30 1 2.8346 1.5529 -1.9385 31 1 2.9314 4.2514 -1.3011 32 1 4.2338 3.1037 -0.8441 33 1 4.8825 4.8026 -0.0490 34 1 3.9847 5.8773 1.0493 35 1 6.4241 6.1338 1.3761 36 1 6.5666 4.3923 1.7184 37 1 4.9360 6.4143 3.3240 38 1 8.0013 8.2877 2.5184 39 1 4.4941 4.5138 4.8340 40 1 5.4228 3.4321 3.7677 41 1 2.8967 4.9641 2.9985 42 1 2.9957 3.2185 3.3320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595428093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:08 Heat of formation + Delta-G solvation = -34.152740 kcal Electronic energy + Delta-G solvation = -21170.607225 eV Core-core repulsion = 18150.141233 eV Total energy + Delta-G solvation = -3020.465992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57323 -37.78568 -36.36214 -34.44481 -32.81706 -30.98126 -29.75838 -28.88508 -27.08984 -24.99536 -23.67997 -22.46664 -21.75774 -20.54967 -19.16918 -18.56255 -16.88628 -16.68918 -16.17550 -15.60807 -14.68709 -14.41266 -14.27949 -13.96831 -13.74285 -13.58248 -13.16225 -12.75107 -12.58534 -12.57241 -12.22153 -12.19006 -11.99439 -11.78306 -11.35288 -11.11131 -11.06492 -10.86596 -10.72355 -10.40669 -10.13517 -9.97264 -9.63724 -9.34783 -8.81526 -8.68920 -8.65041 -8.23389 -7.75404 -5.92255 -3.96833 2.68994 2.95433 3.36865 3.40614 3.44372 4.30413 4.38326 4.50069 4.55945 4.85701 4.92669 5.04674 5.12411 5.18250 5.33202 5.37792 5.44106 5.49999 5.68146 5.75894 5.86062 5.94617 5.99297 6.00786 6.19401 6.27161 6.47333 6.55087 6.63877 6.76103 6.98700 7.10088 7.16226 7.22264 7.47208 7.66004 7.70258 7.87298 8.11731 8.20306 8.31841 8.55129 9.06611 9.67087 11.13991 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043150 B = 0.004252 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.746501 B = 6582.806905 C = 6930.303617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.624 5.624 4 C 0.107 3.893 5 C -0.128 4.128 6 C 0.048 3.952 7 H 0.072 0.928 8 N -0.516 5.516 9 C 0.055 3.945 10 C -0.103 4.103 11 C 0.047 3.953 12 C -0.508 4.508 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.103 4.103 21 C 0.048 3.952 22 C 0.533 3.467 23 O -0.519 6.519 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.020 0.980 38 H 0.259 0.741 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 -10.556 -11.293 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.360 5.360 4 C -0.017 4.017 5 C -0.166 4.166 6 C -0.064 4.064 7 H 0.089 0.911 8 N -0.242 5.242 9 C -0.072 4.072 10 C -0.141 4.141 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.141 4.141 21 C -0.079 4.079 22 C 0.320 3.680 23 O -0.394 6.394 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.713 -11.077 -10.768 19.387 hybrid contribution 0.244 0.905 0.364 1.006 sum -11.469 -10.172 -10.405 18.527 Atomic orbital electron populations 1.22165 0.96053 1.02138 1.02372 1.21294 0.94095 0.81417 1.03052 1.48269 1.66737 1.13602 1.07359 1.22070 0.99162 0.92998 0.87437 1.22773 1.01586 0.98132 0.94107 1.22274 0.95018 0.94637 0.94450 0.91084 1.62023 1.21143 1.38846 1.02229 1.22378 0.97379 0.89084 0.98321 1.21657 0.93288 1.01543 0.97619 1.18700 0.94563 0.91912 0.92017 1.21203 1.05582 1.12776 1.15108 0.92813 1.24963 0.97972 0.95847 0.95234 1.69867 1.37293 1.17542 1.28633 0.86695 0.83581 0.77475 0.80453 1.20338 1.21415 1.20393 1.21648 0.94967 1.00585 0.96930 1.22392 0.98262 0.99634 0.87583 1.20746 0.75794 0.87280 0.84200 1.90642 1.52647 1.75077 1.21003 0.91581 0.92248 0.92571 0.90555 0.90064 0.91438 0.90408 0.89343 0.88550 0.92194 0.95826 0.88845 0.93825 0.96161 0.93129 0.93192 0.92599 0.96146 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.12 1.20 6.65 -4.04 -0.03 1.17 16 3 N -0.62 -7.44 2.93 -172.37 -0.51 -7.94 16 4 C 0.11 0.95 7.35 -3.09 -0.02 0.93 16 5 C -0.13 -1.40 5.37 -25.10 -0.13 -1.54 16 6 C 0.05 0.73 2.68 -67.72 -0.18 0.55 16 7 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 8 N -0.52 -9.64 4.50 -226.70 -1.02 -10.66 16 9 C 0.06 1.06 5.15 -3.83 -0.02 1.04 16 10 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 11 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 12 C -0.51 -14.32 8.56 -34.44 -0.29 -14.61 16 13 H 0.05 1.51 7.75 -52.48 -0.41 1.10 16 14 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.61 11.38 55.43 0.63 -24.98 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.10 -2.35 5.32 -26.65 -0.14 -2.50 16 21 C 0.05 0.98 5.33 -3.83 -0.02 0.96 16 22 C 0.53 8.45 7.61 -10.86 -0.08 8.37 16 23 O -0.52 -10.08 15.16 5.56 0.08 -10.00 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.15 7.30 -51.93 -0.38 0.77 16 33 H 0.06 1.00 6.23 -51.93 -0.32 0.67 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 2.44 6.18 -51.93 -0.32 2.11 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 1.74 5.63 -51.93 -0.29 1.45 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -31.48 324.98 -9.10 -40.58 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.19 Total: -1.86 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.97 Total: -6.66 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.90 Total: -43.58 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.48 -9.10 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595428093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.426 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds