Wall clock time and date at job start Mon Mar 30 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46987 * 2 1 4 4 C 1.46825 * 124.33333 * 269.93519 * 3 2 1 5 5 C 1.54481 * 105.44388 * 197.00180 * 4 3 2 6 6 C 1.54625 * 101.79703 * 334.62720 * 5 4 3 7 7 H 1.09003 * 110.49084 * 265.96626 * 6 5 4 8 8 N 1.46909 * 110.48519 * 143.45938 * 6 5 4 9 9 C 1.46844 * 110.99759 * 50.78920 * 8 6 5 10 10 C 1.53039 * 109.51942 * 185.84082 * 9 8 6 11 11 C 1.53112 * 109.27819 * 300.81917 * 10 9 8 12 12 C 1.50703 * 109.57532 * 177.59272 * 11 10 9 13 13 H 1.08006 * 120.00376 * 240.28800 * 12 11 10 14 14 C 1.37876 * 120.00171 * 60.28580 * 12 11 10 15 15 N 1.31521 * 119.99783 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00348 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47079 * 60.00169 * 16 14 12 18 18 H 1.48498 * 109.46818 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46763 * 299.99871 * 16 14 12 20 20 C 1.53118 * 109.16284 * 57.65707 * 11 10 9 21 21 C 1.46842 * 110.99816 * 175.00274 * 8 6 5 22 22 C 1.34414 * 124.34881 * 89.97619 * 3 2 1 23 23 O 1.21279 * 124.94846 * 359.62238 * 22 3 2 24 24 H 1.08995 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47235 * 300.00209 * 1 2 3 26 26 H 1.09005 * 109.47273 * 59.99930 * 1 2 3 27 27 H 1.08991 * 109.46953 * 240.00248 * 2 1 3 28 28 H 1.08996 * 109.47305 * 119.99812 * 2 1 3 29 29 H 1.08998 * 110.23857 * 78.01832 * 4 3 2 30 30 H 1.09000 * 110.28306 * 316.00091 * 4 3 2 31 31 H 1.09002 * 110.96936 * 216.49131 * 5 4 3 32 32 H 1.09003 * 110.97019 * 92.76754 * 5 4 3 33 33 H 1.09000 * 109.46142 * 305.85539 * 9 8 6 34 34 H 1.08996 * 109.46099 * 65.82871 * 9 8 6 35 35 H 1.09003 * 109.50105 * 180.87747 * 10 9 8 36 36 H 1.08995 * 109.50339 * 60.76610 * 10 9 8 37 37 H 1.08997 * 109.52593 * 297.75002 * 11 10 9 38 38 H 0.97000 * 119.99891 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.50847 * 182.40228 * 20 11 10 40 40 H 1.09008 * 109.53605 * 62.30480 * 20 11 10 41 41 H 1.09003 * 109.46128 * 294.17377 * 21 8 6 42 42 H 1.08998 * 109.46888 * 54.15637 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2956 2.1616 -1.2124 5 6 3.1749 3.3440 -0.7485 6 6 2.7692 3.4755 0.7378 7 1 1.9758 4.2141 0.8528 8 7 3.9322 3.8403 1.5578 9 6 4.6311 5.0016 0.9927 10 6 5.9136 5.2624 1.7860 11 6 5.5571 5.5215 3.2523 12 6 6.8194 5.7207 4.0512 13 1 7.0510 5.0556 4.8701 14 6 7.6787 6.7521 3.7367 15 7 7.3965 7.5623 2.7399 16 14 9.2437 6.9987 4.7265 17 1 10.0903 5.7829 4.6250 18 1 9.9890 8.1663 4.1913 19 1 8.8961 7.2426 6.1494 20 6 4.7879 4.3175 3.8029 21 6 3.5380 4.0840 2.9512 22 6 2.2706 2.0965 1.1097 23 8 2.1211 1.6946 2.2442 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3653 2.5300 -1.6447 30 1 2.8346 1.5529 -1.9385 31 1 2.9314 4.2514 -1.3011 32 1 4.2338 3.1037 -0.8441 33 1 4.8825 4.8026 -0.0490 34 1 3.9847 5.8773 1.0493 35 1 6.4241 6.1338 1.3761 36 1 6.5666 4.3923 1.7184 37 1 4.9360 6.4143 3.3240 38 1 8.0013 8.2877 2.5184 39 1 4.4941 4.5138 4.8340 40 1 5.4228 3.4321 3.7677 41 1 2.8967 4.9641 2.9985 42 1 2.9957 3.2185 3.3320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595428093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:08 Heat of formation + Delta-G solvation = -54.621103 kcal Electronic energy + Delta-G solvation = -21171.494800 eV Core-core repulsion = 18150.141233 eV Total energy + Delta-G solvation = -3021.353566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69823 -39.36908 -37.50303 -35.97794 -34.28573 -32.59497 -31.49818 -29.89085 -28.46041 -26.72677 -24.63079 -23.92054 -23.44604 -21.82959 -20.42441 -20.19817 -18.46980 -17.88498 -17.68974 -16.84603 -16.50142 -15.70090 -15.65358 -15.15582 -14.84665 -14.78820 -14.44389 -14.28217 -14.20854 -14.10959 -13.68097 -13.27271 -13.17404 -12.90487 -12.79474 -12.56732 -12.55732 -12.23326 -12.10976 -12.06201 -11.88237 -11.82262 -11.40129 -11.08197 -10.66759 -10.48404 -10.32980 -9.68572 -9.24125 -8.07337 -6.20318 1.41775 1.43219 1.50897 1.50966 2.04278 2.44684 3.03763 3.19116 3.33714 3.63798 4.02002 4.11673 4.15354 4.22896 4.26395 4.30538 4.44073 4.51802 4.54572 4.58927 4.70533 4.74165 4.86032 4.90371 4.94786 4.97471 4.98407 5.13367 5.14337 5.23972 5.29023 5.31305 5.54383 5.61894 5.69612 5.98847 5.99340 6.09259 6.24899 6.29244 6.41991 6.88921 7.19489 7.46690 8.97192 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043150 B = 0.004252 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.746501 B = 6582.806905 C = 6930.303617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.617 5.617 4 C 0.108 3.892 5 C -0.122 4.122 6 C 0.042 3.958 7 H 0.077 0.923 8 N -0.526 5.526 9 C 0.069 3.931 10 C -0.094 4.094 11 C 0.045 3.955 12 C -0.538 4.538 13 H 0.046 0.954 14 C 0.016 3.984 15 N -0.914 5.914 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.275 1.275 20 C -0.096 4.096 21 C 0.060 3.940 22 C 0.520 3.480 23 O -0.569 6.569 24 H 0.084 0.916 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.029 0.971 37 H -0.010 1.010 38 H 0.262 0.738 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.019 0.981 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 -11.352 -13.761 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.350 5.350 4 C -0.014 4.014 5 C -0.160 4.160 6 C -0.070 4.070 7 H 0.094 0.906 8 N -0.252 5.252 9 C -0.058 4.058 10 C -0.133 4.133 11 C 0.026 3.974 12 C -0.576 4.576 13 H 0.064 0.936 14 C -0.183 4.183 15 N -0.554 5.554 16 Si 0.779 3.221 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.134 4.134 21 C -0.068 4.068 22 C 0.307 3.693 23 O -0.448 6.448 24 H 0.103 0.897 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.129 0.871 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.204 -11.890 -13.291 21.610 hybrid contribution 0.358 1.122 1.102 1.613 sum -11.846 -10.768 -12.189 20.121 Atomic orbital electron populations 1.22102 0.94944 1.03234 1.01697 1.21521 0.94993 0.80268 1.03660 1.48430 1.65060 1.14255 1.07302 1.22351 1.00459 0.92202 0.86414 1.22840 1.01644 1.00436 0.91049 1.22441 0.93756 0.94376 0.96415 0.90580 1.61895 1.23366 1.38192 1.01748 1.22169 0.95090 0.89407 0.99167 1.21416 0.95278 0.99689 0.96870 1.18661 0.93583 0.91648 0.93470 1.21529 1.07052 1.13345 1.15649 0.93614 1.25695 1.00925 0.95449 0.96212 1.69987 1.38240 1.17687 1.29462 0.85696 0.79779 0.77638 0.79031 1.19827 1.20516 1.19993 1.21511 0.95715 0.98764 0.97391 1.22168 0.96537 0.99352 0.88724 1.20975 0.75914 0.87973 0.84451 1.90607 1.55062 1.76053 1.23077 0.89695 0.95029 0.90990 0.87058 0.92322 0.88619 0.87485 0.86690 0.89290 0.88797 0.96153 0.91301 0.95232 0.99149 0.92933 0.93483 0.93774 0.96272 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.98 0.74 -1.61 16 2 C 0.12 1.98 6.65 86.38 0.57 2.55 16 3 N -0.62 -13.13 2.93 -817.85 -2.40 -15.53 16 4 C 0.11 1.43 7.35 86.82 0.64 2.06 16 5 C -0.12 -2.23 5.37 31.65 0.17 -2.06 16 6 C 0.04 1.19 2.68 44.91 0.12 1.31 16 7 H 0.08 2.10 8.13 -2.39 -0.02 2.08 16 8 N -0.53 -19.44 4.50 -871.14 -3.92 -23.36 16 9 C 0.07 2.59 5.15 86.33 0.44 3.04 16 10 C -0.09 -4.56 5.12 30.65 0.16 -4.41 16 11 C 0.04 2.39 2.16 -11.46 -0.02 2.37 16 12 C -0.54 -31.22 8.56 25.60 0.22 -31.00 16 13 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16 14 C 0.02 0.90 5.31 84.65 0.45 1.35 16 15 N -0.91 -53.18 11.38 21.45 0.24 -52.94 16 16 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 C -0.10 -4.54 5.32 30.65 0.16 -4.38 16 21 C 0.06 2.49 5.33 86.33 0.46 2.95 16 22 C 0.52 16.07 7.61 87.90 0.67 16.74 16 23 O -0.57 -22.60 15.16 -3.03 -0.05 -22.65 16 24 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.27 7.93 -2.39 -0.02 1.26 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.81 7.30 -2.39 -0.02 1.79 16 33 H 0.09 2.91 6.23 -2.39 -0.01 2.90 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 3.67 6.18 -2.39 -0.01 3.66 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 3.48 5.63 -2.39 -0.01 3.46 16 Total: -1.00 -71.44 324.98 1.66 -69.78 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.98 Total: 8.99 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.78 Total: -11.08 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -6.08 Total: -91.83 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.44 1.66 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595428093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.163 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds