Wall clock time and date at job start Mon Mar 30 2020 00:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47348 * 2 1 4 4 C 1.46767 * 124.35376 * 270.00050 * 3 2 1 5 5 C 1.54480 * 105.47098 * 196.99474 * 4 3 2 6 6 C 1.54622 * 101.76727 * 334.58061 * 5 4 3 7 7 H 1.08993 * 110.60378 * 266.06329 * 6 5 4 8 8 N 1.46912 * 110.48349 * 143.47648 * 6 5 4 9 9 C 1.46844 * 110.99768 * 59.56422 * 8 6 5 10 10 C 1.53034 * 109.52050 * 185.83623 * 9 8 6 11 11 C 1.53118 * 109.28213 * 300.82037 * 10 9 8 12 12 C 1.53116 * 109.15937 * 57.65364 * 11 10 9 13 13 H 1.09010 * 109.53720 * 62.30465 * 12 11 10 14 14 C 1.50697 * 109.50727 * 182.40409 * 12 11 10 15 15 H 1.08001 * 119.99914 * 95.01343 * 14 12 11 16 16 C 1.37872 * 120.00050 * 275.02116 * 14 12 11 17 17 N 1.31514 * 120.00446 * 355.15716 * 16 14 12 18 18 Si 1.86802 * 120.00079 * 175.15702 * 16 14 12 19 19 H 1.48506 * 109.46993 * 59.99777 * 18 16 14 20 20 H 1.48498 * 109.47382 * 300.00213 * 18 16 14 21 21 H 1.48495 * 109.47309 * 179.97438 * 18 16 14 22 22 C 1.46840 * 110.99806 * 183.77328 * 8 6 5 23 23 C 1.34426 * 124.34515 * 89.97524 * 3 2 1 24 24 O 1.21281 * 124.94361 * 359.65296 * 23 3 2 25 25 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46917 * 299.99805 * 1 2 3 27 27 H 1.08997 * 109.46962 * 59.99708 * 1 2 3 28 28 H 1.09005 * 109.47260 * 240.00027 * 2 1 3 29 29 H 1.09006 * 109.47053 * 120.00903 * 2 1 3 30 30 H 1.09000 * 110.24260 * 315.98998 * 4 3 2 31 31 H 1.08994 * 110.24543 * 77.99397 * 4 3 2 32 32 H 1.09003 * 110.96691 * 216.46647 * 5 4 3 33 33 H 1.09000 * 110.97007 * 92.70800 * 5 4 3 34 34 H 1.09000 * 109.46162 * 305.85430 * 9 8 6 35 35 H 1.09006 * 109.46022 * 65.83225 * 9 8 6 36 36 H 1.09005 * 109.50346 * 60.76450 * 10 9 8 37 37 H 1.08999 * 109.49978 * 180.83874 * 10 9 8 38 38 H 1.09002 * 109.52401 * 297.75346 * 11 10 9 39 39 H 1.08997 * 109.52306 * 177.55546 * 11 10 9 40 40 H 0.97009 * 119.99668 * 5.18347 * 17 16 14 41 41 H 1.09008 * 109.46676 * 54.14438 * 22 8 6 42 42 H 1.08999 * 109.45953 * 294.17275 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2945 2.1620 -1.2117 5 6 3.1741 3.3443 -0.7484 6 6 2.7687 3.4756 0.7380 7 1 1.9743 4.2125 0.8552 8 7 3.9319 3.8406 1.5578 9 6 4.5067 5.1178 1.1166 10 6 5.7962 5.3937 1.8932 11 6 5.4833 5.4438 3.3912 12 6 4.8413 4.1199 3.8151 13 1 5.5455 3.3042 3.6507 14 6 4.4761 4.1827 5.2758 15 1 3.4761 4.4644 5.5708 16 6 5.4187 3.8806 6.2356 17 7 6.6069 3.4461 5.8767 18 14 5.0080 4.0885 8.0460 19 1 3.8518 3.2237 8.3938 20 1 4.6634 5.5075 8.3157 21 1 6.1818 3.6988 8.8678 22 6 3.5795 3.8809 2.9827 23 6 2.2708 2.0963 1.1099 24 8 2.1216 1.6941 2.2443 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8900 30 1 2.8329 1.5533 -1.9381 31 1 1.3639 2.5305 -1.6431 32 1 2.9302 4.2518 -1.3008 33 1 4.2329 3.1039 -0.8443 34 1 4.7285 5.0673 0.0505 35 1 3.7927 5.9205 1.3014 36 1 6.5157 4.5985 1.6981 37 1 6.2146 6.3489 1.5760 38 1 4.7937 6.2637 3.5921 39 1 6.4058 5.5969 3.9511 40 1 6.8466 3.4094 4.9374 41 1 3.1278 2.9320 3.2722 42 1 2.8700 4.6894 3.1586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:17 Heat of formation + Delta-G solvation = -35.748789 kcal Electronic energy + Delta-G solvation = -21408.682263 eV Core-core repulsion = 18388.147062 eV Total energy + Delta-G solvation = -3020.535201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56600 -37.88095 -36.33703 -34.46272 -32.89293 -31.35576 -29.69082 -28.81055 -26.82191 -24.51756 -23.65790 -22.69628 -21.94943 -20.62613 -19.12978 -18.92305 -16.89317 -16.80779 -16.34206 -15.41038 -14.64670 -14.40140 -14.14238 -13.77715 -13.68751 -13.60389 -13.50015 -12.98627 -12.53201 -12.52386 -12.38547 -12.18665 -11.99728 -11.60362 -11.48052 -11.31513 -11.16433 -11.03207 -10.70668 -10.19982 -10.16408 -10.00085 -9.77070 -9.26053 -8.89570 -8.65404 -8.29958 -8.14718 -7.77654 -6.21223 -3.90062 2.74564 3.00341 3.51921 3.54462 3.72732 4.29431 4.37462 4.54345 4.66683 4.89985 4.93774 5.07035 5.13901 5.23656 5.33549 5.42296 5.48086 5.54586 5.59202 5.65292 5.71516 5.76869 5.91017 5.97969 6.02313 6.12300 6.33730 6.49220 6.54055 6.61133 6.66113 6.96710 7.04620 7.08317 7.20152 7.51109 7.65110 7.76234 7.90482 8.41244 8.44414 8.59510 9.04190 9.81732 11.18147 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.005610 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.590911 B = 4989.688006 C = 5932.182886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.625 5.625 4 C 0.108 3.892 5 C -0.126 4.126 6 C 0.050 3.950 7 H 0.070 0.930 8 N -0.521 5.521 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.039 3.961 13 H 0.038 0.962 14 C -0.589 4.589 15 H 0.045 0.955 16 C 0.021 3.979 17 N -0.915 5.915 18 Si 1.066 2.934 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.053 3.947 23 C 0.528 3.472 24 O -0.505 6.505 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.052 0.948 40 H 0.271 0.729 41 H 0.101 0.899 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 -1.593 -17.895 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.002 3.998 3 N -0.361 5.361 4 C -0.016 4.016 5 C -0.164 4.164 6 C -0.063 4.063 7 H 0.088 0.912 8 N -0.247 5.247 9 C -0.065 4.065 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.020 3.980 13 H 0.056 0.944 14 C -0.628 4.628 15 H 0.064 0.936 16 C -0.183 4.183 17 N -0.551 5.551 18 Si 0.894 3.106 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.073 4.073 23 C 0.315 3.685 24 O -0.378 6.378 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.939 -2.488 -15.792 17.850 hybrid contribution -1.339 0.998 -1.594 2.308 sum -9.278 -1.491 -17.386 19.763 Atomic orbital electron populations 1.22164 0.96058 1.02158 1.02339 1.21300 0.94099 0.81339 1.03107 1.48240 1.67023 1.13633 1.07186 1.22021 0.99053 0.92953 0.87561 1.22727 1.01487 0.98021 0.94185 1.22246 0.94717 0.94924 0.94377 0.91234 1.62152 1.26267 1.31211 1.05096 1.22049 0.96652 0.89388 0.98432 1.21655 0.96132 0.99941 0.97798 1.21811 1.00358 1.00733 0.91994 1.18833 0.92267 0.92895 0.93972 0.94426 1.21879 0.99083 1.50841 0.90989 0.93643 1.25742 0.93885 0.93250 1.05413 1.70770 1.21582 1.42472 1.20274 0.83602 0.75569 0.76242 0.75153 1.21531 1.21593 1.20881 1.22727 0.99197 1.02001 0.83410 1.20682 0.76296 0.87224 0.84316 1.90687 1.51718 1.74734 1.20678 0.91557 0.92173 0.92664 0.90595 0.89936 0.90488 0.91525 0.89637 0.88773 0.91867 0.95691 0.91937 0.93096 0.94100 0.92927 0.91804 0.88061 0.96890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.12 1.34 6.65 -4.04 -0.03 1.31 16 3 N -0.62 -8.06 2.93 -172.41 -0.51 -8.57 16 4 C 0.11 0.99 7.35 -3.12 -0.02 0.97 16 5 C -0.13 -1.34 5.44 -25.10 -0.14 -1.48 16 6 C 0.05 0.77 2.66 -67.72 -0.18 0.59 16 7 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 8 N -0.52 -9.98 4.50 -226.70 -1.02 -11.00 16 9 C 0.06 1.05 5.28 -3.84 -0.02 1.03 16 10 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 11 C -0.11 -2.59 5.27 -26.61 -0.14 -2.73 16 12 C 0.04 1.05 1.99 -91.69 -0.18 0.86 16 13 H 0.04 1.11 6.67 -51.92 -0.35 0.76 16 14 C -0.59 -17.39 8.32 -34.44 -0.29 -17.68 16 15 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 16 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 17 N -0.91 -28.59 13.63 55.43 0.76 -27.83 16 18 Si 1.07 26.36 29.91 -169.99 -5.08 21.28 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 22 C 0.05 1.25 4.52 -3.84 -0.02 1.23 16 23 C 0.53 9.19 7.58 -10.86 -0.08 9.11 16 24 O -0.50 -11.14 14.62 5.56 0.08 -11.06 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 34 H 0.06 0.86 6.78 -51.93 -0.35 0.51 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.27 8.45 6.66 -40.82 -0.27 8.18 16 41 H 0.10 2.66 5.03 -51.92 -0.26 2.40 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -34.31 326.48 -9.00 -43.31 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.18 Total: -1.21 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.97 Total: -9.84 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.77 Total: -47.41 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.31 -9.00 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.565 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds