Wall clock time and date at job start Mon Mar 30 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47348 * 2 1 4 4 C 1.46767 * 124.35376 * 270.00050 * 3 2 1 5 5 C 1.54480 * 105.47098 * 196.99474 * 4 3 2 6 6 C 1.54622 * 101.76727 * 334.58061 * 5 4 3 7 7 H 1.08993 * 110.60378 * 266.06329 * 6 5 4 8 8 N 1.46912 * 110.48349 * 143.47648 * 6 5 4 9 9 C 1.46844 * 110.99768 * 59.56422 * 8 6 5 10 10 C 1.53034 * 109.52050 * 185.83623 * 9 8 6 11 11 C 1.53118 * 109.28213 * 300.82037 * 10 9 8 12 12 C 1.53116 * 109.15937 * 57.65364 * 11 10 9 13 13 H 1.09010 * 109.53720 * 62.30465 * 12 11 10 14 14 C 1.50697 * 109.50727 * 182.40409 * 12 11 10 15 15 H 1.08001 * 119.99914 * 95.01343 * 14 12 11 16 16 C 1.37872 * 120.00050 * 275.02116 * 14 12 11 17 17 N 1.31514 * 120.00446 * 355.15716 * 16 14 12 18 18 Si 1.86802 * 120.00079 * 175.15702 * 16 14 12 19 19 H 1.48506 * 109.46993 * 59.99777 * 18 16 14 20 20 H 1.48498 * 109.47382 * 300.00213 * 18 16 14 21 21 H 1.48495 * 109.47309 * 179.97438 * 18 16 14 22 22 C 1.46840 * 110.99806 * 183.77328 * 8 6 5 23 23 C 1.34426 * 124.34515 * 89.97524 * 3 2 1 24 24 O 1.21281 * 124.94361 * 359.65296 * 23 3 2 25 25 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46917 * 299.99805 * 1 2 3 27 27 H 1.08997 * 109.46962 * 59.99708 * 1 2 3 28 28 H 1.09005 * 109.47260 * 240.00027 * 2 1 3 29 29 H 1.09006 * 109.47053 * 120.00903 * 2 1 3 30 30 H 1.09000 * 110.24260 * 315.98998 * 4 3 2 31 31 H 1.08994 * 110.24543 * 77.99397 * 4 3 2 32 32 H 1.09003 * 110.96691 * 216.46647 * 5 4 3 33 33 H 1.09000 * 110.97007 * 92.70800 * 5 4 3 34 34 H 1.09000 * 109.46162 * 305.85430 * 9 8 6 35 35 H 1.09006 * 109.46022 * 65.83225 * 9 8 6 36 36 H 1.09005 * 109.50346 * 60.76450 * 10 9 8 37 37 H 1.08999 * 109.49978 * 180.83874 * 10 9 8 38 38 H 1.09002 * 109.52401 * 297.75346 * 11 10 9 39 39 H 1.08997 * 109.52306 * 177.55546 * 11 10 9 40 40 H 0.97009 * 119.99668 * 5.18347 * 17 16 14 41 41 H 1.09008 * 109.46676 * 54.14438 * 22 8 6 42 42 H 1.08999 * 109.45953 * 294.17275 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2945 2.1620 -1.2117 5 6 3.1741 3.3443 -0.7484 6 6 2.7687 3.4756 0.7380 7 1 1.9743 4.2125 0.8552 8 7 3.9319 3.8406 1.5578 9 6 4.5067 5.1178 1.1166 10 6 5.7962 5.3937 1.8932 11 6 5.4833 5.4438 3.3912 12 6 4.8413 4.1199 3.8151 13 1 5.5455 3.3042 3.6507 14 6 4.4761 4.1827 5.2758 15 1 3.4761 4.4644 5.5708 16 6 5.4187 3.8806 6.2356 17 7 6.6069 3.4461 5.8767 18 14 5.0080 4.0885 8.0460 19 1 3.8518 3.2237 8.3938 20 1 4.6634 5.5075 8.3157 21 1 6.1818 3.6988 8.8678 22 6 3.5795 3.8809 2.9827 23 6 2.2708 2.0963 1.1099 24 8 2.1216 1.6941 2.2443 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8900 30 1 2.8329 1.5533 -1.9381 31 1 1.3639 2.5305 -1.6431 32 1 2.9302 4.2518 -1.3008 33 1 4.2329 3.1039 -0.8443 34 1 4.7285 5.0673 0.0505 35 1 3.7927 5.9205 1.3014 36 1 6.5157 4.5985 1.6981 37 1 6.2146 6.3489 1.5760 38 1 4.7937 6.2637 3.5921 39 1 6.4058 5.5969 3.9511 40 1 6.8466 3.4094 4.9374 41 1 3.1278 2.9320 3.2722 42 1 2.8700 4.6894 3.1586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:16 Heat of formation + Delta-G solvation = -60.004404 kcal Electronic energy + Delta-G solvation = -21409.734066 eV Core-core repulsion = 18388.147062 eV Total energy + Delta-G solvation = -3021.587004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77421 -39.47565 -37.60415 -36.06798 -34.49183 -32.79619 -31.53199 -29.86818 -28.01298 -26.59287 -24.77668 -24.13797 -23.53826 -21.96806 -20.70221 -20.28783 -18.83160 -17.97716 -17.65990 -16.71472 -16.17395 -15.82348 -15.66094 -15.41405 -15.16496 -14.87287 -14.48435 -14.32784 -14.18323 -14.03439 -13.76981 -13.57134 -13.24817 -12.97872 -12.80163 -12.66024 -12.64052 -12.19102 -12.03932 -11.93507 -11.91545 -11.80746 -11.49182 -11.18998 -10.60962 -10.42075 -10.31741 -9.71254 -9.29602 -8.62259 -6.31077 1.46094 1.48307 1.57261 1.76820 2.01131 2.55288 3.01022 3.20335 3.30164 3.61661 4.00026 4.04453 4.07614 4.11915 4.18799 4.24361 4.29911 4.45010 4.46649 4.50160 4.65849 4.70170 4.73896 4.81648 4.86039 4.92183 4.94883 4.96253 5.12077 5.14263 5.21152 5.21510 5.24895 5.53008 5.65422 5.82055 5.92619 6.04483 6.19497 6.24741 6.27423 6.67304 7.17406 7.48689 8.77179 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.005610 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.590911 B = 4989.688006 C = 5932.182886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.617 5.617 4 C 0.105 3.895 5 C -0.113 4.113 6 C 0.043 3.957 7 H 0.075 0.925 8 N -0.533 5.533 9 C 0.064 3.936 10 C -0.111 4.111 11 C -0.102 4.102 12 C 0.036 3.964 13 H -0.002 1.002 14 C -0.608 4.608 15 H 0.034 0.966 16 C -0.030 4.030 17 N -0.936 5.936 18 Si 1.112 2.888 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.279 1.279 22 C 0.071 3.929 23 C 0.508 3.492 24 O -0.572 6.572 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.023 0.977 40 H 0.257 0.743 41 H 0.069 0.931 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 -0.680 -21.372 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.006 4.006 3 N -0.351 5.351 4 C -0.017 4.017 5 C -0.151 4.151 6 C -0.068 4.068 7 H 0.092 0.908 8 N -0.259 5.259 9 C -0.062 4.062 10 C -0.149 4.149 11 C -0.140 4.140 12 C 0.016 3.984 13 H 0.016 0.984 14 C -0.647 4.647 15 H 0.053 0.947 16 C -0.228 4.228 17 N -0.574 5.574 18 Si 0.934 3.066 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.204 1.204 22 C -0.056 4.056 23 C 0.296 3.704 24 O -0.451 6.451 25 H 0.103 0.897 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -8.783 -1.571 -19.369 21.325 hybrid contribution -1.128 0.651 -0.611 1.438 sum -9.911 -0.920 -19.979 22.321 Atomic orbital electron populations 1.22094 0.94840 1.03268 1.01670 1.21517 0.95116 0.80465 1.03468 1.48444 1.65085 1.14191 1.07366 1.22398 1.00691 0.92400 0.86197 1.22814 1.01687 1.00484 0.90116 1.22449 0.93640 0.93798 0.96962 0.90758 1.62004 1.28249 1.32890 1.02724 1.22160 0.95262 0.88270 1.00556 1.21609 0.97456 1.01614 0.94196 1.21590 0.98458 0.98402 0.95584 1.18781 0.92916 0.93252 0.93403 0.98389 1.22282 0.98595 1.50564 0.93257 0.94713 1.27238 0.93308 0.92365 1.09865 1.70892 1.22640 1.44465 1.19388 0.83016 0.75792 0.77607 0.70199 1.20361 1.19231 1.20440 1.22205 0.96916 0.99755 0.86735 1.21241 0.76211 0.88569 0.84424 1.90646 1.54777 1.76187 1.23486 0.89666 0.95432 0.90545 0.86672 0.93075 0.87344 0.88495 0.85754 0.88997 0.87049 0.95020 0.92864 0.89510 0.94222 0.95778 0.93285 0.91311 0.97925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.24 71.98 0.74 -2.07 16 2 C 0.12 2.35 6.65 86.38 0.57 2.92 16 3 N -0.62 -14.82 2.93 -817.97 -2.40 -17.22 16 4 C 0.10 1.41 7.35 86.83 0.64 2.05 16 5 C -0.11 -1.88 5.44 31.65 0.17 -1.71 16 6 C 0.04 1.28 2.66 44.90 0.12 1.40 16 7 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 8 N -0.53 -20.23 4.50 -871.16 -3.92 -24.15 16 9 C 0.06 1.99 5.28 86.33 0.46 2.44 16 10 C -0.11 -4.01 6.09 30.64 0.19 -3.82 16 11 C -0.10 -4.90 5.27 30.67 0.16 -4.74 16 12 C 0.04 2.00 1.99 -11.49 -0.02 1.97 16 13 H 0.00 -0.13 6.67 -2.38 -0.02 -0.15 16 14 C -0.61 -37.79 8.32 25.60 0.21 -37.58 16 15 H 0.03 2.17 7.81 -2.91 -0.02 2.15 16 16 C -0.03 -1.86 5.45 84.65 0.46 -1.40 16 17 N -0.94 -61.14 13.63 21.45 0.29 -60.85 16 18 Si 1.11 54.30 29.91 68.60 2.05 56.36 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 22 C 0.07 3.55 4.52 86.33 0.39 3.94 16 23 C 0.51 17.94 7.58 87.90 0.67 18.60 16 24 O -0.57 -27.15 14.62 -3.03 -0.04 -27.20 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.05 1.36 7.93 -2.38 -0.02 1.34 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.64 7.86 -2.39 -0.02 1.62 16 34 H 0.11 2.44 6.78 -2.39 -0.02 2.43 16 35 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.26 17.05 6.66 -92.70 -0.62 16.43 16 41 H 0.07 3.91 5.03 -2.38 -0.01 3.89 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -83.63 326.48 1.86 -81.77 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.13 Total: 9.27 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.75 Total: -17.97 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -6.03 Total: -102.22 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 14 Polarization: 54.30 SS G_CDS: 2.05 Total: 56.36 kcal Total: -83.63 1.86 -81.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.763 kcal (2) G-P(sol) polarization free energy of solvation -83.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds