Wall clock time and date at job start Mon Mar 30 2020 00:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47249 * 2 1 4 4 C 1.46764 * 124.34768 * 89.99584 * 3 2 1 5 5 C 1.54487 * 105.47130 * 162.96566 * 4 3 2 6 6 C 1.54624 * 101.76367 * 25.41916 * 5 4 3 7 7 H 1.08995 * 110.49125 * 94.01560 * 6 5 4 8 8 N 1.46907 * 110.48282 * 216.52548 * 6 5 4 9 9 C 1.46852 * 110.99780 * 314.20733 * 8 6 5 10 10 C 1.53038 * 109.51991 * 174.16427 * 9 8 6 11 11 C 1.53121 * 109.28145 * 59.17795 * 10 9 8 12 12 C 1.53116 * 109.15919 * 302.34666 * 11 10 9 13 13 H 1.09002 * 109.50351 * 297.71191 * 12 11 10 14 14 C 1.50700 * 109.53480 * 177.61205 * 12 11 10 15 15 H 1.07992 * 120.00329 * 240.09746 * 14 12 11 16 16 C 1.37881 * 119.99818 * 60.09632 * 14 12 11 17 17 N 1.31518 * 119.99934 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00022 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46951 * 60.00080 * 18 16 14 20 20 H 1.48497 * 109.47255 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47130 * 299.99920 * 18 16 14 22 22 C 1.46851 * 110.99868 * 189.99874 * 8 6 5 23 23 C 1.34418 * 124.35122 * 269.97901 * 3 2 1 24 24 O 1.21282 * 124.94279 * 0.41935 * 23 3 2 25 25 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47235 * 299.99800 * 1 2 3 27 27 H 1.09003 * 109.47117 * 60.00340 * 1 2 3 28 28 H 1.09001 * 109.47235 * 240.00200 * 2 1 3 29 29 H 1.09003 * 109.47117 * 119.99660 * 2 1 3 30 30 H 1.08997 * 110.24696 * 43.96501 * 4 3 2 31 31 H 1.09001 * 110.32469 * 281.99972 * 4 3 2 32 32 H 1.08996 * 110.96978 * 267.29301 * 5 4 3 33 33 H 1.08998 * 110.96706 * 143.53682 * 5 4 3 34 34 H 1.08996 * 109.46331 * 294.17770 * 9 8 6 35 35 H 1.09000 * 109.45938 * 54.14758 * 9 8 6 36 36 H 1.09004 * 109.50259 * 179.12052 * 10 9 8 37 37 H 1.08998 * 109.50040 * 299.19508 * 10 9 8 38 38 H 1.08997 * 109.52457 * 182.43793 * 11 10 9 39 39 H 1.09000 * 109.52188 * 62.25069 * 11 10 9 40 40 H 0.97001 * 119.99543 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46045 * 65.82355 * 22 8 6 42 42 H 1.08998 * 109.45058 * 305.85067 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1749 3.3438 0.7488 6 6 2.7702 3.4751 -0.7378 7 1 1.9771 4.2138 -0.8535 8 7 3.9339 3.8393 -1.5571 9 6 4.7003 4.9238 -0.9300 10 6 5.9785 5.1769 -1.7325 11 6 5.6072 5.5538 -3.1694 12 6 4.7687 4.4292 -3.7832 13 1 5.3599 3.5143 -3.8223 14 6 4.3491 4.8171 -5.1776 15 1 3.3005 4.8901 -5.4254 16 6 5.3040 5.0789 -6.1372 17 7 6.5810 4.9896 -5.8356 18 14 4.7839 5.5604 -7.8655 19 1 3.9790 6.8071 -7.8109 20 1 5.9907 5.7860 -8.7009 21 1 3.9685 4.4703 -8.4588 22 6 3.5255 4.1978 -2.9214 23 6 2.2716 2.0961 -1.1097 24 8 2.1222 1.6941 -2.2442 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8319 1.5530 1.9385 31 1 1.3644 2.5312 1.6441 32 1 4.2334 3.1027 0.8452 33 1 2.9312 4.2514 1.3010 34 1 4.0971 5.8314 -0.9120 35 1 4.9615 4.6411 0.0898 36 1 6.5395 5.9923 -1.2757 37 1 6.5891 4.2740 -1.7387 38 1 6.5154 5.6928 -3.7558 39 1 5.0298 6.4783 -3.1658 40 1 7.2527 5.1734 -6.5108 41 1 2.9278 5.1089 -2.8940 42 1 2.9336 3.3878 -3.3477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:20 Heat of formation + Delta-G solvation = -32.363595 kcal Electronic energy + Delta-G solvation = -21318.559904 eV Core-core repulsion = 18298.171496 eV Total energy + Delta-G solvation = -3020.388408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48167 -37.78300 -36.23353 -34.33657 -32.73372 -31.19943 -29.89062 -28.75770 -26.72940 -24.95885 -23.57836 -22.77546 -21.77747 -20.33805 -19.08265 -18.60211 -16.80530 -16.66980 -16.17821 -15.29402 -14.63808 -14.45861 -14.22702 -13.89820 -13.68392 -13.51493 -13.28713 -12.71324 -12.55674 -12.44243 -12.25488 -12.06741 -11.95127 -11.64445 -11.46846 -11.27665 -11.02494 -10.83879 -10.65061 -10.57069 -10.04948 -9.79182 -9.52737 -9.34045 -8.88871 -8.67250 -8.55626 -8.20717 -7.66099 -5.87926 -3.92833 2.82232 3.04843 3.39705 3.43333 3.47070 4.32307 4.44049 4.53552 4.61979 4.91879 4.97081 5.10632 5.17072 5.25283 5.36399 5.42163 5.48192 5.56503 5.69978 5.71408 5.77682 5.86018 5.96761 6.03549 6.09342 6.28288 6.48307 6.59153 6.72379 6.74436 6.81695 7.09796 7.23568 7.28527 7.44415 7.67962 7.82633 7.86822 8.20414 8.26635 8.46521 8.59132 9.10726 9.70527 11.18378 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.005207 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.991407 B = 5376.545025 C = 6206.215351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.626 5.626 4 C 0.108 3.892 5 C -0.130 4.130 6 C 0.050 3.950 7 H 0.072 0.928 8 N -0.520 5.520 9 C 0.060 3.940 10 C -0.117 4.117 11 C -0.112 4.112 12 C 0.057 3.943 13 H 0.033 0.967 14 C -0.510 4.510 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.060 3.940 23 C 0.531 3.469 24 O -0.508 6.508 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.259 0.741 41 H 0.016 0.984 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 -4.810 17.638 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.002 3.998 3 N -0.363 5.363 4 C -0.016 4.016 5 C -0.168 4.168 6 C -0.063 4.063 7 H 0.090 0.910 8 N -0.245 5.245 9 C -0.068 4.068 10 C -0.154 4.154 11 C -0.150 4.150 12 C 0.039 3.961 13 H 0.052 0.948 14 C -0.549 4.549 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.066 4.066 23 C 0.317 3.683 24 O -0.381 6.381 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.328 -5.491 16.888 19.211 hybrid contribution -0.859 1.020 -0.784 1.547 sum -8.187 -4.471 16.104 18.611 Atomic orbital electron populations 1.22167 0.96128 1.02091 1.02352 1.21280 0.94053 0.81464 1.02997 1.48250 1.67202 1.13599 1.07257 1.22007 0.99033 0.92949 0.87570 1.22811 1.01410 0.98165 0.94437 1.22262 0.95141 0.95019 0.93844 0.91042 1.62013 1.19069 1.40313 1.03140 1.22146 0.95760 0.91468 0.97400 1.21673 0.95338 1.00249 0.98183 1.21671 1.02817 0.98339 0.92139 1.18629 0.90583 0.95041 0.91885 0.94847 1.21117 0.92698 1.46170 0.94919 0.92917 1.24919 0.94938 0.95542 0.98437 1.69888 0.99571 1.49772 1.33742 0.86691 0.77813 0.78976 0.84694 1.20433 1.21367 1.20300 1.22535 1.00014 0.98302 0.85770 1.20724 0.76095 0.87224 0.84251 1.90713 1.51761 1.74764 1.20896 0.91630 0.92663 0.92179 0.90011 0.90681 0.90584 0.91573 0.88708 0.89541 0.95766 0.91885 0.93420 0.92098 0.89099 0.95184 0.93126 0.96589 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.12 1.32 6.65 -4.05 -0.03 1.29 16 3 N -0.63 -7.99 2.93 -172.41 -0.51 -8.50 16 4 C 0.11 0.99 7.35 -3.12 -0.02 0.96 16 5 C -0.13 -1.39 5.38 -25.10 -0.14 -1.53 16 6 C 0.05 0.78 2.73 -67.72 -0.18 0.59 16 7 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 8 N -0.52 -10.02 4.51 -226.70 -1.02 -11.04 16 9 C 0.06 1.02 5.07 -3.83 -0.02 1.01 16 10 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 11 C -0.11 -2.71 5.03 -26.61 -0.13 -2.84 16 12 C 0.06 1.52 2.26 -91.69 -0.21 1.32 16 13 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.51 -14.76 8.56 -34.44 -0.29 -15.05 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 17 N -0.89 -26.22 11.36 55.43 0.63 -25.59 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.06 1.40 4.54 -3.83 -0.02 1.38 16 23 C 0.53 9.15 7.63 -10.86 -0.08 9.06 16 24 O -0.51 -11.07 15.53 5.56 0.09 -10.99 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.06 6.96 -51.93 -0.36 0.70 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.88 5.95 -51.93 -0.31 0.57 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 2.05 6.04 -51.93 -0.31 1.73 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -32.77 325.03 -9.11 -41.88 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.17 Total: -2.00 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.00 Total: -5.75 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.90 Total: -45.13 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.77 -9.11 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.512 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds