Wall clock time and date at job start Mon Mar 30 2020 00:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47249 * 2 1 4 4 C 1.46764 * 124.34768 * 89.99584 * 3 2 1 5 5 C 1.54487 * 105.47130 * 162.96566 * 4 3 2 6 6 C 1.54624 * 101.76367 * 25.41916 * 5 4 3 7 7 H 1.08995 * 110.49125 * 94.01560 * 6 5 4 8 8 N 1.46907 * 110.48282 * 216.52548 * 6 5 4 9 9 C 1.46852 * 110.99780 * 314.20733 * 8 6 5 10 10 C 1.53038 * 109.51991 * 174.16427 * 9 8 6 11 11 C 1.53121 * 109.28145 * 59.17795 * 10 9 8 12 12 C 1.53116 * 109.15919 * 302.34666 * 11 10 9 13 13 H 1.09002 * 109.50351 * 297.71191 * 12 11 10 14 14 C 1.50700 * 109.53480 * 177.61205 * 12 11 10 15 15 H 1.07992 * 120.00329 * 240.09746 * 14 12 11 16 16 C 1.37881 * 119.99818 * 60.09632 * 14 12 11 17 17 N 1.31518 * 119.99934 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00022 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46951 * 60.00080 * 18 16 14 20 20 H 1.48497 * 109.47255 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47130 * 299.99920 * 18 16 14 22 22 C 1.46851 * 110.99868 * 189.99874 * 8 6 5 23 23 C 1.34418 * 124.35122 * 269.97901 * 3 2 1 24 24 O 1.21282 * 124.94279 * 0.41935 * 23 3 2 25 25 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47235 * 299.99800 * 1 2 3 27 27 H 1.09003 * 109.47117 * 60.00340 * 1 2 3 28 28 H 1.09001 * 109.47235 * 240.00200 * 2 1 3 29 29 H 1.09003 * 109.47117 * 119.99660 * 2 1 3 30 30 H 1.08997 * 110.24696 * 43.96501 * 4 3 2 31 31 H 1.09001 * 110.32469 * 281.99972 * 4 3 2 32 32 H 1.08996 * 110.96978 * 267.29301 * 5 4 3 33 33 H 1.08998 * 110.96706 * 143.53682 * 5 4 3 34 34 H 1.08996 * 109.46331 * 294.17770 * 9 8 6 35 35 H 1.09000 * 109.45938 * 54.14758 * 9 8 6 36 36 H 1.09004 * 109.50259 * 179.12052 * 10 9 8 37 37 H 1.08998 * 109.50040 * 299.19508 * 10 9 8 38 38 H 1.08997 * 109.52457 * 182.43793 * 11 10 9 39 39 H 1.09000 * 109.52188 * 62.25069 * 11 10 9 40 40 H 0.97001 * 119.99543 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.46045 * 65.82355 * 22 8 6 42 42 H 1.08998 * 109.45058 * 305.85067 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1749 3.3438 0.7488 6 6 2.7702 3.4751 -0.7378 7 1 1.9771 4.2138 -0.8535 8 7 3.9339 3.8393 -1.5571 9 6 4.7003 4.9238 -0.9300 10 6 5.9785 5.1769 -1.7325 11 6 5.6072 5.5538 -3.1694 12 6 4.7687 4.4292 -3.7832 13 1 5.3599 3.5143 -3.8223 14 6 4.3491 4.8171 -5.1776 15 1 3.3005 4.8901 -5.4254 16 6 5.3040 5.0789 -6.1372 17 7 6.5810 4.9896 -5.8356 18 14 4.7839 5.5604 -7.8655 19 1 3.9790 6.8071 -7.8109 20 1 5.9907 5.7860 -8.7009 21 1 3.9685 4.4703 -8.4588 22 6 3.5255 4.1978 -2.9214 23 6 2.2716 2.0961 -1.1097 24 8 2.1222 1.6941 -2.2442 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8319 1.5530 1.9385 31 1 1.3644 2.5312 1.6441 32 1 4.2334 3.1027 0.8452 33 1 2.9312 4.2514 1.3010 34 1 4.0971 5.8314 -0.9120 35 1 4.9615 4.6411 0.0898 36 1 6.5395 5.9923 -1.2757 37 1 6.5891 4.2740 -1.7387 38 1 6.5154 5.6928 -3.7558 39 1 5.0298 6.4783 -3.1658 40 1 7.2527 5.1734 -6.5108 41 1 2.9278 5.1089 -2.8940 42 1 2.9336 3.3878 -3.3477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:20 Heat of formation + Delta-G solvation = -55.088379 kcal Electronic energy + Delta-G solvation = -21319.545325 eV Core-core repulsion = 18298.171496 eV Total energy + Delta-G solvation = -3021.373829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66828 -39.36947 -37.48991 -35.88280 -34.33937 -32.67224 -31.72199 -29.81276 -27.92763 -26.97458 -24.65719 -24.17450 -23.35368 -21.70645 -20.41234 -20.20931 -18.49302 -17.86746 -17.64470 -16.77062 -16.44048 -15.78844 -15.59849 -15.20481 -14.92920 -14.72864 -14.45783 -14.42853 -14.05698 -14.03599 -13.60022 -13.26392 -13.15582 -12.86370 -12.83876 -12.79076 -12.58791 -12.40707 -12.16546 -11.91695 -11.73460 -11.70424 -11.37974 -11.01218 -10.82463 -10.45345 -10.37329 -9.67084 -9.17135 -8.09805 -6.24032 1.37527 1.40561 1.47984 1.55268 2.06730 2.41337 3.10198 3.16231 3.38063 3.64805 4.03859 4.12585 4.15590 4.21858 4.27598 4.33555 4.42472 4.50340 4.55179 4.61980 4.71004 4.79555 4.84331 4.89305 4.96391 4.97679 5.01771 5.09312 5.18677 5.22626 5.27318 5.40175 5.49927 5.61454 5.72412 5.93127 6.10776 6.13316 6.19449 6.33026 6.44274 6.86970 7.24583 7.43041 8.94861 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.005207 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.991407 B = 5376.545025 C = 6206.215351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 N -0.619 5.619 4 C 0.106 3.894 5 C -0.118 4.118 6 C 0.043 3.957 7 H 0.074 0.926 8 N -0.535 5.535 9 C 0.064 3.936 10 C -0.111 4.111 11 C -0.103 4.103 12 C 0.057 3.943 13 H -0.014 1.014 14 C -0.541 4.541 15 H 0.043 0.957 16 C 0.016 3.984 17 N -0.914 5.914 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.080 3.920 23 C 0.512 3.488 24 O -0.575 6.575 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.033 0.967 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.012 0.988 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -4.305 21.067 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.353 5.353 4 C -0.016 4.016 5 C -0.156 4.156 6 C -0.069 4.069 7 H 0.092 0.908 8 N -0.260 5.260 9 C -0.063 4.063 10 C -0.149 4.149 11 C -0.142 4.142 12 C 0.038 3.962 13 H 0.004 0.996 14 C -0.580 4.580 15 H 0.061 0.939 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.047 4.047 23 C 0.300 3.700 24 O -0.453 6.453 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.051 0.949 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.933 -4.991 20.397 22.447 hybrid contribution -0.680 0.786 -1.802 2.080 sum -8.613 -4.205 18.595 20.920 Atomic orbital electron populations 1.22102 0.95017 1.03203 1.01623 1.21503 0.94979 0.80515 1.03488 1.48434 1.65291 1.14191 1.07374 1.22369 1.00589 0.92382 0.86270 1.22900 1.01786 1.00572 0.90344 1.22431 0.93937 0.93981 0.96550 0.90845 1.61839 1.21126 1.41190 1.01874 1.22217 0.94005 0.91335 0.98757 1.21604 0.97100 1.00703 0.95491 1.21452 1.00598 0.97101 0.95007 1.18533 0.91760 0.93667 0.92270 0.99570 1.21469 0.92482 1.47099 0.96902 0.93877 1.25712 0.94919 0.95254 1.02422 1.70028 1.00411 1.49888 1.34970 0.85665 0.77796 0.78818 0.79691 1.19334 1.20242 1.20247 1.22035 0.97665 0.96819 0.88231 1.21219 0.76000 0.88449 0.84380 1.90672 1.54785 1.76190 1.23666 0.89701 0.90680 0.95437 0.92918 0.86731 0.87310 0.88705 0.88654 0.85936 0.94850 0.87195 0.90234 0.93401 0.92366 0.95626 0.92937 0.96956 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 10.24 71.98 0.74 -2.01 16 2 C 0.12 2.28 6.65 86.38 0.57 2.86 16 3 N -0.62 -14.58 2.93 -817.98 -2.40 -16.98 16 4 C 0.11 1.41 7.35 86.83 0.64 2.05 16 5 C -0.12 -1.98 5.38 31.65 0.17 -1.81 16 6 C 0.04 1.28 2.73 44.91 0.12 1.41 16 7 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 8 N -0.53 -20.55 4.51 -871.14 -3.93 -24.48 16 9 C 0.06 2.02 5.07 86.32 0.44 2.46 16 10 C -0.11 -4.25 6.09 30.65 0.19 -4.07 16 11 C -0.10 -5.18 5.03 30.67 0.15 -5.02 16 12 C 0.06 3.18 2.26 -11.49 -0.03 3.15 16 13 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 14 C -0.54 -32.96 8.56 25.60 0.22 -32.74 16 15 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 16 C 0.02 0.93 5.30 84.66 0.45 1.38 16 17 N -0.91 -55.77 11.36 21.45 0.24 -55.53 16 18 Si 0.96 46.53 29.54 68.60 2.03 48.56 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 C 0.08 3.92 4.54 86.32 0.39 4.31 16 23 C 0.51 17.87 7.63 87.90 0.67 18.54 16 24 O -0.57 -26.84 15.53 -3.03 -0.05 -26.89 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 1.34 7.93 -2.39 -0.02 1.32 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.64 6.96 -2.39 -0.02 1.63 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 2.53 5.95 -2.39 -0.01 2.51 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 3.27 6.16 -2.39 -0.01 3.26 16 39 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 2.75 6.04 -2.39 -0.01 2.74 16 Total: -1.00 -79.43 325.03 1.60 -77.83 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.98 Total: 6.99 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.73 Total: -9.50 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -6.08 Total: -96.99 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -79.43 1.60 -77.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.746 kcal (2) G-P(sol) polarization free energy of solvation -79.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds