Wall clock time and date at job start Mon Mar 30 2020 01:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45752 * 117.94615 * 2 1 4 4 C 1.52922 * 110.48578 * 199.07313 * 3 2 1 5 5 C 1.53342 * 108.67565 * 309.24866 * 4 3 2 6 6 C 1.53069 * 108.42527 * 67.53226 * 5 4 3 7 7 H 1.09002 * 109.40300 * 71.22794 * 6 5 4 8 8 N 1.46903 * 109.40192 * 191.05756 * 6 5 4 9 9 C 1.46840 * 111.00176 * 66.21453 * 8 6 5 10 10 C 1.53039 * 109.52533 * 185.84137 * 9 8 6 11 11 C 1.53115 * 109.27744 * 300.82098 * 10 9 8 12 12 C 1.53119 * 109.16147 * 57.65324 * 11 10 9 13 13 H 1.08998 * 109.50406 * 62.28731 * 12 11 10 14 14 C 1.50696 * 109.50285 * 182.36514 * 12 11 10 15 15 H 1.08007 * 120.00072 * 120.00429 * 14 12 11 16 16 C 1.37880 * 120.00415 * 299.99901 * 14 12 11 17 17 N 1.31512 * 120.00395 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 119.99335 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47148 * 90.00093 * 18 16 14 20 20 H 1.48504 * 109.46519 * 209.99943 * 18 16 14 21 21 H 1.48505 * 109.47248 * 329.99440 * 18 16 14 22 22 C 1.46844 * 111.00144 * 190.42830 * 8 6 5 23 23 C 1.33182 * 117.99269 * 180.02562 * 2 1 3 24 24 O 1.21283 * 118.12083 * 357.79175 * 23 2 1 25 25 H 1.08997 * 109.47208 * 89.99944 * 1 2 3 26 26 H 1.08993 * 109.47099 * 210.00474 * 1 2 3 27 27 H 1.09005 * 109.46708 * 329.99676 * 1 2 3 28 28 H 1.09000 * 109.30135 * 78.76855 * 3 2 1 29 29 H 1.08995 * 109.13794 * 319.27803 * 3 2 1 30 30 H 1.09000 * 109.60631 * 189.48998 * 4 3 2 31 31 H 1.09000 * 109.60237 * 69.00568 * 4 3 2 32 32 H 1.08999 * 109.67677 * 307.79803 * 5 4 3 33 33 H 1.09007 * 109.67154 * 187.26209 * 5 4 3 34 34 H 1.09011 * 109.46373 * 305.85878 * 9 8 6 35 35 H 1.09004 * 109.46560 * 65.82106 * 9 8 6 36 36 H 1.09003 * 109.49820 * 60.76361 * 10 9 8 37 37 H 1.08998 * 109.50437 * 180.88060 * 10 9 8 38 38 H 1.08997 * 109.52355 * 177.55609 * 11 10 9 39 39 H 1.09004 * 109.52322 * 297.68369 * 11 10 9 40 40 H 0.96998 * 119.99881 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.46218 * 294.17506 * 22 8 6 42 42 H 1.09000 * 109.46327 * 54.14200 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 -0.4681 5 6 4.2493 -0.0014 0.3397 6 6 3.5838 -1.3240 -0.0486 7 1 3.8881 -1.5997 -1.0583 8 7 4.0006 -2.3741 0.8904 9 6 3.4842 -2.1091 2.2392 10 6 4.0554 -3.1385 3.2170 11 6 3.6529 -4.5444 2.7633 12 6 4.1610 -4.7772 1.3377 13 1 5.2496 -4.7237 1.3262 14 6 3.7190 -6.1370 0.8618 15 1 3.0933 -6.2255 -0.0141 16 6 4.1135 -7.2682 1.5443 17 7 3.7282 -8.4549 1.1287 18 14 5.1953 -7.1149 3.0595 19 1 4.3407 -6.9861 4.2670 20 1 6.0479 -8.3245 3.1832 21 1 6.0576 -5.9125 2.9325 22 6 3.5868 -3.7002 0.4145 23 6 2.0901 -1.1760 -0.0005 24 8 1.4146 -2.1825 0.0402 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 2.1399 1.6997 1.0090 29 1 1.6262 1.9689 -0.6718 30 1 4.1385 2.0563 -0.3042 31 1 3.6101 0.8725 -1.5282 32 1 4.1087 0.1812 1.4050 33 1 5.3143 -0.0456 0.1118 34 1 3.7810 -1.1078 2.5516 35 1 2.3964 -2.1795 2.2321 36 1 5.1424 -3.0592 3.2350 37 1 3.6597 -2.9511 4.2152 38 1 4.0938 -5.2833 3.4323 39 1 2.5669 -4.6367 2.7835 40 1 4.0061 -9.2507 1.6087 41 1 2.4986 -3.7633 0.4158 42 1 3.9581 -3.8546 -0.5986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:35 Heat of formation + Delta-G solvation = -22.711828 kcal Electronic energy + Delta-G solvation = -21884.328776 eV Core-core repulsion = 18864.358899 eV Total energy + Delta-G solvation = -3019.969876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88985 -37.93752 -36.49830 -34.63224 -32.65050 -31.52303 -30.21574 -28.55033 -27.15127 -24.93192 -24.37427 -22.32967 -22.23123 -21.13056 -18.85984 -18.41102 -16.86270 -16.51323 -16.41195 -16.01887 -15.26312 -14.59086 -14.33471 -14.13426 -13.88742 -13.57548 -13.30519 -12.82635 -12.77274 -12.50105 -12.44441 -12.21216 -12.06202 -11.66961 -11.43972 -11.37407 -11.15842 -10.90258 -10.70617 -10.37844 -10.03691 -9.85281 -9.74225 -9.55293 -8.98544 -8.81824 -8.77086 -8.40699 -7.63157 -5.95865 -3.93641 2.75248 2.98806 3.36008 3.45922 3.50110 4.20862 4.51941 4.52543 4.56419 4.67484 4.81108 5.13002 5.20954 5.28520 5.30682 5.35882 5.44513 5.50932 5.60251 5.62618 5.64698 5.77912 5.87494 5.94569 6.02946 6.15535 6.29955 6.35588 6.37789 6.44620 6.63975 6.84621 6.91665 6.98969 7.31603 7.40611 7.46980 7.61608 7.78683 7.96846 8.31807 8.66424 9.09446 9.67207 11.17742 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.005632 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.623678 B = 4970.710622 C = 5260.408309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.115 3.885 4 C -0.135 4.135 5 C -0.116 4.116 6 C 0.074 3.926 7 H 0.110 0.890 8 N -0.512 5.512 9 C 0.053 3.947 10 C -0.116 4.116 11 C -0.122 4.122 12 C 0.022 3.978 13 H 0.031 0.969 14 C -0.508 4.508 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.905 5.905 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.264 1.264 22 C 0.060 3.940 23 C 0.484 3.516 24 O -0.532 6.532 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.262 0.738 41 H 0.069 0.931 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 23.187 -0.685 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C -0.009 4.009 4 C -0.173 4.173 5 C -0.154 4.154 6 C -0.039 4.039 7 H 0.127 0.873 8 N -0.235 5.235 9 C -0.075 4.075 10 C -0.154 4.154 11 C -0.159 4.159 12 C 0.002 3.998 13 H 0.049 0.951 14 C -0.546 4.546 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.544 5.544 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.066 4.066 23 C 0.270 3.730 24 O -0.408 6.408 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.081 22.432 -0.606 22.466 hybrid contribution -0.450 0.039 0.825 0.941 sum -1.532 22.471 0.220 22.524 Atomic orbital electron populations 1.21646 0.80240 1.03064 1.01727 1.47479 1.07156 1.06250 1.73907 1.21389 0.93460 0.84752 1.01252 1.21886 0.94490 1.00031 1.00934 1.21763 1.00926 0.92045 1.00675 1.21843 0.87914 0.94204 0.99905 0.87252 1.62517 1.57345 1.02677 1.00969 1.22134 0.97511 0.98337 0.89490 1.21618 1.00859 0.96293 0.96660 1.22018 1.00871 0.93439 0.99595 1.19156 0.96378 0.93921 0.90315 0.95057 1.21023 1.31768 0.88405 1.13405 0.90917 1.24982 0.95692 0.95201 0.97329 1.69909 1.46057 0.97732 1.40652 0.86827 0.80892 0.76812 0.83582 1.20833 1.22738 1.18865 1.22444 1.00804 0.85003 0.98389 1.21756 0.92490 0.82726 0.75985 1.90723 1.66109 1.35169 1.48806 0.92912 0.90189 0.91724 0.91980 0.90964 0.89625 0.90867 0.90854 0.89783 0.91970 0.94656 0.91846 0.92892 0.93679 0.92490 0.92833 0.91313 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.24 59.85 0.61 1.44 16 2 N -0.61 -7.36 3.20 -182.91 -0.59 -7.95 16 3 C 0.11 0.91 6.32 -4.49 -0.03 0.88 16 4 C -0.14 -1.01 6.02 -26.59 -0.16 -1.17 16 5 C -0.12 -1.21 5.45 -26.52 -0.14 -1.35 16 6 C 0.07 1.08 2.48 -69.08 -0.17 0.91 16 7 H 0.11 1.58 7.98 -51.93 -0.41 1.17 16 8 N -0.51 -9.29 4.60 -228.34 -1.05 -10.34 16 9 C 0.05 0.92 4.76 -3.84 -0.02 0.90 16 10 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 11 C -0.12 -2.82 4.73 -26.61 -0.13 -2.95 16 12 C 0.02 0.54 1.85 -91.69 -0.17 0.37 16 13 H 0.03 0.81 7.21 -51.93 -0.37 0.44 16 14 C -0.51 -15.03 9.15 -34.44 -0.32 -15.34 16 15 H 0.07 2.34 7.99 -52.48 -0.42 1.92 16 16 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 17 N -0.90 -28.78 13.96 55.43 0.77 -28.01 16 18 Si 0.89 22.97 24.35 -169.99 -4.14 18.83 16 19 H -0.28 -7.10 6.89 56.52 0.39 -6.72 16 20 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 22 C 0.06 1.33 4.24 -3.84 -0.02 1.32 16 23 C 0.48 7.63 5.83 -11.95 -0.07 7.56 16 24 O -0.53 -10.81 12.25 5.55 0.07 -10.74 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 27 H 0.06 0.50 8.01 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.07 0.78 6.04 -51.93 -0.31 0.46 16 33 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.06 0.90 6.06 -51.92 -0.31 0.59 16 35 H 0.04 0.68 6.66 -51.93 -0.35 0.33 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 1.09 3.34 -51.93 -0.17 0.92 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 41 H 0.07 1.70 5.54 -51.93 -0.29 1.41 16 42 H 0.06 1.37 8.01 -51.93 -0.42 0.96 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -34.31 307.00 -8.00 -42.31 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.83 Total: -0.93 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.87 Total: -7.81 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.86 Total: -46.29 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.14 Total: 18.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.31 -8.00 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.599 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds