Wall clock time and date at job start Mon Mar 30 2020 01:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45752 * 117.94615 * 2 1 4 4 C 1.52922 * 110.48578 * 199.07313 * 3 2 1 5 5 C 1.53342 * 108.67565 * 309.24866 * 4 3 2 6 6 C 1.53069 * 108.42527 * 67.53226 * 5 4 3 7 7 H 1.09002 * 109.40300 * 71.22794 * 6 5 4 8 8 N 1.46903 * 109.40192 * 191.05756 * 6 5 4 9 9 C 1.46840 * 111.00176 * 66.21453 * 8 6 5 10 10 C 1.53039 * 109.52533 * 185.84137 * 9 8 6 11 11 C 1.53115 * 109.27744 * 300.82098 * 10 9 8 12 12 C 1.53119 * 109.16147 * 57.65324 * 11 10 9 13 13 H 1.08998 * 109.50406 * 62.28731 * 12 11 10 14 14 C 1.50696 * 109.50285 * 182.36514 * 12 11 10 15 15 H 1.08007 * 120.00072 * 120.00429 * 14 12 11 16 16 C 1.37880 * 120.00415 * 299.99901 * 14 12 11 17 17 N 1.31512 * 120.00395 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 119.99335 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47148 * 90.00093 * 18 16 14 20 20 H 1.48504 * 109.46519 * 209.99943 * 18 16 14 21 21 H 1.48505 * 109.47248 * 329.99440 * 18 16 14 22 22 C 1.46844 * 111.00144 * 190.42830 * 8 6 5 23 23 C 1.33182 * 117.99269 * 180.02562 * 2 1 3 24 24 O 1.21283 * 118.12083 * 357.79175 * 23 2 1 25 25 H 1.08997 * 109.47208 * 89.99944 * 1 2 3 26 26 H 1.08993 * 109.47099 * 210.00474 * 1 2 3 27 27 H 1.09005 * 109.46708 * 329.99676 * 1 2 3 28 28 H 1.09000 * 109.30135 * 78.76855 * 3 2 1 29 29 H 1.08995 * 109.13794 * 319.27803 * 3 2 1 30 30 H 1.09000 * 109.60631 * 189.48998 * 4 3 2 31 31 H 1.09000 * 109.60237 * 69.00568 * 4 3 2 32 32 H 1.08999 * 109.67677 * 307.79803 * 5 4 3 33 33 H 1.09007 * 109.67154 * 187.26209 * 5 4 3 34 34 H 1.09011 * 109.46373 * 305.85878 * 9 8 6 35 35 H 1.09004 * 109.46560 * 65.82106 * 9 8 6 36 36 H 1.09003 * 109.49820 * 60.76361 * 10 9 8 37 37 H 1.08998 * 109.50437 * 180.88060 * 10 9 8 38 38 H 1.08997 * 109.52355 * 177.55609 * 11 10 9 39 39 H 1.09004 * 109.52322 * 297.68369 * 11 10 9 40 40 H 0.96998 * 119.99881 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.46218 * 294.17506 * 22 8 6 42 42 H 1.09000 * 109.46327 * 54.14200 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 -0.4681 5 6 4.2493 -0.0014 0.3397 6 6 3.5838 -1.3240 -0.0486 7 1 3.8881 -1.5997 -1.0583 8 7 4.0006 -2.3741 0.8904 9 6 3.4842 -2.1091 2.2392 10 6 4.0554 -3.1385 3.2170 11 6 3.6529 -4.5444 2.7633 12 6 4.1610 -4.7772 1.3377 13 1 5.2496 -4.7237 1.3262 14 6 3.7190 -6.1370 0.8618 15 1 3.0933 -6.2255 -0.0141 16 6 4.1135 -7.2682 1.5443 17 7 3.7282 -8.4549 1.1287 18 14 5.1953 -7.1149 3.0595 19 1 4.3407 -6.9861 4.2670 20 1 6.0479 -8.3245 3.1832 21 1 6.0576 -5.9125 2.9325 22 6 3.5868 -3.7002 0.4145 23 6 2.0901 -1.1760 -0.0005 24 8 1.4146 -2.1825 0.0402 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 2.1399 1.6997 1.0090 29 1 1.6262 1.9689 -0.6718 30 1 4.1385 2.0563 -0.3042 31 1 3.6101 0.8725 -1.5282 32 1 4.1087 0.1812 1.4050 33 1 5.3143 -0.0456 0.1118 34 1 3.7810 -1.1078 2.5516 35 1 2.3964 -2.1795 2.2321 36 1 5.1424 -3.0592 3.2350 37 1 3.6597 -2.9511 4.2152 38 1 4.0938 -5.2833 3.4323 39 1 2.5669 -4.6367 2.7835 40 1 4.0061 -9.2507 1.6087 41 1 2.4986 -3.7633 0.4158 42 1 3.9581 -3.8546 -0.5986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:34 Heat of formation + Delta-G solvation = -48.798568 kcal Electronic energy + Delta-G solvation = -21885.459982 eV Core-core repulsion = 18864.358899 eV Total energy + Delta-G solvation = -3021.101082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.05768 -39.43101 -37.55026 -36.10637 -34.48708 -32.90203 -32.05575 -29.67286 -28.05263 -26.92904 -25.65599 -23.72122 -23.25344 -22.71539 -20.63284 -19.40289 -18.87812 -17.81428 -17.52913 -17.30449 -16.66158 -16.06489 -15.75239 -15.36948 -15.27201 -14.94470 -14.77152 -14.40692 -14.08083 -13.87046 -13.81318 -13.57826 -13.16916 -12.96878 -12.79510 -12.66544 -12.57325 -12.23448 -12.03623 -11.84888 -11.76682 -11.65422 -11.43173 -11.03456 -11.02779 -10.75523 -10.62260 -9.73823 -9.11968 -8.31212 -6.35260 1.28812 1.34735 1.47314 1.56141 2.05861 2.32473 2.90520 3.03813 3.56225 3.76405 3.88265 3.96555 4.06278 4.09847 4.25725 4.34839 4.41361 4.46869 4.49347 4.55659 4.62747 4.72703 4.76216 4.80820 4.88916 4.91168 4.92960 5.03467 5.09316 5.10892 5.21032 5.23363 5.35635 5.42260 5.52714 5.61505 5.72425 6.05276 6.09412 6.33238 6.44862 6.71319 7.18054 7.29593 8.86517 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.005632 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.623678 B = 4970.710622 C = 5260.408309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.104 3.896 4 C -0.128 4.128 5 C -0.107 4.107 6 C 0.068 3.932 7 H 0.103 0.897 8 N -0.509 5.509 9 C 0.057 3.943 10 C -0.111 4.111 11 C -0.121 4.121 12 C 0.023 3.977 13 H 0.030 0.970 14 C -0.522 4.522 15 H 0.022 0.978 16 C 0.010 3.990 17 N -0.953 5.953 18 Si 0.958 3.042 19 H -0.268 1.268 20 H -0.295 1.295 21 H -0.241 1.241 22 C 0.076 3.924 23 C 0.477 3.523 24 O -0.593 6.593 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.266 0.734 41 H 0.038 0.962 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 27.623 1.123 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.338 5.338 3 C -0.017 4.017 4 C -0.166 4.166 5 C -0.145 4.145 6 C -0.044 4.044 7 H 0.121 0.879 8 N -0.232 5.232 9 C -0.070 4.070 10 C -0.149 4.149 11 C -0.159 4.159 12 C 0.004 3.996 13 H 0.048 0.952 14 C -0.560 4.560 15 H 0.040 0.960 16 C -0.187 4.187 17 N -0.594 5.594 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.223 1.223 21 H -0.165 1.165 22 C -0.052 4.052 23 C 0.264 3.736 24 O -0.474 6.474 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.141 0.859 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.030 0.970 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.614 26.962 1.191 26.995 hybrid contribution -1.100 -1.292 0.113 1.700 sum -0.486 25.670 1.304 25.708 Atomic orbital electron populations 1.21738 0.79672 1.03250 1.02199 1.47593 1.07839 1.06740 1.71629 1.21805 0.93770 0.82774 1.03329 1.21919 0.94145 1.00318 1.00217 1.21770 1.01307 0.89993 1.01417 1.22041 0.87913 0.95415 0.99025 0.87893 1.62457 1.57270 1.01327 1.02174 1.22175 0.96084 1.00116 0.88669 1.21613 1.01778 0.93136 0.98353 1.21899 0.99328 0.96776 0.97857 1.19056 0.96039 0.92155 0.92337 0.95185 1.21326 1.31059 0.91532 1.12079 0.95990 1.25934 0.97276 0.94444 1.01022 1.70069 1.47879 0.98807 1.42640 0.85702 0.79112 0.77681 0.79123 1.19415 1.22270 1.16502 1.22009 0.98555 0.87435 0.97198 1.21886 0.92834 0.83145 0.75733 1.90713 1.67266 1.37534 1.51892 0.92351 0.93553 0.87868 0.89945 0.88170 0.85929 0.91038 0.90313 0.88687 0.87734 0.96973 0.90550 0.89896 0.94279 0.94744 0.92506 0.94391 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 10.24 127.77 1.31 2.81 16 2 N -0.61 -13.30 3.20 -851.87 -2.73 -16.03 16 3 C 0.10 1.17 6.32 86.49 0.55 1.72 16 4 C -0.13 -1.29 6.02 30.68 0.18 -1.11 16 5 C -0.11 -1.80 5.45 30.73 0.17 -1.63 16 6 C 0.07 1.92 2.48 44.03 0.11 2.03 16 7 H 0.10 2.99 7.98 -2.39 -0.02 2.97 16 8 N -0.51 -18.15 4.60 -876.33 -4.03 -22.18 16 9 C 0.06 1.86 4.76 86.33 0.41 2.28 16 10 C -0.11 -3.86 6.09 30.65 0.19 -3.68 16 11 C -0.12 -5.59 4.73 30.67 0.15 -5.44 16 12 C 0.02 1.20 1.85 -11.49 -0.02 1.18 16 13 H 0.03 1.55 7.21 -2.39 -0.02 1.54 16 14 C -0.52 -32.76 9.15 25.60 0.23 -32.53 16 15 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 16 C 0.01 0.60 5.45 84.66 0.46 1.06 16 17 N -0.95 -63.38 13.96 21.45 0.30 -63.08 16 18 Si 0.96 47.77 24.35 68.60 1.67 49.44 16 19 H -0.27 -12.75 6.89 99.48 0.69 -12.06 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.24 -11.11 6.53 99.48 0.65 -10.46 16 22 C 0.08 3.55 4.24 86.33 0.37 3.91 16 23 C 0.48 14.98 5.83 87.74 0.51 15.50 16 24 O -0.59 -25.57 12.25 -3.04 -0.04 -25.61 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.27 7.13 -2.39 -0.02 1.25 16 27 H 0.10 1.27 8.01 -2.38 -0.02 1.26 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 32 H 0.08 1.26 6.04 -2.39 -0.01 1.25 16 33 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.10 2.57 6.06 -2.38 -0.01 2.56 16 35 H 0.01 0.46 6.66 -2.38 -0.02 0.44 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 1.83 3.34 -2.39 -0.01 1.82 16 39 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 41 H 0.04 2.03 5.54 -2.39 -0.01 2.02 16 42 H 0.05 2.25 8.01 -2.39 -0.02 2.23 16 Total: -1.00 -82.17 307.00 0.70 -81.47 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.92 Total: 9.89 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.61 Total: -13.90 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -6.46 Total: -101.29 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.67 Total: 49.44 kcal Total: -82.17 0.70 -81.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.675 kcal (2) G-P(sol) polarization free energy of solvation -82.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds