Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46626 * 2 1 4 4 C 1.46501 * 120.00506 * 269.99957 * 3 2 1 5 5 C 1.50703 * 109.47293 * 270.00604 * 4 3 2 6 6 H 1.07998 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99843 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99634 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00405 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47392 * 89.99408 * 9 7 5 11 11 H 1.48494 * 109.47312 * 209.99879 * 9 7 5 12 12 H 1.48502 * 109.46718 * 329.99705 * 9 7 5 13 13 C 1.34778 * 119.99780 * 90.00291 * 3 2 1 14 14 O 1.21284 * 120.00004 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00034 * 359.72469 * 13 3 2 16 16 N 1.46898 * 109.47196 * 174.83217 * 15 13 3 17 17 C 1.47168 * 110.99980 * 303.63396 * 16 15 13 18 18 C 1.52101 * 109.50080 * 198.66927 * 17 16 15 19 19 C 1.52380 * 110.31646 * 306.93367 * 18 17 16 20 20 H 1.09003 * 114.97236 * 164.97276 * 19 18 17 21 21 C 1.50889 * 119.18281 * 308.97059 * 19 18 17 22 22 C 1.52405 * 118.99592 * 19.80167 * 19 18 17 23 23 H 1.08999 * 117.38816 * 143.73319 * 22 19 18 24 24 C 1.46745 * 111.00147 * 66.71469 * 16 15 13 25 25 H 1.09000 * 109.47336 * 299.99696 * 1 2 3 26 26 H 1.08997 * 109.47196 * 59.99808 * 1 2 3 27 27 H 1.08999 * 109.46825 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46920 * 240.00542 * 2 1 3 29 29 H 1.08994 * 109.47499 * 119.99765 * 2 1 3 30 30 H 1.09005 * 109.46739 * 30.00391 * 4 3 2 31 31 H 1.08996 * 109.47387 * 150.00171 * 4 3 2 32 32 H 0.97002 * 119.99988 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46926 * 294.83025 * 15 13 3 34 34 H 1.08997 * 109.47507 * 54.82770 * 15 13 3 35 35 H 1.08998 * 109.61393 * 319.32333 * 17 16 15 36 36 H 1.08995 * 109.61337 * 79.85739 * 17 16 15 37 37 H 1.08997 * 110.14957 * 186.07147 * 18 17 16 38 38 H 1.08999 * 108.27238 * 66.60614 * 18 17 16 39 39 H 1.09002 * 117.27273 * 1.27438 * 21 19 18 40 40 H 1.08998 * 117.58944 * 216.42111 * 21 19 18 41 41 H 1.08994 * 109.36357 * 300.73160 * 24 16 15 42 42 H 1.09005 * 109.35664 * 60.33498 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1489 2.3900 -2.8780 8 7 5.3911 2.1838 -3.2574 9 14 3.0126 3.4356 -3.9291 10 1 3.1160 4.8558 -3.5079 11 1 3.4055 3.3126 -5.3558 12 1 1.6129 2.9695 -3.7591 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9859 1.3082 2.4723 16 7 2.4211 2.1611 3.5863 17 6 3.8372 2.5347 3.4425 18 6 4.3777 3.0030 4.7849 19 6 3.4891 4.0994 5.3596 20 1 3.6466 4.3124 6.4170 21 6 3.1341 5.2860 4.4978 22 6 2.0625 4.2411 4.8426 23 1 1.2950 4.5288 5.5611 24 6 1.5846 3.3626 3.6867 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5815 1.6879 -2.0283 31 1 2.0954 3.1412 -1.1383 32 1 5.7170 2.5737 -4.0836 33 1 0.9203 1.0999 2.5689 34 1 2.5425 0.3713 2.4929 35 1 4.4086 1.6754 3.0915 36 1 3.9288 3.3542 2.7297 37 1 5.3926 3.3832 4.6692 38 1 4.3874 2.1514 5.4653 39 1 3.5188 5.2955 3.4779 40 1 3.0632 6.2593 4.9832 41 1 1.6473 3.9254 2.7554 42 1 0.5494 3.0687 3.8602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595808202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = 0.118570 kcal Electronic energy + Delta-G solvation = -21427.702490 eV Core-core repulsion = 18408.722614 eV Total energy + Delta-G solvation = -3018.979876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24716 -38.61086 -35.69134 -34.55840 -32.72626 -31.10107 -30.36899 -28.86192 -27.00960 -24.72223 -23.21157 -23.00356 -21.73825 -21.17286 -18.72392 -18.02009 -16.95198 -16.53152 -16.37685 -15.45762 -15.31876 -14.58609 -14.24072 -14.08922 -13.77907 -13.59164 -13.48619 -12.70047 -12.53186 -12.46629 -12.24171 -12.20065 -11.84991 -11.55167 -11.33670 -11.12309 -11.03002 -10.85842 -10.62153 -10.53105 -10.41035 -10.16530 -9.87249 -9.67754 -9.62876 -9.48591 -8.61484 -7.76615 -7.72888 -6.11294 -4.09965 3.25871 3.26520 3.32476 3.34283 3.80228 3.82693 4.21605 4.36961 4.82451 4.91857 5.00071 5.12403 5.17057 5.22770 5.25513 5.32383 5.44007 5.52452 5.62346 5.69177 5.73129 5.84772 5.90195 5.96838 6.03744 6.05324 6.10348 6.12985 6.23291 6.35681 6.37654 6.42835 6.56167 6.67565 6.91468 7.16902 7.22903 7.33392 7.58944 8.22482 8.44442 8.89078 8.94758 9.49185 11.02091 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.005910 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.531677 B = 4736.754709 C = 5390.267098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.215 3.785 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.476 3.524 14 O -0.540 6.540 15 C 0.033 3.967 16 N -0.508 5.508 17 C 0.036 3.964 18 C -0.082 4.082 19 C -0.130 4.130 20 H 0.094 0.906 21 C -0.185 4.185 22 C -0.144 4.144 23 H 0.102 0.898 24 C 0.067 3.933 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 -1.779 14.020 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.094 3.906 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.262 3.738 14 O -0.419 6.419 15 C -0.099 4.099 16 N -0.231 5.231 17 C -0.091 4.091 18 C -0.120 4.120 19 C -0.149 4.149 20 H 0.112 0.888 21 C -0.222 4.222 22 C -0.162 4.162 23 H 0.120 0.880 24 C -0.061 4.061 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.517 -1.408 14.300 16.703 hybrid contribution -0.384 0.919 -1.464 1.771 sum -8.901 -0.488 12.836 15.627 Atomic orbital electron populations 1.22222 0.96707 1.01646 1.02161 1.21462 0.93438 0.83840 1.03185 1.48111 1.63475 1.13365 1.07253 1.19630 0.97267 0.93314 0.80359 1.21307 0.95302 1.32868 1.07074 0.90861 1.24857 0.94977 0.95808 0.97361 1.69897 1.15113 1.45020 1.23549 0.86851 0.81462 0.81565 0.79807 1.19995 1.21044 1.19132 1.21689 0.78390 0.87456 0.86216 1.90587 1.46073 1.18287 1.86914 1.22373 1.02670 0.97561 0.87279 1.62731 1.03662 1.17958 1.38743 1.22181 0.88139 1.01606 0.97219 1.20771 0.97571 0.96746 0.96906 1.21575 0.96514 0.98310 0.98507 0.88782 1.22986 1.03919 0.93618 1.01714 1.22214 0.92087 1.01379 1.00540 0.88039 1.21812 0.95967 0.90714 0.97586 0.92973 0.92326 0.91889 0.89767 0.91232 0.95428 0.94784 0.92567 0.88467 0.88217 0.91244 0.90880 0.91355 0.91529 0.88281 0.89347 0.91008 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.10 1.58 5.95 -4.04 -0.02 1.56 16 3 N -0.59 -11.77 2.46 -175.06 -0.43 -12.20 16 4 C 0.22 5.21 4.23 -5.19 -0.02 5.19 16 5 C -0.53 -15.04 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 9 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.48 9.29 7.05 -10.99 -0.08 9.21 16 14 O -0.54 -12.49 11.32 5.55 0.06 -12.42 16 15 C 0.03 0.48 4.49 -4.98 -0.02 0.46 16 16 N -0.51 -7.68 4.87 -236.66 -1.15 -8.83 16 17 C 0.04 0.58 4.42 -4.14 -0.02 0.56 16 18 C -0.08 -1.10 6.17 -27.51 -0.17 -1.27 16 19 C -0.13 -1.65 6.08 -92.30 -0.56 -2.22 16 20 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 21 C -0.19 -2.47 9.58 -27.48 -0.26 -2.74 16 22 C -0.14 -1.89 6.37 -90.70 -0.58 -2.46 16 23 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 24 C 0.07 0.99 5.08 -3.99 -0.02 0.97 16 25 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 30 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 31 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 34 H 0.10 1.34 7.11 -51.93 -0.37 0.97 16 35 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 36 H 0.07 1.43 4.94 -51.93 -0.26 1.17 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.57 7.24 -51.93 -0.38 1.19 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.29 5.64 -51.93 -0.29 0.99 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -32.43 323.31 -9.27 -41.71 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.91 Total: 2.58 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.82 Total: -5.79 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.81 Total: -47.91 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.06 Total: -12.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.43 -9.27 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595808202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.826 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds