Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46626 * 2 1 4 4 C 1.46501 * 120.00506 * 269.99957 * 3 2 1 5 5 C 1.50703 * 109.47293 * 270.00604 * 4 3 2 6 6 H 1.07998 * 119.99737 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99843 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99634 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00405 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47392 * 89.99408 * 9 7 5 11 11 H 1.48494 * 109.47312 * 209.99879 * 9 7 5 12 12 H 1.48502 * 109.46718 * 329.99705 * 9 7 5 13 13 C 1.34778 * 119.99780 * 90.00291 * 3 2 1 14 14 O 1.21284 * 120.00004 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00034 * 359.72469 * 13 3 2 16 16 N 1.46898 * 109.47196 * 174.83217 * 15 13 3 17 17 C 1.47168 * 110.99980 * 303.63396 * 16 15 13 18 18 C 1.52101 * 109.50080 * 198.66927 * 17 16 15 19 19 C 1.52380 * 110.31646 * 306.93367 * 18 17 16 20 20 H 1.09003 * 114.97236 * 164.97276 * 19 18 17 21 21 C 1.50889 * 119.18281 * 308.97059 * 19 18 17 22 22 C 1.52405 * 118.99592 * 19.80167 * 19 18 17 23 23 H 1.08999 * 117.38816 * 143.73319 * 22 19 18 24 24 C 1.46745 * 111.00147 * 66.71469 * 16 15 13 25 25 H 1.09000 * 109.47336 * 299.99696 * 1 2 3 26 26 H 1.08997 * 109.47196 * 59.99808 * 1 2 3 27 27 H 1.08999 * 109.46825 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46920 * 240.00542 * 2 1 3 29 29 H 1.08994 * 109.47499 * 119.99765 * 2 1 3 30 30 H 1.09005 * 109.46739 * 30.00391 * 4 3 2 31 31 H 1.08996 * 109.47387 * 150.00171 * 4 3 2 32 32 H 0.97002 * 119.99988 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46926 * 294.83025 * 15 13 3 34 34 H 1.08997 * 109.47507 * 54.82770 * 15 13 3 35 35 H 1.08998 * 109.61393 * 319.32333 * 17 16 15 36 36 H 1.08995 * 109.61337 * 79.85739 * 17 16 15 37 37 H 1.08997 * 110.14957 * 186.07147 * 18 17 16 38 38 H 1.08999 * 108.27238 * 66.60614 * 18 17 16 39 39 H 1.09002 * 117.27273 * 1.27438 * 21 19 18 40 40 H 1.08998 * 117.58944 * 216.42111 * 21 19 18 41 41 H 1.08994 * 109.36357 * 300.73160 * 24 16 15 42 42 H 1.09005 * 109.35664 * 60.33498 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1489 2.3900 -2.8780 8 7 5.3911 2.1838 -3.2574 9 14 3.0126 3.4356 -3.9291 10 1 3.1160 4.8558 -3.5079 11 1 3.4055 3.3126 -5.3558 12 1 1.6129 2.9695 -3.7591 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9859 1.3082 2.4723 16 7 2.4211 2.1611 3.5863 17 6 3.8372 2.5347 3.4425 18 6 4.3777 3.0030 4.7849 19 6 3.4891 4.0994 5.3596 20 1 3.6466 4.3124 6.4170 21 6 3.1341 5.2860 4.4978 22 6 2.0625 4.2411 4.8426 23 1 1.2950 4.5288 5.5611 24 6 1.5846 3.3626 3.6867 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5815 1.6879 -2.0283 31 1 2.0954 3.1412 -1.1383 32 1 5.7170 2.5737 -4.0836 33 1 0.9203 1.0999 2.5689 34 1 2.5425 0.3713 2.4929 35 1 4.4086 1.6754 3.0915 36 1 3.9288 3.3542 2.7297 37 1 5.3926 3.3832 4.6692 38 1 4.3874 2.1514 5.4653 39 1 3.5188 5.2955 3.4779 40 1 3.0632 6.2593 4.9832 41 1 1.6473 3.9254 2.7554 42 1 0.5494 3.0687 3.8602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595808202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = -22.028174 kcal Electronic energy + Delta-G solvation = -21428.662845 eV Core-core repulsion = 18408.722614 eV Total energy + Delta-G solvation = -3019.940231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57912 -39.92844 -37.16932 -35.85958 -34.86374 -32.28997 -31.87526 -30.32931 -28.58592 -25.97291 -24.75927 -24.24815 -23.31405 -22.24867 -20.12351 -19.32265 -19.12469 -17.96127 -17.58188 -16.95013 -16.63278 -16.25261 -15.66134 -15.52125 -15.21717 -14.79860 -14.71085 -14.55923 -13.85069 -13.79344 -13.55130 -13.50422 -13.33984 -13.22327 -12.62351 -12.56291 -12.40975 -12.20051 -12.10651 -11.96149 -11.82948 -11.77851 -11.59283 -11.18924 -10.87285 -10.84023 -10.66985 -9.40446 -9.12350 -8.38101 -6.42744 1.27520 1.31226 1.39816 1.75804 2.26136 2.32801 2.69941 2.96219 3.08249 3.67149 3.79995 3.86461 4.03565 4.05948 4.14897 4.24950 4.32680 4.40760 4.51498 4.53952 4.64446 4.70436 4.76369 4.80319 4.86580 4.91621 4.94261 4.98814 5.01835 5.02895 5.10537 5.26640 5.33717 5.34844 5.38311 5.44323 5.65230 5.91684 5.99731 6.20924 6.58334 6.71504 7.18251 7.41530 8.78884 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.005910 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.531677 B = 4736.754709 C = 5390.267098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.599 5.599 4 C 0.226 3.774 5 C -0.533 4.533 6 H 0.027 0.973 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.240 1.240 13 C 0.466 3.534 14 O -0.585 6.585 15 C 0.042 3.958 16 N -0.497 5.497 17 C 0.038 3.962 18 C -0.081 4.081 19 C -0.124 4.124 20 H 0.122 0.878 21 C -0.196 4.196 22 C -0.143 4.143 23 H 0.129 0.871 24 C 0.065 3.935 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.044 0.956 31 H 0.013 0.987 32 H 0.268 0.732 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.035 0.965 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 -2.509 15.831 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.103 3.897 5 C -0.571 4.571 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.163 1.163 13 C 0.254 3.746 14 O -0.466 6.466 15 C -0.090 4.090 16 N -0.219 5.219 17 C -0.090 4.090 18 C -0.118 4.118 19 C -0.142 4.142 20 H 0.140 0.860 21 C -0.233 4.233 22 C -0.161 4.161 23 H 0.147 0.853 24 C -0.063 4.063 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.053 0.947 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.184 -2.184 16.133 19.751 hybrid contribution 0.528 1.097 -2.000 2.341 sum -10.655 -1.087 14.133 17.733 Atomic orbital electron populations 1.22144 0.93844 1.03698 1.02019 1.21789 0.95714 0.81109 1.03927 1.48252 1.63721 1.15186 1.05929 1.19231 0.94647 0.92804 0.82969 1.21539 0.97041 1.31958 1.06586 0.95452 1.25835 0.96676 0.97192 0.98972 1.70049 1.17352 1.46614 1.24475 0.85731 0.80463 0.78895 0.77952 1.20458 1.19803 1.16302 1.22689 0.77196 0.87153 0.87545 1.90593 1.47807 1.20527 1.87667 1.22545 1.05025 0.97324 0.84067 1.62849 1.02958 1.18025 1.38019 1.22092 0.89204 0.99702 0.97991 1.20771 0.97781 0.97792 0.95480 1.21688 0.95848 0.97105 0.99583 0.85965 1.22916 1.04923 0.95204 1.00222 1.22336 0.92899 1.00566 1.00343 0.85301 1.21836 0.97217 0.90460 0.96779 0.91790 0.93796 0.88670 0.91255 0.88379 0.93784 0.96864 0.92278 0.85020 0.86400 0.92253 0.95102 0.91181 0.89731 0.92037 0.87297 0.94713 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.64 16 2 C 0.10 2.76 5.95 86.38 0.51 3.27 16 3 N -0.60 -23.97 2.46 -826.15 -2.03 -26.00 16 4 C 0.23 11.14 4.23 85.63 0.36 11.50 16 5 C -0.53 -31.71 9.94 25.60 0.25 -31.45 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.67 5.47 84.65 0.46 1.14 16 8 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 13 C 0.47 18.37 7.05 87.66 0.62 18.99 16 14 O -0.58 -28.44 11.32 -3.04 -0.03 -28.48 16 15 C 0.04 1.15 4.49 85.56 0.38 1.54 16 16 N -0.50 -14.34 4.87 -902.64 -4.40 -18.73 16 17 C 0.04 1.26 4.42 85.96 0.38 1.64 16 18 C -0.08 -2.07 6.17 30.09 0.19 -1.89 16 19 C -0.12 -2.89 6.08 -11.88 -0.07 -2.96 16 20 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 21 C -0.20 -5.16 9.58 30.11 0.29 -4.87 16 22 C -0.14 -3.47 6.37 -10.84 -0.07 -3.54 16 23 H 0.13 2.44 8.14 -2.39 -0.02 2.43 16 24 C 0.06 1.84 5.08 86.28 0.44 2.28 16 25 H 0.06 1.22 7.36 -2.39 -0.02 1.20 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.10 2.21 6.30 -2.39 -0.02 2.20 16 30 H 0.04 2.02 7.13 -2.38 -0.02 2.00 16 31 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16 32 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 33 H 0.13 2.77 7.34 -2.38 -0.02 2.75 16 34 H 0.12 2.86 7.11 -2.39 -0.02 2.84 16 35 H 0.06 2.01 7.95 -2.39 -0.02 1.99 16 36 H 0.03 1.29 4.94 -2.39 -0.01 1.28 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.10 7.24 -2.39 -0.02 2.08 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.03 1.28 5.64 -2.39 -0.01 1.27 16 42 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -75.90 323.31 1.14 -74.76 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.93 Total: 18.38 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 4.48 Total: -7.00 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.13 Total: -104.84 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.03 Total: -28.48 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -75.90 1.14 -74.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595808202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.733 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds