Wall clock time and date at job start Mon Mar 30 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47096 * 2 1 4 4 C 1.46499 * 120.00195 * 270.00191 * 3 2 1 5 5 C 1.50697 * 109.47233 * 89.99825 * 4 3 2 6 6 H 1.07997 * 120.00075 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00107 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00094 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99956 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47384 * 89.99392 * 9 7 5 11 11 H 1.48494 * 109.47077 * 209.99775 * 9 7 5 12 12 H 1.48503 * 109.47085 * 329.99887 * 9 7 5 13 13 C 1.34775 * 119.99873 * 89.99705 * 3 2 1 14 14 O 1.21284 * 120.00328 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99797 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46783 * 174.56347 * 15 13 3 17 17 C 1.47166 * 110.99998 * 303.62007 * 16 15 13 18 18 C 1.53199 * 108.43405 * 199.74938 * 17 16 15 19 19 C 1.52980 * 109.52243 * 305.52639 * 18 17 16 20 20 H 1.08997 * 115.50968 * 232.29310 * 19 18 17 21 21 C 1.53605 * 115.77148 * 89.43757 * 19 18 17 22 22 C 1.52358 * 59.74801 * 249.47533 * 21 19 18 23 23 H 1.08999 * 115.76636 * 253.07876 * 22 21 19 24 24 C 1.46729 * 111.00271 * 66.72208 * 16 15 13 25 25 H 1.08996 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47343 * 300.00085 * 1 2 3 27 27 H 1.09008 * 109.47137 * 59.99654 * 1 2 3 28 28 H 1.08992 * 109.46993 * 120.00141 * 2 1 3 29 29 H 1.08998 * 109.46864 * 240.00734 * 2 1 3 30 30 H 1.09001 * 109.46876 * 210.00098 * 4 3 2 31 31 H 1.09001 * 109.46827 * 330.00203 * 4 3 2 32 32 H 0.96998 * 119.99917 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47190 * 294.56157 * 15 13 3 34 34 H 1.09002 * 109.47068 * 54.56512 * 15 13 3 35 35 H 1.08997 * 109.61730 * 319.32603 * 17 16 15 36 36 H 1.08998 * 109.61787 * 79.86476 * 17 16 15 37 37 H 1.09004 * 109.14549 * 185.72921 * 18 17 16 38 38 H 1.08995 * 109.84420 * 65.76108 * 18 17 16 39 39 H 1.08995 * 117.52526 * 142.05092 * 21 19 18 40 40 H 1.09005 * 117.52140 * 356.88700 * 21 19 18 41 41 H 1.09007 * 109.30482 * 300.47508 * 24 16 15 42 42 H 1.09002 * 109.30389 * 59.85772 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1159 2.7254 -1.0957 7 6 0.9952 3.5058 -2.8774 8 7 -0.1009 4.1253 -3.2573 9 14 2.5361 3.6048 -3.9286 10 1 2.5401 2.4882 -4.9076 11 1 2.5575 4.8999 -4.6548 12 1 3.7358 3.5049 -3.0591 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.4322 2.1572 3.5857 17 6 3.8476 2.5314 3.4362 18 6 4.3797 2.9707 4.8040 19 6 3.4880 4.0786 5.3676 20 1 4.0071 4.9825 5.6862 21 6 2.2970 3.6101 6.2170 22 6 2.0643 4.2331 4.8463 23 1 1.6575 5.2443 4.8483 24 6 1.5957 3.3580 3.6920 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.0644 2.7986 -1.1383 31 1 2.5505 1.3452 -2.0284 32 1 -0.1091 4.6340 -4.0831 33 1 0.9272 1.0970 2.5735 34 1 2.5494 0.3693 2.4889 35 1 4.4176 1.6728 3.0813 36 1 3.9359 3.3521 2.7243 37 1 5.3962 3.3467 4.6882 38 1 4.3826 2.1232 5.4894 39 1 2.0370 4.2058 7.0919 40 1 2.1400 2.5359 6.3153 41 1 1.6580 3.9240 2.7624 42 1 0.5604 3.0622 3.8614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595808203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:02 Heat of formation + Delta-G solvation = 0.533602 kcal Electronic energy + Delta-G solvation = -21387.485821 eV Core-core repulsion = 18368.523942 eV Total energy + Delta-G solvation = -3018.961879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16564 -38.53912 -35.68865 -34.51515 -32.66481 -31.10880 -30.22949 -28.87011 -27.06180 -24.67378 -23.14744 -22.77167 -21.84321 -21.18380 -18.74801 -18.16373 -16.95198 -16.55443 -16.29413 -15.40027 -15.31554 -14.59807 -14.31447 -14.00380 -13.68515 -13.44174 -13.20244 -12.69957 -12.53050 -12.45467 -12.19998 -12.15863 -11.68111 -11.63092 -11.40310 -11.19219 -11.08918 -10.82081 -10.66354 -10.42714 -10.36338 -10.11972 -9.90074 -9.65116 -9.52448 -9.43955 -8.60471 -7.79675 -7.72430 -6.10095 -4.08306 3.24895 3.26203 3.33473 3.37449 3.80832 3.86595 4.14111 4.38211 4.76576 4.95931 4.99563 5.08839 5.21219 5.25420 5.32395 5.37212 5.52302 5.62682 5.67051 5.73417 5.75183 5.79622 5.84959 5.96692 6.08059 6.10563 6.14479 6.19615 6.28550 6.33283 6.40601 6.51548 6.63213 6.81064 6.94634 7.15911 7.22531 7.34369 7.60195 8.22759 8.45788 8.90388 8.95876 9.50593 11.03106 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.005418 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.724863 B = 5166.424998 C = 5556.431327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.592 5.592 4 C 0.214 3.786 5 C -0.524 4.524 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.477 3.523 14 O -0.539 6.539 15 C 0.033 3.967 16 N -0.512 5.512 17 C 0.039 3.961 18 C -0.080 4.080 19 C -0.148 4.148 20 H 0.096 0.904 21 C -0.174 4.174 22 C -0.136 4.136 23 H 0.099 0.901 24 C 0.066 3.934 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -7.353 14.437 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.324 5.324 4 C 0.093 3.907 5 C -0.563 4.563 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.263 3.737 14 O -0.418 6.418 15 C -0.098 4.098 16 N -0.234 5.234 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.166 4.166 20 H 0.114 0.886 21 C -0.211 4.211 22 C -0.154 4.154 23 H 0.117 0.883 24 C -0.061 4.061 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.684 -6.909 14.726 17.231 hybrid contribution 0.563 0.576 -1.508 1.710 sum 6.247 -6.333 13.218 15.932 Atomic orbital electron populations 1.22223 0.95887 1.01022 1.03731 1.21436 0.94949 0.83223 1.01729 1.48130 1.63586 1.13346 1.07289 1.19662 0.98188 0.92608 0.80198 1.21325 0.97265 1.30629 1.07045 0.90616 1.24862 0.95924 0.94841 0.97419 1.69893 1.27171 1.33061 1.23517 0.86880 0.84370 0.77859 0.80817 1.20152 1.21002 1.18977 1.21653 0.78537 0.87322 0.86176 1.90594 1.46573 1.17692 1.86892 1.22370 1.02998 0.97177 0.87284 1.62731 1.03553 1.18319 1.38830 1.22395 0.88281 1.01204 0.96960 1.21136 0.97378 0.96758 0.96534 1.22217 0.90066 1.00144 1.04189 0.88553 1.23055 1.03005 1.01436 0.93578 1.21922 0.98637 0.99899 0.94968 0.88259 1.21626 0.96034 0.90607 0.97865 0.92710 0.93182 0.90282 0.91673 0.90800 0.94327 0.95918 0.92608 0.88213 0.88474 0.91841 0.90710 0.91776 0.91492 0.89811 0.88239 0.90561 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.11 1.66 6.00 -4.04 -0.02 1.64 16 3 N -0.59 -11.74 2.46 -175.06 -0.43 -12.17 16 4 C 0.21 5.15 4.27 -5.20 -0.02 5.13 16 5 C -0.52 -14.75 9.47 -34.44 -0.33 -15.08 16 6 H 0.08 2.33 7.67 -52.49 -0.40 1.93 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.48 9.28 7.05 -10.98 -0.08 9.20 16 14 O -0.54 -12.50 11.31 5.55 0.06 -12.44 16 15 C 0.03 0.49 4.49 -4.97 -0.02 0.47 16 16 N -0.51 -7.55 4.66 -236.34 -1.10 -8.65 16 17 C 0.04 0.58 4.69 -3.58 -0.02 0.56 16 18 C -0.08 -0.99 6.09 -26.64 -0.16 -1.15 16 19 C -0.15 -1.84 6.28 -90.62 -0.57 -2.41 16 20 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 21 C -0.17 -2.02 9.76 -26.75 -0.26 -2.28 16 22 C -0.14 -1.84 6.08 -91.64 -0.56 -2.40 16 23 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 24 C 0.07 1.04 5.14 -4.31 -0.02 1.01 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.75 7.39 -51.93 -0.38 0.37 16 27 H 0.08 1.50 7.26 -51.92 -0.38 1.12 16 28 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 29 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 30 H 0.04 1.01 6.48 -51.93 -0.34 0.68 16 31 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.10 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.10 1.19 7.10 -51.93 -0.37 0.82 16 35 H 0.06 0.89 7.95 -51.93 -0.41 0.47 16 36 H 0.07 1.36 5.91 -51.93 -0.31 1.05 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.48 5.72 -51.93 -0.30 1.18 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -32.06 323.35 -9.20 -41.26 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.93 Total: 2.56 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.78 Total: -5.53 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.76 Total: -47.57 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.06 -9.20 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595808203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.791 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds