Wall clock time and date at job start Mon Mar 30 2020 00:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47096 * 2 1 4 4 C 1.46499 * 120.00195 * 270.00191 * 3 2 1 5 5 C 1.50697 * 109.47233 * 89.99825 * 4 3 2 6 6 H 1.07997 * 120.00075 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00107 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00094 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99956 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47384 * 89.99392 * 9 7 5 11 11 H 1.48494 * 109.47077 * 209.99775 * 9 7 5 12 12 H 1.48503 * 109.47085 * 329.99887 * 9 7 5 13 13 C 1.34775 * 119.99873 * 89.99705 * 3 2 1 14 14 O 1.21284 * 120.00328 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99797 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46783 * 174.56347 * 15 13 3 17 17 C 1.47166 * 110.99998 * 303.62007 * 16 15 13 18 18 C 1.53199 * 108.43405 * 199.74938 * 17 16 15 19 19 C 1.52980 * 109.52243 * 305.52639 * 18 17 16 20 20 H 1.08997 * 115.50968 * 232.29310 * 19 18 17 21 21 C 1.53605 * 115.77148 * 89.43757 * 19 18 17 22 22 C 1.52358 * 59.74801 * 249.47533 * 21 19 18 23 23 H 1.08999 * 115.76636 * 253.07876 * 22 21 19 24 24 C 1.46729 * 111.00271 * 66.72208 * 16 15 13 25 25 H 1.08996 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47343 * 300.00085 * 1 2 3 27 27 H 1.09008 * 109.47137 * 59.99654 * 1 2 3 28 28 H 1.08992 * 109.46993 * 120.00141 * 2 1 3 29 29 H 1.08998 * 109.46864 * 240.00734 * 2 1 3 30 30 H 1.09001 * 109.46876 * 210.00098 * 4 3 2 31 31 H 1.09001 * 109.46827 * 330.00203 * 4 3 2 32 32 H 0.96998 * 119.99917 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47190 * 294.56157 * 15 13 3 34 34 H 1.09002 * 109.47068 * 54.56512 * 15 13 3 35 35 H 1.08997 * 109.61730 * 319.32603 * 17 16 15 36 36 H 1.08998 * 109.61787 * 79.86476 * 17 16 15 37 37 H 1.09004 * 109.14549 * 185.72921 * 18 17 16 38 38 H 1.08995 * 109.84420 * 65.76108 * 18 17 16 39 39 H 1.08995 * 117.52526 * 142.05092 * 21 19 18 40 40 H 1.09005 * 117.52140 * 356.88700 * 21 19 18 41 41 H 1.09007 * 109.30482 * 300.47508 * 24 16 15 42 42 H 1.09002 * 109.30389 * 59.85772 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1159 2.7254 -1.0957 7 6 0.9952 3.5058 -2.8774 8 7 -0.1009 4.1253 -3.2573 9 14 2.5361 3.6048 -3.9286 10 1 2.5401 2.4882 -4.9076 11 1 2.5575 4.8999 -4.6548 12 1 3.7358 3.5049 -3.0591 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.4322 2.1572 3.5857 17 6 3.8476 2.5314 3.4362 18 6 4.3797 2.9707 4.8040 19 6 3.4880 4.0786 5.3676 20 1 4.0071 4.9825 5.6862 21 6 2.2970 3.6101 6.2170 22 6 2.0643 4.2331 4.8463 23 1 1.6575 5.2443 4.8483 24 6 1.5957 3.3580 3.6920 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.0644 2.7986 -1.1383 31 1 2.5505 1.3452 -2.0284 32 1 -0.1091 4.6340 -4.0831 33 1 0.9272 1.0970 2.5735 34 1 2.5494 0.3693 2.4889 35 1 4.4176 1.6728 3.0813 36 1 3.9359 3.3521 2.7243 37 1 5.3962 3.3467 4.6882 38 1 4.3826 2.1232 5.4894 39 1 2.0370 4.2058 7.0919 40 1 2.1400 2.5359 6.3153 41 1 1.6580 3.9240 2.7624 42 1 0.5604 3.0622 3.8614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595808203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:01 Heat of formation + Delta-G solvation = -21.168067 kcal Electronic energy + Delta-G solvation = -21388.426875 eV Core-core repulsion = 18368.523942 eV Total energy + Delta-G solvation = -3019.902934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50058 -39.81779 -37.17177 -35.78894 -34.79276 -32.22788 -31.79272 -30.37588 -28.63793 -25.91542 -24.53731 -24.15306 -23.42083 -22.17206 -20.14377 -19.45917 -19.06780 -17.95942 -17.55616 -16.90789 -16.57712 -16.15200 -15.77306 -15.50702 -14.92961 -14.71241 -14.63541 -14.42471 -14.05961 -13.80651 -13.58386 -13.34045 -13.25088 -13.02889 -12.77507 -12.62301 -12.44695 -12.20780 -12.06951 -12.03397 -11.82154 -11.63165 -11.46206 -11.18030 -10.82448 -10.78981 -10.56612 -9.40183 -9.13684 -8.34352 -6.37876 1.28373 1.33041 1.43123 1.76317 2.29067 2.35404 2.80183 2.98734 2.99783 3.70850 3.75149 3.93591 4.03066 4.15758 4.18728 4.33564 4.42602 4.46671 4.53238 4.56521 4.64801 4.65503 4.74613 4.82166 4.91279 4.93370 4.96657 5.02285 5.04818 5.08087 5.14488 5.18513 5.35873 5.45046 5.45592 5.51154 5.68862 5.94845 6.00511 6.24971 6.63553 6.72934 7.22227 7.43494 8.82436 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.005418 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.724863 B = 5166.424998 C = 5556.431327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.600 5.600 4 C 0.223 3.777 5 C -0.525 4.525 6 H 0.031 0.969 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.252 1.252 11 H -0.284 1.284 12 H -0.259 1.259 13 C 0.467 3.533 14 O -0.585 6.585 15 C 0.042 3.958 16 N -0.498 5.498 17 C 0.040 3.960 18 C -0.076 4.076 19 C -0.153 4.153 20 H 0.107 0.893 21 C -0.148 4.148 22 C -0.161 4.161 23 H 0.097 0.903 24 C 0.070 3.930 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.015 0.985 31 H 0.044 0.956 32 H 0.267 0.733 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.029 0.971 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 -9.799 16.092 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.101 3.899 5 C -0.563 4.563 6 H 0.050 0.950 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.769 3.231 10 H -0.176 1.176 11 H -0.210 1.210 12 H -0.183 1.183 13 C 0.255 3.745 14 O -0.466 6.466 15 C -0.089 4.089 16 N -0.220 5.220 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.171 4.171 20 H 0.125 0.875 21 C -0.185 4.185 22 C -0.179 4.179 23 H 0.115 0.885 24 C -0.058 4.058 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.047 0.953 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.425 -9.404 16.405 20.315 hybrid contribution -0.075 1.348 -1.971 2.389 sum 7.350 -8.056 14.435 18.091 Atomic orbital electron populations 1.22149 0.96277 1.02670 1.01122 1.21807 0.94559 0.80833 1.04598 1.48264 1.63803 1.15126 1.05940 1.19291 0.95086 0.92684 0.82875 1.21544 0.97482 1.30894 1.06415 0.95022 1.25831 0.99475 0.94432 0.99101 1.70053 1.29772 1.34487 1.24441 0.85744 0.79802 0.78510 0.79078 1.17589 1.20995 1.18289 1.22668 0.77281 0.87001 0.87539 1.90597 1.48376 1.19942 1.87674 1.22549 1.04502 0.97789 0.84094 1.62842 1.03496 1.17580 1.38056 1.22373 0.88451 1.00271 0.97699 1.21142 0.97760 0.97281 0.95138 1.22365 0.89813 1.00837 1.04120 0.87499 1.23078 1.01161 1.01612 0.92667 1.21886 1.00348 0.99843 0.95857 0.88485 1.21488 0.96711 0.90839 0.96719 0.88818 0.93508 0.95172 0.86959 0.89703 0.96705 0.93835 0.92444 0.86822 0.84688 0.90678 0.94746 0.90606 0.89817 0.87881 0.88056 0.95270 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 10.24 71.98 0.74 -4.04 16 2 C 0.10 2.87 6.00 86.38 0.52 3.39 16 3 N -0.60 -23.59 2.46 -826.15 -2.03 -25.62 16 4 C 0.22 10.86 4.27 85.63 0.37 11.23 16 5 C -0.52 -30.80 9.47 25.60 0.24 -30.56 16 6 H 0.03 2.08 7.67 -2.91 -0.02 2.05 16 7 C 0.01 0.54 5.47 84.65 0.46 1.01 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 45.04 27.47 68.60 1.88 46.93 16 10 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.26 -11.96 6.54 99.48 0.65 -11.31 16 13 C 0.47 18.21 7.05 87.66 0.62 18.82 16 14 O -0.58 -28.36 11.31 -3.04 -0.03 -28.39 16 15 C 0.04 1.14 4.49 85.56 0.38 1.53 16 16 N -0.50 -13.99 4.66 -901.63 -4.20 -18.19 16 17 C 0.04 1.14 4.69 86.32 0.40 1.54 16 18 C -0.08 -1.69 6.09 30.65 0.19 -1.50 16 19 C -0.15 -3.53 6.28 -10.79 -0.07 -3.60 16 20 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 21 C -0.15 -3.06 9.76 30.59 0.30 -2.77 16 22 C -0.16 -4.30 6.08 -11.46 -0.07 -4.37 16 23 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 24 C 0.07 2.24 5.14 86.08 0.44 2.68 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.36 7.39 -2.39 -0.02 1.34 16 27 H 0.03 1.16 7.26 -2.38 -0.02 1.14 16 28 H 0.11 2.08 6.29 -2.39 -0.02 2.06 16 29 H 0.08 2.18 7.89 -2.39 -0.02 2.16 16 30 H 0.01 0.80 6.48 -2.39 -0.02 0.78 16 31 H 0.04 1.94 7.32 -2.39 -0.02 1.92 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.11 2.83 7.36 -2.39 -0.02 2.82 16 34 H 0.14 2.68 7.10 -2.39 -0.02 2.66 16 35 H 0.07 1.93 7.95 -2.39 -0.02 1.91 16 36 H 0.03 1.28 5.91 -2.39 -0.01 1.27 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.03 1.21 5.72 -2.38 -0.01 1.20 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -75.47 323.35 1.38 -74.10 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.93 Total: 17.91 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 4.52 Total: -6.64 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -5.93 Total: -103.91 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.03 Total: -28.39 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -75.47 1.38 -74.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595808203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.930 kcal (2) G-P(sol) polarization free energy of solvation -75.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds