Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50703 * 109.46877 * 90.00092 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46844 * 60.00490 * 8 6 4 10 10 H 1.48496 * 109.47153 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47045 * 300.00555 * 8 6 4 12 12 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 13 13 O 1.21281 * 120.00220 * 179.72597 * 12 2 1 14 14 C 1.50706 * 120.00080 * 359.72107 * 12 2 1 15 15 C 1.52992 * 109.47274 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.46954 * 180.02562 * 15 14 12 17 17 C 1.47162 * 111.00615 * 66.04325 * 16 15 14 18 18 C 1.52986 * 108.59468 * 199.59118 * 17 16 15 19 19 C 1.52976 * 109.63670 * 305.87612 * 18 17 16 20 20 H 1.08992 * 115.51188 * 232.25457 * 19 18 17 21 21 C 1.53604 * 115.98317 * 89.08739 * 19 18 17 22 22 C 1.52361 * 59.74859 * 249.57203 * 21 19 18 23 23 H 1.09000 * 116.26641 * 253.29207 * 22 21 19 24 24 C 1.46744 * 111.00005 * 189.14537 * 16 15 14 25 25 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 26 26 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 27 27 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 28 28 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 29 29 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 30 30 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46762 * 300.00389 * 14 12 2 32 32 H 1.08998 * 109.46924 * 59.99727 * 14 12 2 33 33 H 1.09004 * 109.47116 * 299.99649 * 15 14 12 34 34 H 1.08993 * 109.47352 * 59.99893 * 15 14 12 35 35 H 1.09004 * 109.61748 * 319.32465 * 17 16 15 36 36 H 1.09003 * 109.61502 * 79.85809 * 17 16 15 37 37 H 1.09004 * 109.44168 * 65.92389 * 18 17 16 38 38 H 1.09003 * 109.44889 * 185.82335 * 18 17 16 39 39 H 1.08991 * 117.52861 * 356.99246 * 21 19 18 40 40 H 1.09001 * 117.51943 * 142.16055 * 21 19 18 41 41 H 1.09002 * 109.30152 * 300.47516 * 24 16 15 42 42 H 1.09002 * 109.30433 * 59.85333 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.5542 3.6176 0.6732 8 14 3.4376 3.4170 3.4340 9 1 4.2394 2.3818 4.1347 10 1 4.1801 4.7029 3.4340 11 1 2.1398 3.5952 4.1334 12 6 2.1389 -1.1671 -0.0057 13 8 3.3517 -1.1672 -0.0107 14 6 1.3854 -2.4723 -0.0057 15 6 2.3795 -3.6352 -0.0121 16 7 1.6450 -4.9073 -0.0128 17 6 0.8938 -5.0821 -1.2661 18 6 -0.2032 -6.1233 -1.0362 19 6 0.4151 -7.4074 -0.4806 20 1 0.1595 -8.3215 -1.0163 21 6 0.5297 -7.4922 1.0489 22 6 1.7816 -7.3514 0.1920 23 1 2.4030 -8.2418 0.0958 24 6 2.5542 -6.0396 0.1989 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0285 -0.5138 30 1 4.0310 4.4435 0.8505 31 1 0.7624 -2.5322 0.8867 32 1 0.7550 -2.5278 -0.8932 33 1 3.0028 -3.5755 -0.9045 34 1 3.0096 -3.5794 0.8755 35 1 0.4427 -4.1335 -1.5577 36 1 1.5669 -5.4268 -2.0511 37 1 -0.9303 -5.7330 -0.3239 38 1 -0.7018 -6.3399 -1.9810 39 1 0.2143 -6.6235 1.6266 40 1 0.3446 -8.4601 1.5149 41 1 3.2999 -6.0564 -0.5959 42 1 3.0576 -5.9229 1.1586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595812201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = -9.611404 kcal Electronic energy + Delta-G solvation = -20422.406208 eV Core-core repulsion = 17403.004408 eV Total energy + Delta-G solvation = -3019.401799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89555 -38.84539 -35.72501 -34.73122 -32.62340 -31.45508 -30.81950 -27.82715 -26.13462 -25.41761 -24.28691 -22.94806 -21.48538 -21.21656 -18.70257 -18.23787 -16.90714 -16.52263 -15.89064 -15.60859 -15.34451 -14.86190 -14.69690 -14.14647 -13.95553 -13.75317 -13.36943 -12.61310 -12.48872 -12.37394 -12.14792 -12.12046 -11.98938 -11.78369 -11.45465 -11.39040 -11.12585 -10.89671 -10.85379 -10.55872 -10.46552 -10.13705 -10.08014 -9.85826 -9.62187 -8.86507 -8.41591 -8.36114 -7.61330 -6.02502 -4.07342 3.33339 3.37474 3.39427 3.48234 3.52719 3.71707 4.17660 4.46120 4.48500 4.68398 4.77440 4.89844 5.11509 5.18080 5.23083 5.29351 5.31773 5.33035 5.37069 5.60254 5.62527 5.63618 5.68489 5.75309 5.82979 5.88936 5.90172 5.96104 6.05867 6.11040 6.17363 6.20105 6.25846 7.01325 7.04677 7.09138 7.46280 7.56923 7.94026 8.25675 8.45325 8.92200 9.12883 9.57762 11.05580 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.003644 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.811916 B = 7682.912480 C = 7935.013686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.134 4.134 15 C 0.072 3.928 16 N -0.536 5.536 17 C 0.045 3.955 18 C -0.083 4.083 19 C -0.150 4.150 20 H 0.098 0.902 21 C -0.167 4.167 22 C -0.146 4.146 23 H 0.100 0.900 24 C 0.084 3.916 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -19.899 -3.317 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.175 4.175 15 C -0.055 4.055 16 N -0.261 5.261 17 C -0.082 4.082 18 C -0.120 4.120 19 C -0.168 4.168 20 H 0.116 0.884 21 C -0.203 4.203 22 C -0.165 4.165 23 H 0.118 0.882 24 C -0.043 4.043 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.580 -19.676 -2.971 21.670 hybrid contribution 0.682 0.342 0.328 0.830 sum -7.898 -19.334 -2.643 21.052 Atomic orbital electron populations 1.21634 0.81451 1.02644 1.00308 1.48158 1.06183 1.07882 1.71331 1.19274 0.92536 0.78170 0.97454 1.21412 1.36515 1.06273 0.92330 0.92502 1.24943 0.95357 0.96392 0.97461 1.69928 1.38401 1.14374 1.30799 0.86549 0.78365 0.77804 0.84654 1.20162 1.21178 1.20236 1.20313 0.88069 0.85184 0.77414 1.90663 1.14017 1.87378 1.50366 1.21653 0.99236 0.92653 1.03917 1.21789 0.94602 0.86714 1.02445 1.62208 1.27219 1.01950 1.34723 1.22249 0.96051 0.99412 0.90531 1.21110 0.97293 0.92926 1.00711 1.22257 0.99813 0.99233 0.95507 0.88414 1.23053 1.01440 1.02750 0.93100 1.21953 0.90626 0.98348 1.05527 0.88154 1.21375 0.93204 0.88415 1.01353 0.93879 0.92296 0.90840 0.93898 0.95086 0.92678 0.88724 0.89812 0.93973 0.89818 0.90297 0.94427 0.90845 0.91495 0.87850 0.89552 0.94395 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.60 -12.98 2.86 -182.95 -0.52 -13.50 16 3 C 0.24 6.52 5.17 -5.19 -0.03 6.50 16 4 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.50 10.55 7.67 -10.98 -0.08 10.46 16 13 O -0.55 -13.86 15.56 5.56 0.09 -13.77 16 14 C -0.13 -2.00 4.22 -27.88 -0.12 -2.12 16 15 C 0.07 1.05 4.24 -3.83 -0.02 1.03 16 16 N -0.54 -6.43 4.45 -235.03 -1.05 -7.48 16 17 C 0.05 0.48 5.42 -3.69 -0.02 0.46 16 18 C -0.08 -0.74 6.09 -26.75 -0.16 -0.90 16 19 C -0.15 -1.33 6.27 -90.62 -0.57 -1.90 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.17 -1.51 9.78 -26.74 -0.26 -1.77 16 22 C -0.15 -1.38 6.08 -91.64 -0.56 -1.93 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 24 C 0.08 0.93 5.38 -4.30 -0.02 0.90 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.77 6.45 -51.93 -0.33 0.44 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.04 1.29 7.41 -51.93 -0.38 0.90 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.32 7.41 -51.93 -0.38 0.94 16 32 H 0.08 1.07 6.22 -51.93 -0.32 0.74 16 33 H 0.04 0.65 8.08 -51.93 -0.42 0.24 16 34 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 35 H 0.08 0.81 5.90 -51.93 -0.31 0.50 16 36 H 0.04 0.40 7.97 -51.93 -0.41 -0.01 16 37 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 42 H 0.08 0.89 8.12 -51.93 -0.42 0.46 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -32.75 335.31 -9.53 -42.28 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.17 Total: -2.26 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.65 Total: -1.18 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.83 Total: -47.20 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.75 -9.53 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595812201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.668 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds