Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50703 * 109.46877 * 90.00092 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46844 * 60.00490 * 8 6 4 10 10 H 1.48496 * 109.47153 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47045 * 300.00555 * 8 6 4 12 12 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 13 13 O 1.21281 * 120.00220 * 179.72597 * 12 2 1 14 14 C 1.50706 * 120.00080 * 359.72107 * 12 2 1 15 15 C 1.52992 * 109.47274 * 180.02562 * 14 12 2 16 16 N 1.46896 * 109.46954 * 180.02562 * 15 14 12 17 17 C 1.47162 * 111.00615 * 66.04325 * 16 15 14 18 18 C 1.52986 * 108.59468 * 199.59118 * 17 16 15 19 19 C 1.52976 * 109.63670 * 305.87612 * 18 17 16 20 20 H 1.08992 * 115.51188 * 232.25457 * 19 18 17 21 21 C 1.53604 * 115.98317 * 89.08739 * 19 18 17 22 22 C 1.52361 * 59.74859 * 249.57203 * 21 19 18 23 23 H 1.09000 * 116.26641 * 253.29207 * 22 21 19 24 24 C 1.46744 * 111.00005 * 189.14537 * 16 15 14 25 25 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 26 26 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 27 27 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 28 28 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 29 29 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 30 30 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46762 * 300.00389 * 14 12 2 32 32 H 1.08998 * 109.46924 * 59.99727 * 14 12 2 33 33 H 1.09004 * 109.47116 * 299.99649 * 15 14 12 34 34 H 1.08993 * 109.47352 * 59.99893 * 15 14 12 35 35 H 1.09004 * 109.61748 * 319.32465 * 17 16 15 36 36 H 1.09003 * 109.61502 * 79.85809 * 17 16 15 37 37 H 1.09004 * 109.44168 * 65.92389 * 18 17 16 38 38 H 1.09003 * 109.44889 * 185.82335 * 18 17 16 39 39 H 1.08991 * 117.52861 * 356.99246 * 21 19 18 40 40 H 1.09001 * 117.51943 * 142.16055 * 21 19 18 41 41 H 1.09002 * 109.30152 * 300.47516 * 24 16 15 42 42 H 1.09002 * 109.30433 * 59.85333 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.5542 3.6176 0.6732 8 14 3.4376 3.4170 3.4340 9 1 4.2394 2.3818 4.1347 10 1 4.1801 4.7029 3.4340 11 1 2.1398 3.5952 4.1334 12 6 2.1389 -1.1671 -0.0057 13 8 3.3517 -1.1672 -0.0107 14 6 1.3854 -2.4723 -0.0057 15 6 2.3795 -3.6352 -0.0121 16 7 1.6450 -4.9073 -0.0128 17 6 0.8938 -5.0821 -1.2661 18 6 -0.2032 -6.1233 -1.0362 19 6 0.4151 -7.4074 -0.4806 20 1 0.1595 -8.3215 -1.0163 21 6 0.5297 -7.4922 1.0489 22 6 1.7816 -7.3514 0.1920 23 1 2.4030 -8.2418 0.0958 24 6 2.5542 -6.0396 0.1989 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0285 -0.5138 30 1 4.0310 4.4435 0.8505 31 1 0.7624 -2.5322 0.8867 32 1 0.7550 -2.5278 -0.8932 33 1 3.0028 -3.5755 -0.9045 34 1 3.0096 -3.5794 0.8755 35 1 0.4427 -4.1335 -1.5577 36 1 1.5669 -5.4268 -2.0511 37 1 -0.9303 -5.7330 -0.3239 38 1 -0.7018 -6.3399 -1.9810 39 1 0.2143 -6.6235 1.6266 40 1 0.3446 -8.4601 1.5149 41 1 3.2999 -6.0564 -0.5959 42 1 3.0576 -5.9229 1.1586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595812201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = -30.776299 kcal Electronic energy + Delta-G solvation = -20423.323987 eV Core-core repulsion = 17403.004408 eV Total energy + Delta-G solvation = -3020.319578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95731 -40.27376 -36.83715 -36.39431 -34.73962 -32.34886 -32.00063 -29.70445 -27.43315 -26.79350 -25.32173 -24.57682 -22.54452 -22.14717 -19.94067 -19.38747 -18.70301 -18.12439 -17.11992 -16.97532 -16.83718 -16.31111 -15.93878 -15.53152 -15.08233 -14.74642 -14.54331 -14.21374 -13.85851 -13.70175 -13.44911 -13.34165 -13.23765 -13.05035 -13.00152 -12.77424 -12.58888 -12.36581 -12.19437 -12.13887 -11.90870 -11.72352 -11.34316 -10.78337 -10.64985 -10.60835 -10.58507 -9.42047 -9.33179 -8.23120 -6.38462 1.36258 1.40748 1.48134 1.83662 2.27450 2.41554 2.82640 3.00164 3.06273 3.72379 3.82658 3.89131 3.99384 4.04719 4.18078 4.31220 4.39823 4.43270 4.47490 4.49091 4.65099 4.72179 4.75056 4.84202 4.89610 4.94776 4.98305 5.00919 5.05670 5.06326 5.13672 5.21560 5.23799 5.35965 5.47801 5.55546 5.83923 6.04131 6.05571 6.11499 6.68842 6.79192 7.27416 7.48277 8.83818 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.003644 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.811916 B = 7682.912480 C = 7935.013686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.259 1.259 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.113 4.113 15 C 0.080 3.920 16 N -0.533 5.533 17 C 0.041 3.959 18 C -0.080 4.080 19 C -0.147 4.147 20 H 0.113 0.887 21 C -0.165 4.165 22 C -0.154 4.154 23 H 0.113 0.887 24 C 0.081 3.919 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.065 0.935 28 H -0.004 1.004 29 H 0.023 0.977 30 H 0.268 0.732 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -21.438 -2.668 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.183 1.183 12 C 0.283 3.717 13 O -0.485 6.485 14 C -0.153 4.153 15 C -0.048 4.048 16 N -0.258 5.258 17 C -0.086 4.086 18 C -0.118 4.118 19 C -0.166 4.166 20 H 0.131 0.869 21 C -0.202 4.202 22 C -0.172 4.172 23 H 0.131 0.869 24 C -0.047 4.047 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.014 0.986 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.850 -21.238 -2.328 23.962 hybrid contribution 1.371 0.797 0.066 1.588 sum -9.479 -20.441 -2.262 22.645 Atomic orbital electron populations 1.21946 0.77726 1.04069 1.02635 1.48202 1.08514 1.06367 1.71134 1.18746 0.91059 0.80514 0.96000 1.21701 1.36967 1.06630 0.93087 0.92819 1.25892 0.94842 0.96398 1.02133 1.70050 1.38883 1.14820 1.33167 0.85450 0.78906 0.77348 0.79007 1.20336 1.20263 1.18330 1.21382 0.87780 0.86751 0.75808 1.90632 1.16802 1.88288 1.52730 1.21551 0.98774 0.88738 1.06229 1.21589 0.94367 0.88190 1.00682 1.62237 1.26814 1.00974 1.35740 1.22370 0.96267 1.00397 0.89589 1.21125 0.96614 0.92305 1.01733 1.22389 0.98864 0.99894 0.95407 0.86859 1.23052 1.00901 1.02943 0.93317 1.21959 0.91054 0.97659 1.06543 0.86917 1.21416 0.93392 0.89049 1.00841 0.91025 0.88656 0.91652 0.98590 0.95851 0.92361 0.86725 0.86617 0.95711 0.91953 0.89710 0.94798 0.90832 0.89612 0.89152 0.88166 0.94898 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.31 2.86 -851.11 -2.43 -28.74 16 3 C 0.26 14.27 5.17 85.63 0.44 14.71 16 4 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 8 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 C 0.49 20.82 7.67 87.66 0.67 21.49 16 13 O -0.60 -31.97 15.56 -3.03 -0.05 -32.01 16 14 C -0.11 -3.18 4.22 29.85 0.13 -3.05 16 15 C 0.08 2.30 4.24 86.30 0.37 2.67 16 16 N -0.53 -12.08 4.45 -897.51 -4.00 -16.08 16 17 C 0.04 0.77 5.42 86.25 0.47 1.24 16 18 C -0.08 -1.19 6.09 30.58 0.19 -1.00 16 19 C -0.15 -2.20 6.27 -10.80 -0.07 -2.26 16 20 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 21 C -0.17 -2.62 9.78 30.59 0.30 -2.32 16 22 C -0.15 -2.61 6.08 -11.45 -0.07 -2.68 16 23 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 24 C 0.08 1.72 5.38 86.08 0.46 2.18 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 2.13 6.45 -2.39 -0.02 2.11 16 27 H 0.06 2.05 8.07 -2.38 -0.02 2.03 16 28 H 0.00 -0.26 7.41 -2.39 -0.02 -0.28 16 29 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 30 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.11 2.84 7.41 -2.39 -0.02 2.83 16 32 H 0.12 2.56 6.22 -2.39 -0.01 2.54 16 33 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 34 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 35 H 0.08 1.47 5.90 -2.38 -0.01 1.46 16 36 H 0.03 0.67 7.97 -2.39 -0.02 0.65 16 37 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.03 0.73 8.13 -2.39 -0.02 0.71 16 42 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 Total: -1.00 -73.98 335.31 1.71 -72.27 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.98 Total: 10.33 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.90 Total: 3.58 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -6.14 Total: -101.67 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.05 Total: -32.01 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.98 1.71 -72.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595812201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.499 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds