Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99879 * 2 1 4 4 C 1.46898 * 110.99760 * 123.94905 * 2 1 3 5 5 C 1.50701 * 115.55244 * 43.36683 * 4 2 1 6 6 O 1.21277 * 119.99872 * 225.99143 * 5 4 2 7 7 N 1.34775 * 119.99665 * 45.99096 * 5 4 2 8 8 C 1.46929 * 120.63151 * 356.29553 * 7 5 4 9 9 C 1.53624 * 108.53881 * 126.37170 * 8 7 5 10 10 C 1.53039 * 109.24500 * 54.85832 * 9 8 7 11 11 C 1.50695 * 109.46173 * 178.49133 * 10 9 8 12 12 H 1.07996 * 120.00581 * 120.06821 * 11 10 9 13 13 C 1.37883 * 119.99924 * 300.06714 * 11 10 9 14 14 N 1.31515 * 119.99919 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46874 * 90.00013 * 15 13 11 17 17 H 1.48497 * 109.47085 * 209.99903 * 15 13 11 18 18 H 1.48504 * 109.46900 * 330.00228 * 15 13 11 19 19 C 1.53040 * 109.53679 * 298.51071 * 10 9 8 20 20 C 1.46922 * 120.62922 * 176.58065 * 7 5 4 21 21 C 1.53006 * 117.49758 * 257.66027 * 4 2 1 22 22 C 1.53004 * 117.49675 * 189.03942 * 4 2 1 23 23 H 1.08995 * 109.46855 * 53.68196 * 1 2 3 24 24 H 1.08997 * 109.47053 * 293.68650 * 1 2 3 25 25 H 1.08999 * 109.46974 * 173.68275 * 1 2 3 26 26 H 1.08999 * 109.47913 * 63.94929 * 3 2 1 27 27 H 1.08996 * 109.47314 * 183.95557 * 3 2 1 28 28 H 1.09009 * 109.47160 * 303.95002 * 3 2 1 29 29 H 1.08995 * 109.58892 * 246.20284 * 8 7 5 30 30 H 1.08997 * 109.58368 * 6.63166 * 8 7 5 31 31 H 1.09005 * 109.63608 * 294.86888 * 9 8 7 32 32 H 1.09004 * 109.43086 * 174.73017 * 9 8 7 33 33 H 1.09005 * 109.45604 * 58.53070 * 10 9 8 34 34 H 0.97000 * 120.00143 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.49970 * 301.41325 * 19 10 9 36 36 H 1.08998 * 109.49730 * 181.31264 * 19 10 9 37 37 H 1.08999 * 109.59071 * 353.37406 * 20 7 5 38 38 H 1.09008 * 109.58687 * 113.79859 * 20 7 5 39 39 H 1.08999 * 117.50143 * 359.97438 * 21 4 2 40 40 H 1.09002 * 117.49573 * 145.02576 * 21 4 2 41 41 H 1.08996 * 117.49684 * 214.97612 * 22 4 2 42 42 H 1.08996 * 117.50137 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.3056 -2.0770 1.4135 6 8 0.9933 -2.3710 2.5479 7 7 1.0358 -2.9229 0.3995 8 6 1.3343 -2.5464 -0.9890 9 6 2.1998 -3.6485 -1.6186 10 6 1.4871 -4.9949 -1.4722 11 6 2.3147 -6.0742 -2.1211 12 1 2.6729 -6.9067 -1.5337 13 6 2.6146 -5.9990 -3.4648 14 7 2.1789 -4.9850 -4.1800 15 14 3.6399 -7.3373 -4.2693 16 1 2.7449 -8.4051 -4.7828 17 1 4.4153 -6.7573 -5.3952 18 1 4.5746 -7.9132 -3.2693 19 6 1.3021 -5.3173 0.0123 20 6 0.4317 -4.2364 0.6610 21 6 2.5194 0.0237 2.3390 22 6 3.4999 -0.6891 1.4054 23 1 -0.3633 0.6086 -0.8280 24 1 -0.3633 0.4128 0.9411 25 1 -0.3633 -1.0214 -0.1131 26 1 1.7044 1.8725 0.9232 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8525 29 1 0.4042 -2.4443 -1.5480 30 1 1.8770 -1.6012 -1.0027 31 1 3.1644 -3.6906 -1.1127 32 1 2.3521 -3.4305 -2.6757 33 1 0.5121 -4.9442 -1.9571 34 1 2.3902 -4.9319 -5.1252 35 1 2.2751 -5.3437 0.5029 36 1 0.8154 -6.2871 0.1161 37 1 0.3785 -4.4066 1.7363 38 1 -0.5706 -4.2693 0.2337 39 1 2.4739 1.1114 2.2850 40 1 2.3650 -0.4052 3.3291 41 1 3.9906 -1.5868 1.7814 42 1 4.0991 -0.0707 0.7372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597498734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = 8.312167 kcal Electronic energy + Delta-G solvation = -21780.544477 eV Core-core repulsion = 18761.919902 eV Total energy + Delta-G solvation = -3018.624575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50586 -37.97124 -36.67417 -33.93535 -33.29617 -31.21990 -29.95922 -27.80086 -26.33407 -25.01473 -23.26716 -22.53233 -22.21111 -21.29562 -19.32121 -17.99554 -17.35386 -16.29223 -15.82015 -15.62976 -14.62958 -14.50974 -14.39765 -14.31664 -13.73508 -13.02299 -12.94273 -12.72499 -12.63319 -12.53548 -12.16805 -11.99470 -11.68253 -11.50038 -11.29876 -11.16927 -10.94052 -10.84538 -10.63606 -10.53554 -10.28538 -10.01008 -9.61508 -9.36379 -9.12397 -8.87273 -8.34748 -8.14016 -7.92316 -5.98362 -4.04478 2.80530 3.30424 3.37365 3.39313 3.41044 3.51014 4.12507 4.44113 4.65685 4.72512 4.92602 5.03655 5.21613 5.31366 5.45537 5.46835 5.54005 5.65885 5.69397 5.80299 5.92933 5.93429 5.96191 6.06316 6.11468 6.18438 6.31145 6.52610 6.63715 6.74070 6.78369 6.89172 6.96198 7.11495 7.24987 7.40052 7.72564 7.98362 8.00869 8.11961 8.45795 8.56873 8.98760 9.60105 11.06816 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.005556 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.627980 B = 5038.791081 C = 5399.992602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.492 5.492 3 C 0.013 3.987 4 C 0.019 3.981 5 C 0.551 3.449 6 O -0.560 6.560 7 N -0.585 5.585 8 C 0.087 3.913 9 C -0.121 4.121 10 C 0.047 3.953 11 C -0.511 4.511 12 H 0.053 0.947 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.122 4.122 20 C 0.109 3.891 21 C -0.189 4.189 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 12.098 7.147 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.215 5.215 3 C -0.135 4.135 4 C -0.075 4.075 5 C 0.338 3.662 6 O -0.439 6.439 7 N -0.315 5.315 8 C -0.035 4.035 9 C -0.159 4.159 10 C 0.029 3.971 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.160 4.160 20 C -0.013 4.013 21 C -0.228 4.228 22 C -0.183 4.183 23 H 0.093 0.907 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.973 11.754 7.076 13.754 hybrid contribution 0.311 -0.376 0.014 0.489 sum -0.662 11.378 7.090 13.422 Atomic orbital electron populations 1.22568 0.86536 1.03655 1.00618 1.62165 1.08464 1.13224 1.37659 1.22617 1.01356 0.88601 1.00901 1.21752 0.97816 0.94828 0.93070 1.19120 0.78569 0.83958 0.84596 1.90640 1.54437 1.76756 1.22057 1.48204 1.59392 1.16029 1.07901 1.22671 1.00328 1.01507 0.78995 1.22059 0.96570 0.94761 1.02551 1.18655 0.96379 0.93155 0.88917 1.21207 1.32717 1.07155 0.93893 0.92842 1.24951 0.95960 0.95670 0.97343 1.69849 1.46011 1.29775 1.07298 0.86641 0.80422 0.82147 0.79058 1.20779 1.21272 1.20033 1.21997 0.98320 0.96109 0.99582 1.21735 0.96345 0.82427 1.00757 1.23525 1.03596 0.99372 0.96318 1.23149 0.90185 1.03226 1.01743 0.90655 0.95266 0.90322 0.94835 0.90817 0.90728 0.92724 0.86919 0.94563 0.87995 0.95640 0.93048 0.93057 0.92264 0.90605 0.92216 0.87863 0.87595 0.87909 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.63 60.07 0.52 0.69 16 2 N -0.49 -6.42 2.82 -236.75 -0.67 -7.09 16 3 C 0.01 0.13 8.53 60.06 0.51 0.64 16 4 C 0.02 0.27 1.77 -132.75 -0.24 0.04 16 5 C 0.55 10.01 6.05 -10.99 -0.07 9.94 16 6 O -0.56 -11.53 15.75 5.56 0.09 -11.45 16 7 N -0.58 -10.86 2.50 -172.50 -0.43 -11.29 16 8 C 0.09 1.62 4.65 -3.48 -0.02 1.61 16 9 C -0.12 -2.74 5.17 -26.39 -0.14 -2.87 16 10 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 11 C -0.51 -13.79 8.56 -34.44 -0.29 -14.08 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -24.63 11.30 55.43 0.63 -24.01 16 15 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 20 C 0.11 2.06 6.42 -3.71 -0.02 2.04 16 21 C -0.19 -2.35 9.23 -26.73 -0.25 -2.60 16 22 C -0.15 -1.87 9.64 -26.73 -0.26 -2.12 16 23 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 1.14 5.43 -51.93 -0.28 0.86 16 26 H 0.03 0.31 6.37 -51.93 -0.33 -0.02 16 27 H 0.07 0.68 6.49 -51.93 -0.34 0.34 16 28 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16 29 H 0.05 1.03 7.79 -51.93 -0.40 0.62 16 30 H 0.11 1.98 4.67 -51.93 -0.24 1.73 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 38 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.10 1.06 5.94 -51.93 -0.31 0.75 16 40 H 0.11 1.45 7.72 -51.93 -0.40 1.05 16 41 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.11 1.17 6.75 -51.93 -0.35 0.82 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -29.26 317.98 -7.96 -37.22 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.68 Total: 2.71 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.67 Total: -6.88 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.47 Total: -42.39 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.26 -7.96 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597498734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.531 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds