Wall clock time and date at job start Mon Mar 30 2020 01:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99879 * 2 1 4 4 C 1.46898 * 110.99760 * 123.94905 * 2 1 3 5 5 C 1.50701 * 115.55244 * 43.36683 * 4 2 1 6 6 O 1.21277 * 119.99872 * 225.99143 * 5 4 2 7 7 N 1.34775 * 119.99665 * 45.99096 * 5 4 2 8 8 C 1.46929 * 120.63151 * 356.29553 * 7 5 4 9 9 C 1.53624 * 108.53881 * 126.37170 * 8 7 5 10 10 C 1.53039 * 109.24500 * 54.85832 * 9 8 7 11 11 C 1.50695 * 109.46173 * 178.49133 * 10 9 8 12 12 H 1.07996 * 120.00581 * 120.06821 * 11 10 9 13 13 C 1.37883 * 119.99924 * 300.06714 * 11 10 9 14 14 N 1.31515 * 119.99919 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46874 * 90.00013 * 15 13 11 17 17 H 1.48497 * 109.47085 * 209.99903 * 15 13 11 18 18 H 1.48504 * 109.46900 * 330.00228 * 15 13 11 19 19 C 1.53040 * 109.53679 * 298.51071 * 10 9 8 20 20 C 1.46922 * 120.62922 * 176.58065 * 7 5 4 21 21 C 1.53006 * 117.49758 * 257.66027 * 4 2 1 22 22 C 1.53004 * 117.49675 * 189.03942 * 4 2 1 23 23 H 1.08995 * 109.46855 * 53.68196 * 1 2 3 24 24 H 1.08997 * 109.47053 * 293.68650 * 1 2 3 25 25 H 1.08999 * 109.46974 * 173.68275 * 1 2 3 26 26 H 1.08999 * 109.47913 * 63.94929 * 3 2 1 27 27 H 1.08996 * 109.47314 * 183.95557 * 3 2 1 28 28 H 1.09009 * 109.47160 * 303.95002 * 3 2 1 29 29 H 1.08995 * 109.58892 * 246.20284 * 8 7 5 30 30 H 1.08997 * 109.58368 * 6.63166 * 8 7 5 31 31 H 1.09005 * 109.63608 * 294.86888 * 9 8 7 32 32 H 1.09004 * 109.43086 * 174.73017 * 9 8 7 33 33 H 1.09005 * 109.45604 * 58.53070 * 10 9 8 34 34 H 0.97000 * 120.00143 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.49970 * 301.41325 * 19 10 9 36 36 H 1.08998 * 109.49730 * 181.31264 * 19 10 9 37 37 H 1.08999 * 109.59071 * 353.37406 * 20 7 5 38 38 H 1.09008 * 109.58687 * 113.79859 * 20 7 5 39 39 H 1.08999 * 117.50143 * 359.97438 * 21 4 2 40 40 H 1.09002 * 117.49573 * 145.02576 * 21 4 2 41 41 H 1.08996 * 117.49684 * 214.97612 * 22 4 2 42 42 H 1.08996 * 117.50137 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.3056 -2.0770 1.4135 6 8 0.9933 -2.3710 2.5479 7 7 1.0358 -2.9229 0.3995 8 6 1.3343 -2.5464 -0.9890 9 6 2.1998 -3.6485 -1.6186 10 6 1.4871 -4.9949 -1.4722 11 6 2.3147 -6.0742 -2.1211 12 1 2.6729 -6.9067 -1.5337 13 6 2.6146 -5.9990 -3.4648 14 7 2.1789 -4.9850 -4.1800 15 14 3.6399 -7.3373 -4.2693 16 1 2.7449 -8.4051 -4.7828 17 1 4.4153 -6.7573 -5.3952 18 1 4.5746 -7.9132 -3.2693 19 6 1.3021 -5.3173 0.0123 20 6 0.4317 -4.2364 0.6610 21 6 2.5194 0.0237 2.3390 22 6 3.4999 -0.6891 1.4054 23 1 -0.3633 0.6086 -0.8280 24 1 -0.3633 0.4128 0.9411 25 1 -0.3633 -1.0214 -0.1131 26 1 1.7044 1.8725 0.9232 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8525 29 1 0.4042 -2.4443 -1.5480 30 1 1.8770 -1.6012 -1.0027 31 1 3.1644 -3.6906 -1.1127 32 1 2.3521 -3.4305 -2.6757 33 1 0.5121 -4.9442 -1.9571 34 1 2.3902 -4.9319 -5.1252 35 1 2.2751 -5.3437 0.5029 36 1 0.8154 -6.2871 0.1161 37 1 0.3785 -4.4066 1.7363 38 1 -0.5706 -4.2693 0.2337 39 1 2.4739 1.1114 2.2850 40 1 2.3650 -0.4052 3.3291 41 1 3.9906 -1.5868 1.7814 42 1 4.0991 -0.0707 0.7372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597498734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:32 Heat of formation + Delta-G solvation = -8.236555 kcal Electronic energy + Delta-G solvation = -21781.262083 eV Core-core repulsion = 18761.919902 eV Total energy + Delta-G solvation = -3019.342181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79978 -39.29033 -38.23947 -35.42818 -34.68015 -33.02766 -31.66280 -28.81987 -28.00783 -26.26358 -24.79826 -23.88273 -23.51163 -22.72744 -20.92917 -19.41553 -18.66238 -18.21969 -17.20778 -16.88500 -16.46265 -15.85235 -15.68527 -15.48745 -14.83622 -14.75355 -14.52010 -14.42961 -14.01809 -13.91442 -13.37146 -13.22894 -13.00294 -12.94257 -12.78757 -12.51738 -12.42810 -12.25897 -12.08911 -12.06940 -11.77481 -11.63708 -11.43442 -10.99737 -10.95986 -10.63142 -10.37102 -9.53821 -9.15554 -8.05029 -6.18650 1.41977 1.43129 1.44366 1.53280 2.01294 2.45649 2.51787 3.04655 3.21116 3.43014 3.63340 3.91212 4.14587 4.20422 4.32045 4.35490 4.40192 4.54206 4.55921 4.59442 4.60999 4.65012 4.76887 4.81689 4.84454 4.97230 4.98566 5.10945 5.13942 5.17178 5.20241 5.28106 5.47573 5.58874 5.67664 5.84390 5.96960 6.01427 6.17397 6.41878 6.51838 6.90701 7.11444 7.48657 8.98240 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.005556 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.627980 B = 5038.791081 C = 5399.992602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.502 5.502 3 C 0.011 3.989 4 C -0.001 4.001 5 C 0.549 3.451 6 O -0.588 6.588 7 N -0.589 5.589 8 C 0.106 3.894 9 C -0.110 4.110 10 C 0.045 3.955 11 C -0.535 4.535 12 H 0.046 0.954 13 C 0.018 3.982 14 N -0.910 5.910 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.274 1.274 19 C -0.112 4.112 20 C 0.114 3.886 21 C -0.171 4.171 22 C -0.139 4.139 23 H 0.096 0.904 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.000 1.000 34 H 0.261 0.739 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 13.640 7.190 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.226 5.226 3 C -0.136 4.136 4 C -0.094 4.094 5 C 0.337 3.663 6 O -0.469 6.469 7 N -0.319 5.319 8 C -0.015 4.015 9 C -0.149 4.149 10 C 0.027 3.973 11 C -0.574 4.574 12 H 0.064 0.936 13 C -0.181 4.181 14 N -0.550 5.550 15 Si 0.775 3.225 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.150 4.150 20 C -0.009 4.009 21 C -0.210 4.210 22 C -0.177 4.177 23 H 0.115 0.885 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.391 13.307 7.123 15.098 hybrid contribution 0.112 -0.864 0.016 0.872 sum -0.280 12.442 7.139 14.347 Atomic orbital electron populations 1.22547 0.86567 1.02537 1.01545 1.62113 1.08570 1.15095 1.36784 1.22730 1.01930 0.86754 1.02145 1.21683 0.98711 0.93827 0.95207 1.19723 0.77813 0.84962 0.83808 1.90617 1.55533 1.77727 1.23045 1.48214 1.59602 1.16062 1.07994 1.22456 0.99661 1.00615 0.78815 1.21835 0.96550 0.95385 1.01140 1.18617 0.94733 0.93521 0.90439 1.21531 1.33441 1.07844 0.94543 0.93572 1.25636 0.96964 0.97641 0.97849 1.69963 1.46612 1.30929 1.07479 0.85702 0.78985 0.79695 0.78111 1.20330 1.20691 1.19845 1.21839 0.98335 0.97295 0.97517 1.21633 0.96342 0.82210 1.00669 1.23565 1.01996 1.00666 0.94783 1.23253 0.89285 1.03188 1.01992 0.88546 0.95198 0.92760 0.93701 0.89875 0.89282 0.92801 0.85106 0.95788 0.90523 0.98143 0.92936 0.94056 0.91767 0.90308 0.91253 0.85018 0.89053 0.89186 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.63 127.69 1.10 1.47 16 2 N -0.50 -11.85 2.82 -902.94 -2.55 -14.40 16 3 C 0.01 0.18 8.53 127.69 1.09 1.27 16 4 C 0.00 -0.03 1.77 2.79 0.00 -0.02 16 5 C 0.55 19.58 6.05 87.66 0.53 20.11 16 6 O -0.59 -24.10 15.75 -3.02 -0.05 -24.14 16 7 N -0.59 -21.74 2.50 -818.07 -2.05 -23.79 16 8 C 0.11 3.96 4.65 86.51 0.40 4.36 16 9 C -0.11 -5.08 5.17 30.82 0.16 -4.92 16 10 C 0.05 2.25 2.06 -11.51 -0.02 2.22 16 11 C -0.54 -29.37 8.56 25.60 0.22 -29.15 16 12 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 13 C 0.02 0.99 5.30 84.66 0.45 1.44 16 14 N -0.91 -50.89 11.30 21.45 0.24 -50.65 16 15 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C -0.11 -4.74 5.30 30.67 0.16 -4.58 16 20 C 0.11 4.30 6.42 86.36 0.55 4.86 16 21 C -0.17 -3.84 9.23 30.60 0.28 -3.55 16 22 C -0.14 -3.27 9.64 30.60 0.29 -2.98 16 23 H 0.10 1.80 8.08 -2.39 -0.02 1.78 16 24 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 1.52 5.43 -2.39 -0.01 1.51 16 26 H 0.04 0.63 6.37 -2.39 -0.02 0.62 16 27 H 0.08 1.19 6.49 -2.39 -0.02 1.18 16 28 H 0.09 1.20 8.09 -2.38 -0.02 1.18 16 29 H 0.05 2.02 7.79 -2.39 -0.02 2.00 16 30 H 0.13 4.44 4.67 -2.39 -0.01 4.43 16 31 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 33 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.95 7.02 -2.39 -0.02 2.93 16 38 H 0.07 2.47 8.14 -2.38 -0.02 2.46 16 39 H 0.13 2.19 5.94 -2.39 -0.01 2.17 16 40 H 0.09 2.36 7.72 -2.39 -0.02 2.34 16 41 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.13 2.42 6.75 -2.39 -0.02 2.41 16 Total: -1.00 -63.08 317.98 3.85 -59.23 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.00 Total: 18.01 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.23 Total: -9.48 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -4.35 Total: -88.84 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.08 3.85 -59.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597498734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.992 kcal (2) G-P(sol) polarization free energy of solvation -63.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds