Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46903 * 111.00235 * 2 1 4 4 C 1.46900 * 111.00278 * 123.95234 * 2 1 3 5 5 C 1.50690 * 115.55352 * 304.96078 * 4 2 1 6 6 O 1.21285 * 120.00453 * 89.88444 * 5 4 2 7 7 N 1.34777 * 119.99896 * 269.88693 * 5 4 2 8 8 C 1.46927 * 120.63254 * 5.69974 * 7 5 4 9 9 C 1.53190 * 108.77917 * 126.41226 * 8 7 5 10 10 C 1.53040 * 109.31157 * 54.63593 * 9 8 7 11 11 C 1.53036 * 109.53709 * 298.63495 * 10 9 8 12 12 H 1.09007 * 109.50318 * 301.41181 * 11 10 9 13 13 C 1.50701 * 109.49766 * 181.35045 * 11 10 9 14 14 H 1.07999 * 119.99945 * 272.87854 * 13 11 10 15 15 C 1.37875 * 120.00140 * 92.87591 * 13 11 10 16 16 N 1.31514 * 120.00237 * 186.08538 * 15 13 11 17 17 Si 1.86799 * 120.00158 * 6.08578 * 15 13 11 18 18 H 1.48502 * 109.47078 * 88.37185 * 17 15 13 19 19 H 1.48496 * 109.47536 * 208.37353 * 17 15 13 20 20 H 1.48504 * 109.47114 * 328.37517 * 17 15 13 21 21 C 1.46925 * 120.63283 * 185.71847 * 7 5 4 22 22 C 1.53001 * 117.51413 * 90.65648 * 4 2 1 23 23 C 1.52996 * 59.99906 * 107.48238 * 22 4 2 24 24 H 1.08998 * 109.47117 * 303.75980 * 1 2 3 25 25 H 1.08999 * 109.47564 * 63.76372 * 1 2 3 26 26 H 1.09006 * 109.47268 * 183.76233 * 1 2 3 27 27 H 1.08991 * 109.47958 * 191.76473 * 3 2 1 28 28 H 1.09006 * 109.46749 * 311.77158 * 3 2 1 29 29 H 1.09004 * 109.46773 * 71.76436 * 3 2 1 30 30 H 1.09007 * 109.58307 * 6.62539 * 8 7 5 31 31 H 1.08998 * 109.58590 * 246.20612 * 8 7 5 32 32 H 1.09007 * 109.49606 * 294.68718 * 9 8 7 33 33 H 1.08995 * 109.49924 * 174.59189 * 9 8 7 34 34 H 1.08989 * 109.45845 * 58.65831 * 10 9 8 35 35 H 1.09003 * 109.45551 * 178.62948 * 10 9 8 36 36 H 0.96997 * 120.00023 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.58703 * 113.79867 * 21 7 5 38 38 H 1.08999 * 109.70229 * 353.44800 * 21 7 5 39 39 H 1.09002 * 117.50038 * 214.97300 * 22 4 2 40 40 H 1.09004 * 117.50212 * 359.97438 * 22 4 2 41 41 H 1.09003 * 117.49758 * 252.50462 * 23 22 4 42 42 H 1.09005 * 117.49889 * 107.48971 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5011 -0.3366 2.4948 6 8 0.4974 -0.8338 2.9600 7 7 2.1744 0.6001 3.1919 8 6 3.3183 1.3010 2.5927 9 6 3.0860 2.8109 2.7063 10 6 2.8228 3.1738 4.1696 11 6 1.5637 2.4533 4.6571 12 1 0.7166 2.7388 4.0334 13 6 1.2867 2.8371 6.0879 14 1 1.7487 2.2863 6.8938 15 6 0.4436 3.8914 6.3680 16 7 0.2949 4.3031 7.6082 17 14 -0.4877 4.7353 4.9859 18 1 -1.7804 4.0394 4.7630 19 1 -0.7446 6.1508 5.3542 20 1 0.3217 4.6866 3.7418 21 6 1.7788 0.9394 4.5656 22 6 2.2633 -2.2569 0.9225 23 6 3.4336 -1.2784 1.0391 24 1 -0.3633 0.5711 0.8544 25 1 -0.3634 0.4543 -0.9218 26 1 -0.3634 -1.0255 0.0674 27 1 3.0648 1.3502 -0.2095 28 1 1.4865 1.9560 -0.7665 29 1 1.8254 1.8258 0.9761 30 1 3.4078 1.0231 1.5425 31 1 4.2312 1.0307 3.1234 32 1 2.2245 3.0930 2.1009 33 1 3.9694 3.3425 2.3528 34 1 3.6742 2.8690 4.7780 35 1 2.6813 4.2511 4.2567 36 1 -0.2985 5.0446 7.8052 37 1 2.5661 0.6397 5.2572 38 1 0.8532 0.4228 4.8196 39 1 2.0820 -2.9272 1.7627 40 1 2.0484 -2.6698 -0.0631 41 1 3.9891 -1.0476 0.1301 42 1 4.0224 -1.3049 1.9561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597896784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = 4.421838 kcal Electronic energy + Delta-G solvation = -22055.186937 eV Core-core repulsion = 19036.393665 eV Total energy + Delta-G solvation = -3018.793272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62220 -37.72954 -36.80130 -34.40720 -33.39044 -31.78624 -30.72910 -27.64855 -25.93750 -25.18590 -24.13214 -22.52532 -22.13599 -21.67997 -19.29501 -18.40646 -17.19035 -16.81055 -16.03465 -15.75429 -14.77367 -14.56529 -14.30385 -14.18686 -13.98102 -13.72685 -13.45402 -12.89702 -12.64088 -12.56194 -12.40109 -12.14441 -11.88634 -11.70419 -11.59305 -11.31859 -11.10498 -10.87812 -10.68051 -10.43437 -10.27754 -10.05998 -9.93538 -9.67037 -9.58730 -9.11415 -8.58721 -8.38843 -8.10021 -6.14453 -4.14148 2.78405 3.22841 3.25972 3.33113 3.34470 3.59279 3.71268 4.36711 4.54193 4.76693 4.98548 5.01511 5.10892 5.18555 5.32330 5.37771 5.38997 5.48043 5.50895 5.58553 5.69222 5.75692 5.81096 5.88649 5.95531 5.97941 6.03199 6.11400 6.18858 6.37055 6.53133 6.65369 6.75220 6.81124 6.85343 6.87914 7.21056 7.35743 7.69152 7.80390 8.41980 8.48238 8.90084 9.48641 10.98517 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.006394 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.371976 B = 4378.362252 C = 4472.401421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.493 5.493 3 C -0.001 4.001 4 C 0.003 3.997 5 C 0.521 3.479 6 O -0.539 6.539 7 N -0.600 5.600 8 C 0.096 3.904 9 C -0.142 4.142 10 C -0.111 4.111 11 C 0.007 3.993 12 H 0.033 0.967 13 C -0.513 4.513 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.121 3.879 22 C -0.130 4.130 23 C -0.155 4.155 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.265 0.735 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 -7.228 -16.353 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.217 5.217 3 C -0.148 4.148 4 C -0.091 4.091 5 C 0.305 3.695 6 O -0.415 6.415 7 N -0.333 5.333 8 C -0.027 4.027 9 C -0.180 4.180 10 C -0.149 4.149 11 C -0.013 4.013 12 H 0.051 0.949 13 C -0.551 4.551 14 H 0.093 0.907 15 C -0.127 4.127 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C 0.000 4.000 22 C -0.168 4.168 23 C -0.193 4.193 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.637 -7.571 -16.393 19.238 hybrid contribution -0.828 1.161 0.126 1.432 sum 5.809 -6.410 -16.267 18.424 Atomic orbital electron populations 1.22390 0.86294 1.02808 1.00937 1.62157 1.08790 1.13976 1.36776 1.22952 1.00844 0.88769 1.02236 1.21617 1.00878 0.98194 0.88416 1.20262 0.83708 0.79685 0.85796 1.90676 1.24622 1.55884 1.70327 1.48446 1.31259 1.37437 1.16143 1.22076 0.88602 0.92913 0.99074 1.22139 1.01118 0.94581 1.00156 1.21841 1.00252 1.00787 0.92062 1.19458 0.93848 0.90321 0.97675 0.94919 1.20855 1.28398 1.15711 0.90178 0.90699 1.25015 0.96176 0.96297 0.95243 1.69901 1.37647 1.27283 1.18524 0.86883 0.80896 0.78736 0.83207 1.20253 1.21476 1.18945 1.21989 1.00665 0.98497 0.78871 1.23031 1.00145 0.89856 1.03788 1.23208 0.89754 1.02449 1.03885 0.94844 0.91132 0.90855 0.90800 0.91180 0.92954 0.89330 0.91741 0.92192 0.91692 0.92548 0.92573 0.92558 0.92099 0.89710 0.88223 0.87427 0.87447 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.05 60.06 0.54 0.86 16 2 N -0.49 -6.33 5.09 -236.77 -1.21 -7.54 16 3 C 0.00 -0.01 8.17 60.07 0.49 0.48 16 4 C 0.00 0.04 0.80 -132.76 -0.11 -0.07 16 5 C 0.52 9.27 5.48 -10.99 -0.06 9.21 16 6 O -0.54 -11.65 16.29 5.55 0.09 -11.56 16 7 N -0.60 -10.56 2.86 -172.77 -0.49 -11.06 16 8 C 0.10 1.35 4.52 -3.71 -0.02 1.34 16 9 C -0.14 -2.18 5.73 -26.61 -0.15 -2.33 16 10 C -0.11 -2.19 5.15 -26.69 -0.14 -2.32 16 11 C 0.01 0.15 1.85 -91.65 -0.17 -0.02 16 12 H 0.03 0.80 5.30 -51.92 -0.27 0.52 16 13 C -0.51 -14.06 8.86 -34.44 -0.31 -14.37 16 14 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 17 Si 0.88 21.64 27.06 -169.99 -4.60 17.04 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.26 -6.21 6.66 56.52 0.38 -5.84 16 21 C 0.12 2.52 5.70 -3.71 -0.02 2.50 16 22 C -0.13 -1.50 10.16 -26.73 -0.27 -1.77 16 23 C -0.16 -1.63 8.22 -26.74 -0.22 -1.85 16 24 H 0.03 0.53 7.54 -51.93 -0.39 0.14 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 27 H 0.07 0.73 7.24 -51.93 -0.38 0.36 16 28 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 29 H 0.05 0.73 3.43 -51.93 -0.18 0.55 16 30 H 0.09 1.06 2.62 -51.92 -0.14 0.92 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.97 6.41 -51.92 -0.33 0.63 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.08 8.14 -51.94 -0.42 0.66 16 35 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.96 7.01 -51.93 -0.36 1.60 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -31.54 318.52 -7.85 -39.39 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.69 Total: 1.53 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.52 Total: -6.29 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.93 Total: -44.90 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.60 Total: 17.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.54 -7.85 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597896784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.809 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds