Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46903 * 111.00235 * 2 1 4 4 C 1.46900 * 111.00278 * 123.95234 * 2 1 3 5 5 C 1.50690 * 115.55352 * 304.96078 * 4 2 1 6 6 O 1.21285 * 120.00453 * 89.88444 * 5 4 2 7 7 N 1.34777 * 119.99896 * 269.88693 * 5 4 2 8 8 C 1.46927 * 120.63254 * 5.69974 * 7 5 4 9 9 C 1.53190 * 108.77917 * 126.41226 * 8 7 5 10 10 C 1.53040 * 109.31157 * 54.63593 * 9 8 7 11 11 C 1.53036 * 109.53709 * 298.63495 * 10 9 8 12 12 H 1.09007 * 109.50318 * 301.41181 * 11 10 9 13 13 C 1.50701 * 109.49766 * 181.35045 * 11 10 9 14 14 H 1.07999 * 119.99945 * 272.87854 * 13 11 10 15 15 C 1.37875 * 120.00140 * 92.87591 * 13 11 10 16 16 N 1.31514 * 120.00237 * 186.08538 * 15 13 11 17 17 Si 1.86799 * 120.00158 * 6.08578 * 15 13 11 18 18 H 1.48502 * 109.47078 * 88.37185 * 17 15 13 19 19 H 1.48496 * 109.47536 * 208.37353 * 17 15 13 20 20 H 1.48504 * 109.47114 * 328.37517 * 17 15 13 21 21 C 1.46925 * 120.63283 * 185.71847 * 7 5 4 22 22 C 1.53001 * 117.51413 * 90.65648 * 4 2 1 23 23 C 1.52996 * 59.99906 * 107.48238 * 22 4 2 24 24 H 1.08998 * 109.47117 * 303.75980 * 1 2 3 25 25 H 1.08999 * 109.47564 * 63.76372 * 1 2 3 26 26 H 1.09006 * 109.47268 * 183.76233 * 1 2 3 27 27 H 1.08991 * 109.47958 * 191.76473 * 3 2 1 28 28 H 1.09006 * 109.46749 * 311.77158 * 3 2 1 29 29 H 1.09004 * 109.46773 * 71.76436 * 3 2 1 30 30 H 1.09007 * 109.58307 * 6.62539 * 8 7 5 31 31 H 1.08998 * 109.58590 * 246.20612 * 8 7 5 32 32 H 1.09007 * 109.49606 * 294.68718 * 9 8 7 33 33 H 1.08995 * 109.49924 * 174.59189 * 9 8 7 34 34 H 1.08989 * 109.45845 * 58.65831 * 10 9 8 35 35 H 1.09003 * 109.45551 * 178.62948 * 10 9 8 36 36 H 0.96997 * 120.00023 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.58703 * 113.79867 * 21 7 5 38 38 H 1.08999 * 109.70229 * 353.44800 * 21 7 5 39 39 H 1.09002 * 117.50038 * 214.97300 * 22 4 2 40 40 H 1.09004 * 117.50212 * 359.97438 * 22 4 2 41 41 H 1.09003 * 117.49758 * 252.50462 * 23 22 4 42 42 H 1.09005 * 117.49889 * 107.48971 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.5011 -0.3366 2.4948 6 8 0.4974 -0.8338 2.9600 7 7 2.1744 0.6001 3.1919 8 6 3.3183 1.3010 2.5927 9 6 3.0860 2.8109 2.7063 10 6 2.8228 3.1738 4.1696 11 6 1.5637 2.4533 4.6571 12 1 0.7166 2.7388 4.0334 13 6 1.2867 2.8371 6.0879 14 1 1.7487 2.2863 6.8938 15 6 0.4436 3.8914 6.3680 16 7 0.2949 4.3031 7.6082 17 14 -0.4877 4.7353 4.9859 18 1 -1.7804 4.0394 4.7630 19 1 -0.7446 6.1508 5.3542 20 1 0.3217 4.6866 3.7418 21 6 1.7788 0.9394 4.5656 22 6 2.2633 -2.2569 0.9225 23 6 3.4336 -1.2784 1.0391 24 1 -0.3633 0.5711 0.8544 25 1 -0.3634 0.4543 -0.9218 26 1 -0.3634 -1.0255 0.0674 27 1 3.0648 1.3502 -0.2095 28 1 1.4865 1.9560 -0.7665 29 1 1.8254 1.8258 0.9761 30 1 3.4078 1.0231 1.5425 31 1 4.2312 1.0307 3.1234 32 1 2.2245 3.0930 2.1009 33 1 3.9694 3.3425 2.3528 34 1 3.6742 2.8690 4.7780 35 1 2.6813 4.2511 4.2567 36 1 -0.2985 5.0446 7.8052 37 1 2.5661 0.6397 5.2572 38 1 0.8532 0.4228 4.8196 39 1 2.0820 -2.9272 1.7627 40 1 2.0484 -2.6698 -0.0631 41 1 3.9891 -1.0476 0.1301 42 1 4.0224 -1.3049 1.9561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597896784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -18.157392 kcal Electronic energy + Delta-G solvation = -22056.166046 eV Core-core repulsion = 19036.393665 eV Total energy + Delta-G solvation = -3019.772381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87630 -39.03476 -38.19926 -35.35572 -35.27316 -33.48605 -32.36317 -28.66993 -27.55831 -26.76057 -25.22117 -23.58082 -23.45969 -23.02748 -20.89499 -19.77172 -18.95460 -18.20043 -17.31082 -17.03917 -16.45224 -15.78733 -15.66580 -15.50396 -15.19834 -14.98581 -14.84718 -14.65011 -14.16367 -14.04011 -13.88696 -13.19325 -13.11054 -13.01933 -12.87540 -12.73290 -12.45190 -12.30444 -11.97458 -11.88141 -11.79645 -11.61435 -11.43399 -11.27541 -11.10943 -10.77444 -10.73994 -9.65247 -9.45766 -8.36552 -6.39219 1.24378 1.27753 1.37049 1.44793 1.94181 2.26482 2.63031 2.74657 2.99891 3.39068 3.87884 3.96969 4.00120 4.08158 4.13050 4.17067 4.29933 4.35705 4.47187 4.54286 4.60202 4.63153 4.70775 4.72033 4.74407 4.85819 4.91048 4.92394 4.97335 5.00771 5.11366 5.19843 5.23669 5.36914 5.46993 5.62371 5.71852 5.79965 5.87600 6.22031 6.44872 6.66715 7.09478 7.25985 8.80211 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.006394 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.371976 B = 4378.362252 C = 4472.401421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.480 5.480 3 C -0.006 4.006 4 C -0.019 4.019 5 C 0.515 3.485 6 O -0.590 6.590 7 N -0.601 5.601 8 C 0.095 3.905 9 C -0.134 4.134 10 C -0.108 4.108 11 C 0.008 3.992 12 H 0.018 0.982 13 C -0.515 4.515 14 H 0.038 0.962 15 C 0.018 3.982 16 N -0.944 5.944 17 Si 0.935 3.065 18 H -0.283 1.283 19 H -0.281 1.281 20 H -0.243 1.243 21 C 0.131 3.869 22 C -0.129 4.129 23 C -0.126 4.126 24 H -0.003 1.003 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.029 0.971 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.266 0.734 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -7.207 -20.294 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.203 5.203 3 C -0.153 4.153 4 C -0.113 4.113 5 C 0.302 3.698 6 O -0.470 6.470 7 N -0.332 5.332 8 C -0.026 4.026 9 C -0.172 4.172 10 C -0.147 4.147 11 C -0.011 4.011 12 H 0.036 0.964 13 C -0.554 4.554 14 H 0.056 0.944 15 C -0.180 4.180 16 N -0.584 5.584 17 Si 0.760 3.240 18 H -0.209 1.209 19 H -0.206 1.206 20 H -0.166 1.166 21 C 0.008 3.992 22 C -0.167 4.167 23 C -0.163 4.163 24 H 0.016 0.984 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.954 -7.546 -20.371 23.497 hybrid contribution -1.527 1.070 1.427 2.348 sum 7.427 -6.476 -18.945 21.354 Atomic orbital electron populations 1.22390 0.87160 1.02103 1.00562 1.62296 1.07999 1.14662 1.35362 1.23085 1.02766 0.87978 1.01465 1.21592 1.03908 0.99828 0.85930 1.21170 0.82781 0.78727 0.87118 1.90644 1.26941 1.57509 1.71866 1.48485 1.32251 1.37826 1.14668 1.22373 0.87705 0.91672 1.00862 1.22097 1.02836 0.95837 0.96395 1.21675 0.98105 0.99347 0.95525 1.19393 0.95237 0.92029 0.94484 0.96419 1.21160 1.27523 1.14825 0.91883 0.94417 1.25807 0.97288 0.97361 0.97510 1.70034 1.39129 1.28478 1.20723 0.85916 0.79299 0.77714 0.81080 1.20883 1.20637 1.16604 1.21514 0.99332 0.96765 0.81602 1.23137 1.00631 0.88632 1.04318 1.23389 0.88123 0.99360 1.05446 0.98442 0.88639 0.91414 0.87964 0.89833 0.95207 0.86338 0.89669 0.92700 0.87542 0.92216 0.93879 0.92447 0.91853 0.93180 0.89425 0.85615 0.84413 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.05 127.69 1.16 1.81 16 2 N -0.48 -10.74 5.09 -902.99 -4.60 -15.33 16 3 C -0.01 -0.11 8.17 127.69 1.04 0.93 16 4 C -0.02 -0.46 0.80 2.78 0.00 -0.46 16 5 C 0.52 18.06 5.48 87.65 0.48 18.54 16 6 O -0.59 -26.41 16.29 -3.04 -0.05 -26.46 16 7 N -0.60 -20.50 2.86 -818.91 -2.34 -22.84 16 8 C 0.09 2.31 4.52 86.36 0.39 2.70 16 9 C -0.13 -3.61 5.73 30.67 0.18 -3.43 16 10 C -0.11 -4.10 5.15 30.62 0.16 -3.94 16 11 C 0.01 0.38 1.85 -11.46 -0.02 0.36 16 12 H 0.02 0.87 5.30 -2.38 -0.01 0.86 16 13 C -0.52 -29.45 8.86 25.60 0.23 -29.23 16 14 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 15 C 0.02 1.06 5.47 84.65 0.46 1.52 16 16 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 17 Si 0.94 45.48 27.06 68.60 1.86 47.34 16 18 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 20 H -0.24 -10.81 6.66 99.48 0.66 -10.15 16 21 C 0.13 5.61 5.70 86.36 0.49 6.10 16 22 C -0.13 -2.60 10.16 30.59 0.31 -2.29 16 23 C -0.13 -2.05 8.22 30.59 0.25 -1.80 16 24 H 0.00 -0.10 7.54 -2.39 -0.02 -0.12 16 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.75 8.11 -2.38 -0.02 1.73 16 27 H 0.10 1.39 7.24 -2.39 -0.02 1.37 16 28 H 0.08 1.40 8.06 -2.38 -0.02 1.38 16 29 H 0.03 0.73 3.43 -2.38 -0.01 0.72 16 30 H 0.12 2.22 2.62 -2.38 -0.01 2.21 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.58 6.41 -2.38 -0.02 1.56 16 33 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 2.47 7.01 -2.39 -0.02 2.45 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.11 1.68 7.93 -2.38 -0.02 1.66 16 Total: -1.00 -73.81 318.52 1.25 -72.56 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.96 Total: 12.90 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.13 Total: -9.18 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -6.64 Total: -97.16 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.86 Total: 47.34 kcal Total: -73.81 1.25 -72.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597896784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.406 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds