Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 120.00045 * 2 1 4 4 C 1.50703 * 109.47067 * 89.99754 * 3 2 1 5 5 H 1.08000 * 119.99952 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99965 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00399 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46887 * 60.00106 * 8 6 4 10 10 H 1.48501 * 109.47210 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47096 * 300.00550 * 8 6 4 12 12 C 1.34777 * 119.99996 * 180.27116 * 2 1 3 13 13 O 1.21287 * 119.99925 * 179.72991 * 12 2 1 14 14 C 1.50697 * 120.00096 * 359.72949 * 12 2 1 15 15 C 1.52999 * 109.47226 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.47136 * 177.04562 * 15 14 12 17 17 C 1.46899 * 111.00276 * 164.00288 * 16 15 14 18 18 C 1.53003 * 117.49508 * 10.00693 * 17 16 15 19 19 C 1.52998 * 60.00003 * 252.51020 * 18 17 16 20 20 C 1.46909 * 111.00085 * 287.95963 * 16 15 14 21 21 C 1.52998 * 117.49751 * 248.73981 * 20 16 15 22 22 C 1.52996 * 117.49897 * 180.11843 * 20 16 15 23 23 H 1.09007 * 109.46960 * 89.99915 * 1 2 3 24 24 H 1.08997 * 109.47407 * 210.00257 * 1 2 3 25 25 H 1.09000 * 109.47096 * 330.00493 * 1 2 3 26 26 H 1.09002 * 109.46996 * 209.99667 * 3 2 1 27 27 H 1.08995 * 109.47233 * 329.99773 * 3 2 1 28 28 H 0.96997 * 119.99928 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46756 * 299.99784 * 14 12 2 30 30 H 1.08998 * 109.47396 * 59.99461 * 14 12 2 31 31 H 1.08991 * 109.47346 * 297.04495 * 15 14 12 32 32 H 1.08996 * 109.47007 * 57.04905 * 15 14 12 33 33 H 1.08999 * 115.55084 * 155.70884 * 17 16 15 34 34 H 1.08999 * 117.49855 * 359.97438 * 18 17 16 35 35 H 1.09000 * 117.49666 * 145.01973 * 18 17 16 36 36 H 1.09001 * 117.49755 * 252.51514 * 19 18 17 37 37 H 1.08998 * 117.50042 * 107.48899 * 19 18 17 38 38 H 1.08994 * 115.54623 * 34.44410 * 20 16 15 39 39 H 1.09005 * 117.49681 * 359.97438 * 21 20 16 40 40 H 1.08994 * 117.49983 * 145.02056 * 21 20 16 41 41 H 1.09004 * 117.49652 * 214.97964 * 22 20 16 42 42 H 1.09000 * 117.49931 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0980 1.0959 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5542 3.6176 0.6732 8 14 3.4375 3.4171 3.4339 9 1 4.2392 2.3820 4.1347 10 1 4.1801 4.7031 3.4339 11 1 2.1397 3.5955 4.1332 12 6 2.1388 -1.1672 -0.0055 13 8 3.3517 -1.1672 -0.0105 14 6 1.3854 -2.4723 -0.0055 15 6 2.3796 -3.6352 -0.0130 16 7 1.6468 -4.9064 0.0584 17 6 2.5088 -6.0331 -0.3229 18 6 4.0047 -5.7551 -0.4841 19 6 3.1353 -6.0026 -1.7185 20 6 1.0751 -5.1101 1.3962 21 6 1.6692 -6.2278 2.2556 22 6 0.2801 -6.3951 1.6365 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.1499 1.1384 -0.5138 27 1 1.6085 2.0284 -0.5138 28 1 4.0317 4.4431 0.8505 29 1 0.7624 -2.5321 0.8869 30 1 0.7550 -2.5279 -0.8930 31 1 2.9667 -3.6053 -0.9308 32 1 3.0444 -3.5503 0.8466 33 1 2.2173 -7.0043 0.0768 34 1 4.3491 -4.7361 -0.3076 35 1 4.6976 -6.5435 -0.1902 36 1 3.2562 -6.9539 -2.2367 37 1 2.9077 -5.1466 -2.3537 38 1 0.7388 -4.2074 1.9061 39 1 2.4840 -6.8123 1.8282 40 1 1.7240 -6.0606 3.3312 41 1 -0.5790 -6.3378 2.3049 42 1 0.1810 -7.0891 0.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599598521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = 30.557419 kcal Electronic energy + Delta-G solvation = -20552.969211 eV Core-core repulsion = 17535.309263 eV Total energy + Delta-G solvation = -3017.659948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91104 -38.72545 -36.15094 -34.82015 -33.41142 -32.54386 -29.68748 -27.60736 -25.76541 -24.08532 -22.91539 -22.56669 -22.27284 -21.98649 -18.98615 -18.32572 -17.04703 -16.72871 -16.50469 -15.67086 -15.25426 -15.03068 -14.31411 -14.28041 -14.08197 -13.49292 -13.07286 -12.76245 -12.38416 -12.15117 -11.99033 -11.91322 -11.75256 -11.69839 -11.53844 -11.25928 -11.02072 -10.90862 -10.72393 -10.57597 -10.53710 -10.40510 -10.26617 -10.14967 -9.63179 -8.87529 -8.42405 -8.09147 -7.61743 -6.03279 -4.08165 3.31880 3.32759 3.36350 3.38686 3.48059 3.66861 3.96125 4.18548 4.45871 4.56729 4.75476 4.76665 4.84624 4.89398 4.96722 5.20360 5.26178 5.30919 5.40602 5.48404 5.50655 5.59379 5.65609 5.70450 5.79697 5.90303 5.95103 5.95933 5.96973 6.06975 6.09589 6.14972 6.24508 6.97035 7.00141 7.08718 7.45983 7.56203 7.93104 8.24805 8.44727 8.91120 9.11944 9.56865 11.04789 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.004188 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.090699 B = 6684.940259 C = 6851.444385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.133 4.133 15 C 0.068 3.932 16 N -0.477 5.477 17 C 0.017 3.983 18 C -0.219 4.219 19 C -0.172 4.172 20 C 0.024 3.976 21 C -0.218 4.218 22 C -0.172 4.172 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 -19.035 -1.179 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.174 4.174 15 C -0.059 4.059 16 N -0.197 5.197 17 C -0.092 4.092 18 C -0.258 4.258 19 C -0.209 4.209 20 C -0.086 4.086 21 C -0.257 4.257 22 C -0.210 4.210 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.697 -18.771 -1.580 19.993 hybrid contribution 0.710 0.376 1.564 1.758 sum -5.987 -18.396 -0.016 19.345 Atomic orbital electron populations 1.21634 0.81428 1.02530 1.00439 1.48153 1.06192 1.07865 1.71288 1.19280 0.92568 0.78170 0.97441 1.21394 1.36551 1.06265 0.92293 0.92592 1.24935 0.95367 0.96387 0.97408 1.69927 1.38335 1.14390 1.30773 0.86562 0.78349 0.77827 0.84700 1.20216 1.21142 1.20254 1.20302 0.88062 0.85177 0.77430 1.90663 1.13989 1.87385 1.50411 1.21626 0.99190 0.92557 1.04030 1.21932 0.94688 0.86412 1.02854 1.61693 1.33177 1.01477 1.23347 1.22640 0.90736 0.95586 1.00253 1.23636 0.94638 1.03960 1.03533 1.23087 1.03358 1.03381 0.91109 1.22691 1.02453 0.93777 0.89637 1.23578 0.97267 1.04919 0.99964 1.23072 0.94762 1.00287 1.02899 0.93733 0.92400 0.90862 0.93860 0.95052 0.92667 0.89622 0.88949 0.89666 0.92949 0.86180 0.87533 0.88968 0.88595 0.88364 0.85997 0.88306 0.88865 0.88497 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.84 0.61 1.95 16 2 N -0.60 -12.95 2.86 -182.95 -0.52 -13.47 16 3 C 0.24 6.50 5.17 -5.19 -0.03 6.47 16 4 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.50 10.52 7.67 -10.99 -0.08 10.44 16 13 O -0.55 -13.77 15.53 5.55 0.09 -13.68 16 14 C -0.13 -2.01 4.36 -27.89 -0.12 -2.13 16 15 C 0.07 0.99 2.89 -3.82 -0.01 0.98 16 16 N -0.48 -5.80 4.90 -218.72 -1.07 -6.87 16 17 C 0.02 0.18 4.73 -67.71 -0.32 -0.14 16 18 C -0.22 -2.42 9.56 -26.73 -0.26 -2.68 16 19 C -0.17 -1.77 9.92 -26.73 -0.27 -2.04 16 20 C 0.02 0.26 5.81 -67.71 -0.39 -0.13 16 21 C -0.22 -2.11 9.57 -26.73 -0.26 -2.37 16 22 C -0.17 -1.55 9.90 -26.74 -0.26 -1.82 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.76 6.45 -51.93 -0.33 0.42 16 25 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.04 1.29 7.41 -51.93 -0.38 0.91 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.16 5.95 -51.93 -0.31 0.85 16 30 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.09 1.31 5.78 -51.93 -0.30 1.01 16 32 H 0.05 0.86 7.65 -51.93 -0.40 0.46 16 33 H 0.12 1.14 5.66 -51.93 -0.29 0.85 16 34 H 0.11 1.40 6.00 -51.93 -0.31 1.09 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.11 7.47 -51.93 -0.39 0.72 16 38 H 0.12 1.37 6.71 -51.93 -0.35 1.02 16 39 H 0.10 0.94 6.02 -51.93 -0.31 0.63 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.84 7.61 -51.93 -0.40 0.44 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -32.54 335.88 -9.23 -41.77 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.69 Total: 1.54 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.81 Total: -5.21 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.86 Total: -46.46 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.54 -9.23 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599598521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds