Wall clock time and date at job start Mon Mar 30 2020 01:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 120.00045 * 2 1 4 4 C 1.50703 * 109.47067 * 89.99754 * 3 2 1 5 5 H 1.08000 * 119.99952 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99965 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00399 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46887 * 60.00106 * 8 6 4 10 10 H 1.48501 * 109.47210 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47096 * 300.00550 * 8 6 4 12 12 C 1.34777 * 119.99996 * 180.27116 * 2 1 3 13 13 O 1.21287 * 119.99925 * 179.72991 * 12 2 1 14 14 C 1.50697 * 120.00096 * 359.72949 * 12 2 1 15 15 C 1.52999 * 109.47226 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.47136 * 177.04562 * 15 14 12 17 17 C 1.46899 * 111.00276 * 164.00288 * 16 15 14 18 18 C 1.53003 * 117.49508 * 10.00693 * 17 16 15 19 19 C 1.52998 * 60.00003 * 252.51020 * 18 17 16 20 20 C 1.46909 * 111.00085 * 287.95963 * 16 15 14 21 21 C 1.52998 * 117.49751 * 248.73981 * 20 16 15 22 22 C 1.52996 * 117.49897 * 180.11843 * 20 16 15 23 23 H 1.09007 * 109.46960 * 89.99915 * 1 2 3 24 24 H 1.08997 * 109.47407 * 210.00257 * 1 2 3 25 25 H 1.09000 * 109.47096 * 330.00493 * 1 2 3 26 26 H 1.09002 * 109.46996 * 209.99667 * 3 2 1 27 27 H 1.08995 * 109.47233 * 329.99773 * 3 2 1 28 28 H 0.96997 * 119.99928 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46756 * 299.99784 * 14 12 2 30 30 H 1.08998 * 109.47396 * 59.99461 * 14 12 2 31 31 H 1.08991 * 109.47346 * 297.04495 * 15 14 12 32 32 H 1.08996 * 109.47007 * 57.04905 * 15 14 12 33 33 H 1.08999 * 115.55084 * 155.70884 * 17 16 15 34 34 H 1.08999 * 117.49855 * 359.97438 * 18 17 16 35 35 H 1.09000 * 117.49666 * 145.01973 * 18 17 16 36 36 H 1.09001 * 117.49755 * 252.51514 * 19 18 17 37 37 H 1.08998 * 117.50042 * 107.48899 * 19 18 17 38 38 H 1.08994 * 115.54623 * 34.44410 * 20 16 15 39 39 H 1.09005 * 117.49681 * 359.97438 * 21 20 16 40 40 H 1.08994 * 117.49983 * 145.02056 * 21 20 16 41 41 H 1.09004 * 117.49652 * 214.97964 * 22 20 16 42 42 H 1.09000 * 117.49931 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0980 1.0959 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5542 3.6176 0.6732 8 14 3.4375 3.4171 3.4339 9 1 4.2392 2.3820 4.1347 10 1 4.1801 4.7031 3.4339 11 1 2.1397 3.5955 4.1332 12 6 2.1388 -1.1672 -0.0055 13 8 3.3517 -1.1672 -0.0105 14 6 1.3854 -2.4723 -0.0055 15 6 2.3796 -3.6352 -0.0130 16 7 1.6468 -4.9064 0.0584 17 6 2.5088 -6.0331 -0.3229 18 6 4.0047 -5.7551 -0.4841 19 6 3.1353 -6.0026 -1.7185 20 6 1.0751 -5.1101 1.3962 21 6 1.6692 -6.2278 2.2556 22 6 0.2801 -6.3951 1.6365 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 3.1499 1.1384 -0.5138 27 1 1.6085 2.0284 -0.5138 28 1 4.0317 4.4431 0.8505 29 1 0.7624 -2.5321 0.8869 30 1 0.7550 -2.5279 -0.8930 31 1 2.9667 -3.6053 -0.9308 32 1 3.0444 -3.5503 0.8466 33 1 2.2173 -7.0043 0.0768 34 1 4.3491 -4.7361 -0.3076 35 1 4.6976 -6.5435 -0.1902 36 1 3.2562 -6.9539 -2.2367 37 1 2.9077 -5.1466 -2.3537 38 1 0.7388 -4.2074 1.9061 39 1 2.4840 -6.8123 1.8282 40 1 1.7240 -6.0606 3.3312 41 1 -0.5790 -6.3378 2.3049 42 1 0.1810 -7.0891 0.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599598521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:15 Heat of formation + Delta-G solvation = 9.392992 kcal Electronic energy + Delta-G solvation = -20553.886970 eV Core-core repulsion = 17535.309263 eV Total energy + Delta-G solvation = -3018.577707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04100 -40.18145 -36.95803 -36.61660 -34.85039 -34.37277 -31.02920 -29.39391 -27.30860 -25.69636 -23.93257 -23.69319 -23.28417 -22.92245 -20.16156 -19.70754 -18.71131 -18.04608 -17.90510 -17.13792 -16.84821 -16.52383 -16.09158 -15.24338 -15.08574 -14.73622 -14.34179 -14.19314 -14.00377 -13.63632 -13.44447 -13.24052 -13.11660 -12.89941 -12.74330 -12.63767 -12.50949 -12.31562 -12.20075 -12.07533 -11.84264 -11.72124 -11.38732 -11.19491 -11.10615 -10.65377 -10.62069 -9.42647 -9.02428 -8.23390 -6.38721 1.35438 1.39786 1.47237 1.82698 2.20692 2.38158 2.65529 2.87518 3.05921 3.25756 3.68349 3.79420 3.88493 3.97375 3.99123 4.02853 4.09987 4.21470 4.34291 4.43731 4.56569 4.65826 4.72700 4.76088 4.82117 4.86043 4.92238 4.96019 5.00812 5.05295 5.06580 5.12553 5.21500 5.22121 5.28425 5.54843 5.83274 5.97923 6.04947 6.10291 6.68162 6.78123 7.26898 7.47178 8.83620 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.004188 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.090699 B = 6684.940259 C = 6851.444385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.114 4.114 15 C 0.080 3.920 16 N -0.474 5.474 17 C 0.017 3.983 18 C -0.227 4.227 19 C -0.166 4.166 20 C -0.002 4.002 21 C -0.219 4.219 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.066 0.934 26 H -0.004 1.004 27 H 0.023 0.977 28 H 0.268 0.732 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -20.916 -0.084 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.183 1.183 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.154 4.154 15 C -0.048 4.048 16 N -0.194 5.194 17 C -0.092 4.092 18 C -0.266 4.266 19 C -0.204 4.204 20 C -0.111 4.111 21 C -0.258 4.258 22 C -0.189 4.189 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.014 0.986 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.806 -20.675 -0.488 22.477 hybrid contribution 1.354 0.937 1.179 2.025 sum -7.452 -19.738 0.692 21.110 Atomic orbital electron populations 1.21940 0.77761 1.04021 1.02637 1.48195 1.08486 1.06367 1.71120 1.18757 0.91069 0.80481 0.96059 1.21671 1.36984 1.06610 0.92989 0.92868 1.25878 0.94844 0.96383 1.02071 1.70051 1.38830 1.14837 1.33154 0.85461 0.78898 0.77359 0.79055 1.20397 1.20245 1.18323 1.21345 0.87773 0.86707 0.75838 1.90632 1.16730 1.88276 1.52711 1.21532 0.98790 0.88848 1.06225 1.21677 0.94211 0.87906 1.00972 1.61724 1.32678 1.00638 1.24387 1.22812 0.90087 0.95783 1.00524 1.23573 0.95410 1.02864 1.04793 1.23153 1.02443 1.03987 0.90792 1.22809 1.04198 0.94716 0.89386 1.23612 0.98051 1.04058 1.00035 1.23135 0.94686 0.98240 1.02803 0.91121 0.88724 0.91562 0.98567 0.95856 0.92363 0.87241 0.86358 0.91179 0.95667 0.84230 0.90423 0.87406 0.86210 0.89696 0.86338 0.88197 0.88531 0.86989 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.24 127.77 1.31 3.67 16 2 N -0.61 -26.46 2.86 -851.12 -2.43 -28.89 16 3 C 0.26 14.27 5.17 85.63 0.44 14.72 16 4 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.42 5.46 84.65 0.46 0.88 16 7 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 8 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 C 0.49 21.00 7.67 87.66 0.67 21.67 16 13 O -0.60 -31.98 15.53 -3.05 -0.05 -32.03 16 14 C -0.11 -3.29 4.36 29.85 0.13 -3.16 16 15 C 0.08 2.34 2.89 86.30 0.25 2.59 16 16 N -0.47 -10.80 4.90 -845.91 -4.14 -14.94 16 17 C 0.02 0.33 4.73 44.92 0.21 0.54 16 18 C -0.23 -4.97 9.56 30.59 0.29 -4.68 16 19 C -0.17 -3.23 9.92 30.59 0.30 -2.92 16 20 C 0.00 -0.05 5.81 44.91 0.26 0.21 16 21 C -0.22 -3.74 9.57 30.59 0.29 -3.44 16 22 C -0.15 -2.22 9.90 30.59 0.30 -1.92 16 23 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.09 2.15 6.45 -2.39 -0.02 2.13 16 25 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 26 H 0.00 -0.24 7.41 -2.39 -0.02 -0.26 16 27 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.11 2.68 5.95 -2.38 -0.01 2.66 16 30 H 0.12 2.86 8.10 -2.39 -0.02 2.84 16 31 H 0.07 2.24 5.78 -2.39 -0.01 2.22 16 32 H 0.02 0.86 7.65 -2.39 -0.02 0.84 16 33 H 0.14 2.25 5.66 -2.39 -0.01 2.24 16 34 H 0.08 2.17 6.00 -2.39 -0.01 2.16 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.89 7.47 -2.39 -0.02 1.87 16 38 H 0.12 2.41 6.71 -2.39 -0.02 2.39 16 39 H 0.10 1.68 6.02 -2.38 -0.01 1.67 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.10 1.40 7.61 -2.39 -0.02 1.38 16 Total: -1.00 -73.90 335.88 1.86 -72.04 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.00 Total: 16.74 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.17 Total: -3.53 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.29 Total: -100.60 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.05 Total: -32.03 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -73.90 1.86 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599598521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.436 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds