Wall clock time and date at job start Mon Mar 30 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47341 * 2 1 4 4 C 1.46494 * 120.00428 * 270.00261 * 3 2 1 5 5 C 1.50699 * 109.46845 * 270.00094 * 4 3 2 6 6 H 1.08002 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99734 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99999 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99858 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47285 * 60.00083 * 9 7 5 11 11 H 1.48504 * 109.46996 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47350 * 299.99983 * 9 7 5 13 13 C 1.34781 * 119.99371 * 90.00110 * 3 2 1 14 14 O 1.21290 * 119.99563 * 180.02562 * 13 3 2 15 15 C 1.50691 * 120.00347 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47158 * 182.19277 * 15 13 3 17 17 C 1.46907 * 110.99873 * 294.71095 * 16 15 13 18 18 C 1.53000 * 117.49530 * 357.68062 * 17 16 15 19 19 C 1.53000 * 60.00012 * 252.50729 * 18 17 16 20 20 C 1.46894 * 111.00090 * 58.66843 * 16 15 13 21 21 C 1.53002 * 117.49927 * 130.49208 * 20 16 15 22 22 C 1.52992 * 117.50118 * 61.86518 * 20 16 15 23 23 H 1.08997 * 109.46949 * 300.00021 * 1 2 3 24 24 H 1.09000 * 109.47061 * 59.99564 * 1 2 3 25 25 H 1.08994 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47428 * 240.00006 * 2 1 3 27 27 H 1.09000 * 109.47061 * 120.00436 * 2 1 3 28 28 H 1.09005 * 109.46803 * 29.99278 * 4 3 2 29 29 H 1.08998 * 109.47379 * 149.99776 * 4 3 2 30 30 H 0.97003 * 120.00355 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47399 * 302.19217 * 15 13 3 32 32 H 1.09005 * 109.47233 * 62.19501 * 15 13 3 33 33 H 1.08995 * 115.54983 * 143.38728 * 17 16 15 34 34 H 1.08996 * 117.50143 * 359.97438 * 18 17 16 35 35 H 1.09009 * 117.49564 * 145.01873 * 18 17 16 36 36 H 1.08996 * 117.50271 * 252.51256 * 19 18 17 37 37 H 1.08999 * 117.49741 * 107.49044 * 19 18 17 38 38 H 1.09008 * 115.54645 * 276.19508 * 20 16 15 39 39 H 1.08993 * 117.50001 * 359.97438 * 21 20 16 40 40 H 1.09001 * 117.49518 * 145.01703 * 21 20 16 41 41 H 1.09002 * 117.50155 * 214.97988 * 22 20 16 42 42 H 1.09005 * 117.50090 * 0.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3489 3.1251 -3.6184 9 14 5.9135 2.0967 -3.4168 10 1 6.1417 0.6401 -3.5937 11 1 6.1607 2.7958 -4.7035 12 1 6.8408 2.6209 -2.3821 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1674 15 6 1.9913 1.3062 2.4723 16 7 2.2594 2.2230 3.5884 17 6 3.6815 2.5881 3.6399 18 6 4.6138 1.9436 2.6121 19 6 4.6728 1.5080 4.0776 20 6 1.4115 3.4194 3.5023 21 6 0.6467 3.8353 4.7605 22 6 -0.1033 3.2187 3.5780 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5818 1.6877 -2.0283 29 1 2.0956 3.1411 -1.1383 30 1 3.6747 3.5150 -4.4447 31 1 0.9526 0.9782 2.5130 32 1 2.6490 0.4402 2.5474 33 1 3.8927 3.6152 3.9371 34 1 4.1722 1.2485 1.8981 35 1 5.4387 2.5469 2.2328 36 1 5.5363 1.8246 4.6625 37 1 4.2698 0.5265 4.3275 38 1 1.7823 4.2126 2.8530 39 1 0.7724 3.2210 5.6520 40 1 0.5143 4.9024 4.9392 41 1 -0.7293 3.8800 2.9789 42 1 -0.4708 2.1988 3.6921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599599540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:07 Heat of formation + Delta-G solvation = 34.710653 kcal Electronic energy + Delta-G solvation = -21647.764848 eV Core-core repulsion = 18630.284997 eV Total energy + Delta-G solvation = -3017.479851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11408 -37.66193 -36.15050 -35.16876 -32.86587 -31.89782 -30.07904 -28.07795 -26.09028 -23.05589 -22.65853 -22.13890 -21.98539 -21.33786 -19.94389 -18.13022 -16.96996 -16.58510 -16.23271 -15.58262 -15.15995 -14.86518 -14.37249 -13.85966 -13.74089 -13.37197 -12.90352 -12.68892 -12.31168 -12.22213 -11.97266 -11.74629 -11.46796 -11.28823 -11.18132 -11.02240 -10.95748 -10.80041 -10.70133 -10.53458 -10.20192 -10.13420 -10.02878 -9.81892 -9.62304 -9.23060 -8.43714 -7.78856 -7.62600 -6.04584 -4.09152 3.30556 3.35068 3.36650 3.44596 3.69599 3.92301 4.03242 4.38577 4.44834 5.04832 5.11187 5.17207 5.22071 5.26887 5.29962 5.31531 5.32159 5.35014 5.58910 5.62226 5.67690 5.76382 5.78649 5.90421 5.94457 6.04317 6.07945 6.22815 6.27074 6.31712 6.41565 6.45222 6.47882 7.00020 7.12754 7.32483 7.44938 7.56820 7.91944 8.24001 8.44472 8.90263 9.11566 9.55924 11.03393 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.006434 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.499807 B = 4350.525849 C = 4904.113023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.482 3.518 14 O -0.534 6.534 15 C 0.029 3.971 16 N -0.461 5.461 17 C 0.039 3.961 18 C -0.188 4.188 19 C -0.183 4.183 20 C 0.015 3.985 21 C -0.169 4.169 22 C -0.176 4.176 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -5.073 13.711 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.268 3.732 14 O -0.411 6.411 15 C -0.102 4.102 16 N -0.181 5.181 17 C -0.070 4.070 18 C -0.226 4.226 19 C -0.221 4.221 20 C -0.094 4.094 21 C -0.207 4.207 22 C -0.214 4.214 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.914 -4.593 13.962 15.497 hybrid contribution 1.177 0.112 -1.306 1.762 sum -3.737 -4.481 12.655 13.935 Atomic orbital electron populations 1.22215 0.96800 1.01396 1.02284 1.21404 0.93546 0.84373 1.02533 1.48339 1.63672 1.13126 1.07904 1.19212 0.96103 0.93522 0.78314 1.21375 0.96904 1.31798 1.06141 0.92647 1.24925 0.97729 0.94972 0.96431 1.69920 1.35691 1.33508 1.14330 0.86592 0.84945 0.78251 0.77830 1.20266 1.21197 1.20232 1.21187 0.78531 0.87628 0.85902 1.90642 1.45595 1.18005 1.86903 1.22454 1.03108 0.96605 0.88075 1.62010 1.03516 1.13663 1.38925 1.22329 0.84687 0.96670 1.03335 1.23417 1.03253 1.04219 0.91737 1.23178 1.01006 0.99707 0.98250 1.22570 0.91103 0.95186 1.00509 1.23041 1.03961 1.00539 0.93119 1.22981 0.94037 1.02113 1.02231 0.93083 0.92082 0.92170 0.90005 0.91921 0.95307 0.94113 0.92713 0.88630 0.88586 0.87097 0.88522 0.88877 0.88989 0.89082 0.87076 0.88569 0.89105 0.88906 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.21 37.16 0.38 -1.86 16 2 C 0.11 1.68 5.90 -4.04 -0.02 1.65 16 3 N -0.60 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 5 C -0.52 -14.70 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.48 9.61 5.22 -10.99 -0.06 9.55 16 14 O -0.53 -12.62 11.86 5.55 0.07 -12.56 16 15 C 0.03 0.44 3.73 -4.98 -0.02 0.42 16 16 N -0.46 -7.02 5.03 -220.15 -1.11 -8.13 16 17 C 0.04 0.61 5.14 -67.71 -0.35 0.26 16 18 C -0.19 -3.20 7.99 -26.73 -0.21 -3.41 16 19 C -0.18 -2.49 10.16 -26.73 -0.27 -2.76 16 20 C 0.01 0.22 3.90 -67.72 -0.26 -0.04 16 21 C -0.17 -2.05 10.46 -26.73 -0.28 -2.33 16 22 C -0.18 -2.27 9.84 -26.73 -0.26 -2.54 16 23 H 0.05 0.65 7.17 -51.93 -0.37 0.28 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 27 H 0.06 0.83 6.50 -51.93 -0.34 0.49 16 28 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.10 1.31 6.20 -51.93 -0.32 0.99 16 32 H 0.10 1.38 6.04 -51.93 -0.31 1.07 16 33 H 0.11 1.75 7.95 -51.93 -0.41 1.34 16 34 H 0.10 1.81 4.90 -51.93 -0.25 1.55 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 2.04 6.66 -51.92 -0.35 1.69 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.13 7.64 -51.93 -0.40 0.73 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -31.24 333.94 -9.44 -40.67 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.91 Total: 4.80 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.81 Total: -8.03 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.80 Total: -46.79 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.24 -9.44 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599599540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.385 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds