Wall clock time and date at job start Mon Mar 30 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47341 * 2 1 4 4 C 1.46494 * 120.00428 * 270.00261 * 3 2 1 5 5 C 1.50699 * 109.46845 * 270.00094 * 4 3 2 6 6 H 1.08002 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99734 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99999 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99858 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47285 * 60.00083 * 9 7 5 11 11 H 1.48504 * 109.46996 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47350 * 299.99983 * 9 7 5 13 13 C 1.34781 * 119.99371 * 90.00110 * 3 2 1 14 14 O 1.21290 * 119.99563 * 180.02562 * 13 3 2 15 15 C 1.50691 * 120.00347 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47158 * 182.19277 * 15 13 3 17 17 C 1.46907 * 110.99873 * 294.71095 * 16 15 13 18 18 C 1.53000 * 117.49530 * 357.68062 * 17 16 15 19 19 C 1.53000 * 60.00012 * 252.50729 * 18 17 16 20 20 C 1.46894 * 111.00090 * 58.66843 * 16 15 13 21 21 C 1.53002 * 117.49927 * 130.49208 * 20 16 15 22 22 C 1.52992 * 117.50118 * 61.86518 * 20 16 15 23 23 H 1.08997 * 109.46949 * 300.00021 * 1 2 3 24 24 H 1.09000 * 109.47061 * 59.99564 * 1 2 3 25 25 H 1.08994 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47428 * 240.00006 * 2 1 3 27 27 H 1.09000 * 109.47061 * 120.00436 * 2 1 3 28 28 H 1.09005 * 109.46803 * 29.99278 * 4 3 2 29 29 H 1.08998 * 109.47379 * 149.99776 * 4 3 2 30 30 H 0.97003 * 120.00355 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47399 * 302.19217 * 15 13 3 32 32 H 1.09005 * 109.47233 * 62.19501 * 15 13 3 33 33 H 1.08995 * 115.54983 * 143.38728 * 17 16 15 34 34 H 1.08996 * 117.50143 * 359.97438 * 18 17 16 35 35 H 1.09009 * 117.49564 * 145.01873 * 18 17 16 36 36 H 1.08996 * 117.50271 * 252.51256 * 19 18 17 37 37 H 1.08999 * 117.49741 * 107.49044 * 19 18 17 38 38 H 1.09008 * 115.54645 * 276.19508 * 20 16 15 39 39 H 1.08993 * 117.50001 * 359.97438 * 21 20 16 40 40 H 1.09001 * 117.49518 * 145.01703 * 21 20 16 41 41 H 1.09002 * 117.50155 * 214.97988 * 22 20 16 42 42 H 1.09005 * 117.50090 * 0.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3489 3.1251 -3.6184 9 14 5.9135 2.0967 -3.4168 10 1 6.1417 0.6401 -3.5937 11 1 6.1607 2.7958 -4.7035 12 1 6.8408 2.6209 -2.3821 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1674 15 6 1.9913 1.3062 2.4723 16 7 2.2594 2.2230 3.5884 17 6 3.6815 2.5881 3.6399 18 6 4.6138 1.9436 2.6121 19 6 4.6728 1.5080 4.0776 20 6 1.4115 3.4194 3.5023 21 6 0.6467 3.8353 4.7605 22 6 -0.1033 3.2187 3.5780 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5818 1.6877 -2.0283 29 1 2.0956 3.1411 -1.1383 30 1 3.6747 3.5150 -4.4447 31 1 0.9526 0.9782 2.5130 32 1 2.6490 0.4402 2.5474 33 1 3.8927 3.6152 3.9371 34 1 4.1722 1.2485 1.8981 35 1 5.4387 2.5469 2.2328 36 1 5.5363 1.8246 4.6625 37 1 4.2698 0.5265 4.3275 38 1 1.7823 4.2126 2.8530 39 1 0.7724 3.2210 5.6520 40 1 0.5143 4.9024 4.9392 41 1 -0.7293 3.8800 2.9789 42 1 -0.4708 2.1988 3.6921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599599540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:07 Heat of formation + Delta-G solvation = 14.616746 kcal Electronic energy + Delta-G solvation = -21648.636185 eV Core-core repulsion = 18630.284997 eV Total energy + Delta-G solvation = -3018.351188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53059 -39.06219 -37.28829 -36.78816 -34.94478 -33.18386 -31.58266 -29.71754 -27.76600 -24.86623 -24.06067 -23.28252 -23.12926 -22.49343 -21.32141 -19.64175 -18.63075 -18.17386 -17.85650 -17.16951 -16.52270 -16.32583 -16.01873 -15.29525 -15.09110 -14.69800 -14.40280 -14.15666 -13.88486 -13.51281 -13.34712 -13.26952 -13.09905 -12.74659 -12.69216 -12.52385 -12.34665 -12.22412 -12.18964 -11.99810 -11.85986 -11.75483 -11.36701 -11.14310 -10.98648 -10.74292 -10.66257 -9.38756 -9.11521 -8.23779 -6.38352 1.32875 1.36739 1.44073 1.89064 2.29268 2.43868 2.55900 2.91727 3.05312 3.17578 3.75938 3.87082 4.01075 4.06019 4.07984 4.14436 4.16504 4.24892 4.41330 4.45122 4.49198 4.62824 4.79020 4.79259 4.79814 4.94060 4.97331 4.99336 5.04353 5.05802 5.17790 5.21728 5.24533 5.32605 5.38089 5.57655 5.81472 5.89073 6.06219 6.09933 6.69627 6.84775 7.28047 7.54776 8.82775 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.006434 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.499807 B = 4350.525849 C = 4904.113023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.267 3.733 5 C -0.536 4.536 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.477 3.523 14 O -0.580 6.580 15 C 0.040 3.960 16 N -0.444 5.444 17 C 0.026 3.974 18 C -0.215 4.215 19 C -0.142 4.142 20 C -0.017 4.017 21 C -0.142 4.142 22 C -0.168 4.168 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.016 0.984 29 H -0.008 1.008 30 H 0.266 0.734 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 -7.383 15.988 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.575 4.575 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.265 3.735 14 O -0.460 6.460 15 C -0.091 4.091 16 N -0.164 5.164 17 C -0.083 4.083 18 C -0.253 4.253 19 C -0.179 4.179 20 C -0.126 4.126 21 C -0.180 4.180 22 C -0.206 4.206 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.034 0.966 29 H 0.010 0.990 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.059 -6.944 16.262 18.392 hybrid contribution 1.187 0.889 -2.011 2.499 sum -3.872 -6.055 14.250 15.960 Atomic orbital electron populations 1.22146 0.94547 1.03515 1.01600 1.21725 0.95385 0.81612 1.03674 1.48365 1.64113 1.14933 1.06340 1.18591 0.95008 0.91235 0.80661 1.21643 0.97833 1.31712 1.06285 0.93045 1.25836 1.02195 0.94578 0.96521 1.70047 1.37761 1.34373 1.14785 0.85528 0.79264 0.79062 0.77333 1.18406 1.20360 1.20493 1.22110 0.77115 0.87222 0.87032 1.90631 1.47443 1.20315 1.87657 1.22539 1.05014 0.96511 0.84996 1.62197 1.03058 1.13420 1.37707 1.22447 0.85394 0.97323 1.03142 1.23265 1.03545 1.04975 0.93549 1.23257 1.00265 0.99591 0.94820 1.22448 0.92634 0.94736 1.02739 1.23102 1.00972 1.01485 0.92440 1.23075 0.92056 1.03143 1.02314 0.92068 0.94478 0.88554 0.91203 0.88413 0.96631 0.99008 0.92500 0.85987 0.86751 0.87999 0.90303 0.91219 0.86864 0.87094 0.91306 0.87044 0.88086 0.89162 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.21 71.98 0.74 -3.20 16 2 C 0.10 3.00 5.90 86.38 0.51 3.51 16 3 N -0.61 -25.53 2.46 -826.15 -2.03 -27.56 16 4 C 0.27 14.59 5.16 85.63 0.44 15.03 16 5 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 C 0.48 19.39 5.22 87.65 0.46 19.85 16 14 O -0.58 -29.03 11.86 -3.06 -0.04 -29.07 16 15 C 0.04 1.16 3.73 85.55 0.32 1.48 16 16 N -0.44 -12.81 5.03 -850.41 -4.28 -17.09 16 17 C 0.03 0.81 5.14 44.91 0.23 1.04 16 18 C -0.21 -7.36 7.99 30.59 0.24 -7.11 16 19 C -0.14 -3.48 10.16 30.59 0.31 -3.17 16 20 C -0.02 -0.51 3.90 44.91 0.18 -0.33 16 21 C -0.14 -3.14 10.46 30.60 0.32 -2.82 16 22 C -0.17 -4.02 9.84 30.59 0.30 -3.72 16 23 H 0.06 1.38 7.17 -2.39 -0.02 1.36 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 27 H 0.10 2.29 6.50 -2.39 -0.02 2.28 16 28 H 0.02 0.88 8.07 -2.38 -0.02 0.86 16 29 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.12 2.90 6.20 -2.39 -0.01 2.89 16 32 H 0.11 2.93 6.04 -2.38 -0.01 2.92 16 33 H 0.10 3.28 7.95 -2.39 -0.02 3.26 16 34 H 0.08 2.97 4.90 -2.39 -0.01 2.95 16 35 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.68 6.66 -2.38 -0.02 2.67 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.11 2.27 7.64 -2.38 -0.02 2.25 16 Total: -1.00 -72.58 333.94 1.70 -70.88 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.99 Total: 21.64 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.75 Total: -9.53 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -6.02 Total: -101.59 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.04 Total: -29.07 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.58 1.70 -70.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599599540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.495 kcal (2) G-P(sol) polarization free energy of solvation -72.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds