Wall clock time and date at job start Mon Mar 30 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46840 * 110.99900 * 2 1 4 4 C 1.53045 * 109.52340 * 174.15748 * 3 2 1 5 5 C 1.53120 * 109.27373 * 59.17817 * 4 3 2 6 6 C 1.53112 * 109.16113 * 302.34378 * 5 4 3 7 7 C 1.46837 * 110.99892 * 235.78673 * 2 1 3 8 8 H 1.08993 * 109.46553 * 65.83925 * 7 2 1 9 9 C 1.50700 * 109.46724 * 305.85501 * 7 2 1 10 10 O 1.21289 * 119.99573 * 340.00266 * 9 7 2 11 11 N 1.34768 * 120.00262 * 160.00233 * 9 7 2 12 12 C 1.46510 * 119.99964 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46750 * 174.90551 * 12 11 9 14 14 C 1.50695 * 115.55067 * 304.53365 * 13 12 11 15 15 H 1.08004 * 119.99881 * 95.20928 * 14 13 12 16 16 C 1.37879 * 120.00418 * 275.20027 * 14 13 12 17 17 N 1.31515 * 119.99503 * 5.99439 * 16 14 13 18 18 Si 1.86803 * 120.00244 * 185.98705 * 16 14 13 19 19 H 1.48497 * 109.46789 * 60.00424 * 18 16 14 20 20 H 1.48504 * 109.46757 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47203 * 300.00558 * 18 16 14 22 22 C 1.52999 * 117.49660 * 90.20953 * 13 12 11 23 23 C 1.53006 * 117.49651 * 158.87014 * 13 12 11 24 24 H 1.09003 * 109.47048 * 184.21482 * 1 2 3 25 25 H 1.09003 * 109.47336 * 304.21426 * 1 2 3 26 26 H 1.09003 * 109.47028 * 64.21190 * 1 2 3 27 27 H 1.08999 * 109.46491 * 294.17267 * 3 2 1 28 28 H 1.09000 * 109.46740 * 54.15065 * 3 2 1 29 29 H 1.08999 * 109.50165 * 179.11544 * 4 3 2 30 30 H 1.08992 * 109.50120 * 299.19951 * 4 3 2 31 31 H 1.08998 * 109.52347 * 62.25079 * 5 4 3 32 32 H 1.08998 * 109.51674 * 182.37388 * 5 4 3 33 33 H 1.08998 * 109.50678 * 297.71752 * 6 5 4 34 34 H 1.09004 * 109.50290 * 177.59692 * 6 5 4 35 35 H 0.96998 * 120.00629 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.47197 * 54.90612 * 12 11 9 37 37 H 1.08994 * 109.47033 * 294.90593 * 12 11 9 38 38 H 0.97000 * 120.00664 * 5.33956 * 17 16 14 39 39 H 1.09007 * 117.49633 * 214.99491 * 22 13 12 40 40 H 1.08992 * 117.50231 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49439 * 359.97423 * 23 13 12 42 42 H 1.08995 * 117.50106 * 144.99561 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.5182 -0.8715 -1.0207 7 6 1.9952 -0.7708 -1.1336 8 1 1.7327 -0.2708 -2.0659 9 6 1.3982 -2.1544 -1.1205 10 8 0.9164 -2.5973 -0.0993 11 7 1.3997 -2.8997 -2.2433 12 6 0.8188 -4.2447 -2.2306 13 6 0.8334 -4.8199 -3.6483 14 6 0.1521 -3.9799 -4.6976 15 1 0.7307 -3.2974 -5.3026 16 6 -1.2100 -4.0826 -4.8856 17 7 -1.9318 -4.8234 -4.0734 18 14 -2.0300 -3.1694 -6.2938 19 1 -1.4543 -3.6285 -7.5834 20 1 -3.4896 -3.4426 -6.2776 21 1 -1.7981 -1.7108 -6.1396 22 6 2.0672 -5.6183 -4.0739 23 6 0.7466 -6.3404 -3.7947 24 1 -0.3633 -1.0249 0.0755 25 1 -0.3634 0.5778 0.8498 26 1 -0.3633 0.4471 -0.9253 27 1 1.7325 1.8608 -0.9376 28 1 1.5635 1.9257 0.8330 29 1 3.9099 2.3512 0.1310 30 1 3.7813 0.8574 1.0910 31 1 3.8887 1.0353 -1.9559 32 1 5.1999 0.4724 -0.8910 33 1 3.7813 -1.3836 -0.0952 34 1 3.9099 -1.4304 -1.8706 35 1 1.7846 -2.5455 -3.0602 36 1 -0.2085 -4.1933 -1.8700 37 1 1.4034 -4.8867 -1.5719 38 1 -1.5201 -5.2349 -3.2974 39 1 2.3861 -5.5361 -5.1131 40 1 2.8682 -5.7342 -3.3439 41 1 0.6795 -6.9309 -2.8809 42 1 0.1968 -6.7332 -4.6499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602148398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:48 Heat of formation + Delta-G solvation = -22.189511 kcal Electronic energy + Delta-G solvation = -21187.773597 eV Core-core repulsion = 18167.826370 eV Total energy + Delta-G solvation = -3019.947227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01698 -37.92909 -36.79299 -33.74423 -33.11446 -31.96084 -31.14243 -27.10475 -26.10963 -24.91260 -23.51809 -22.75329 -21.38191 -20.14634 -19.76582 -19.28763 -17.14784 -16.40604 -15.82512 -15.24346 -14.84642 -14.58980 -14.33631 -14.13574 -13.80551 -13.72424 -13.15193 -13.07562 -12.80814 -12.64140 -12.36439 -12.07640 -11.68783 -11.53638 -11.31614 -11.00596 -10.89973 -10.83698 -10.73562 -10.50744 -10.44440 -10.17793 -9.70702 -9.14999 -8.71685 -8.57683 -8.41603 -8.26404 -8.11646 -6.41453 -4.19116 3.13288 3.36926 3.38137 3.57068 3.57365 4.11967 4.44262 4.71873 4.80028 4.85551 5.04519 5.13274 5.23642 5.23972 5.38285 5.46460 5.54118 5.57737 5.64449 5.75425 5.81868 5.83271 5.88356 6.01018 6.05043 6.11117 6.22147 6.28120 6.31695 6.34967 6.51546 6.62969 6.83196 7.03154 7.11854 7.15979 7.17146 7.28068 8.13246 8.24672 8.30154 8.77716 8.85445 9.56920 10.96215 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.005511 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.415089 B = 5079.068444 C = 5538.803398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.519 5.519 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.106 4.106 7 C 0.070 3.930 8 H 0.059 0.941 9 C 0.509 3.491 10 O -0.539 6.539 11 N -0.698 5.698 12 C 0.160 3.840 13 C 0.004 3.996 14 C -0.575 4.575 15 H 0.052 0.948 16 C 0.031 3.969 17 N -0.898 5.898 18 Si 1.063 2.937 19 H -0.288 1.288 20 H -0.282 1.282 21 H -0.289 1.289 22 C -0.194 4.194 23 C -0.170 4.170 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.020 0.980 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.276 0.724 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 10.513 4.496 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.244 5.244 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.042 4.042 8 H 0.077 0.923 9 C 0.293 3.707 10 O -0.417 6.417 11 N -0.347 5.347 12 C 0.036 3.964 13 C 0.003 3.997 14 C -0.613 4.613 15 H 0.070 0.930 16 C -0.176 4.176 17 N -0.531 5.531 18 Si 0.892 3.108 19 H -0.214 1.214 20 H -0.207 1.207 21 H -0.215 1.215 22 C -0.232 4.232 23 C -0.209 4.209 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.167 10.163 4.894 13.926 hybrid contribution 1.312 0.289 -0.450 1.417 sum 9.479 10.453 4.444 14.794 Atomic orbital electron populations 1.22595 0.86458 1.04601 0.99694 1.61642 1.08408 1.12484 1.41887 1.22134 0.95567 0.89119 1.00458 1.21607 0.94546 0.99937 0.99470 1.21575 0.99966 0.95442 0.98690 1.21530 0.91946 0.97699 1.03260 1.21587 0.96191 0.92930 0.93483 0.92292 1.20272 0.79794 0.86738 0.83855 1.90628 1.46251 1.72701 1.32102 1.45856 1.59704 1.17257 1.11929 1.20985 0.97246 0.81219 0.96918 1.19333 0.96902 0.90671 0.92799 1.21147 0.94448 1.25962 1.19733 0.92982 1.25741 0.94246 0.96397 1.01238 1.70719 1.39447 1.29282 1.13663 0.83629 0.76442 0.75600 0.75174 1.21418 1.20742 1.21546 1.22922 0.91152 1.08569 1.00518 1.22728 1.00085 0.96659 1.01391 0.88938 0.91591 0.96098 0.95019 0.90569 0.91586 0.90963 0.92032 0.91437 0.90498 0.90904 0.76488 0.91836 0.94450 0.91323 0.90065 0.91392 0.91352 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.10 60.07 0.55 0.77 16 2 N -0.52 -7.76 4.51 -236.33 -1.07 -8.83 16 3 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 4 C -0.12 -1.16 6.09 -26.65 -0.16 -1.33 16 5 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 6 C -0.11 -1.34 5.36 -26.65 -0.14 -1.48 16 7 C 0.07 1.07 2.24 -68.88 -0.15 0.91 16 8 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.51 9.75 6.27 -10.99 -0.07 9.68 16 10 O -0.54 -12.14 14.52 5.55 0.08 -12.06 16 11 N -0.70 -13.72 5.36 -60.29 -0.32 -14.04 16 12 C 0.16 3.57 5.49 -4.04 -0.02 3.55 16 13 C 0.00 0.09 1.03 -155.66 -0.16 -0.07 16 14 C -0.58 -14.77 8.26 -34.44 -0.28 -15.06 16 15 H 0.05 1.32 7.82 -52.48 -0.41 0.91 16 16 C 0.03 0.82 5.39 -17.82 -0.10 0.73 16 17 N -0.90 -25.79 13.46 55.43 0.75 -25.04 16 18 Si 1.06 24.05 29.91 -169.99 -5.08 18.97 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.19 -3.98 9.93 -26.69 -0.27 -4.25 16 23 C -0.17 -3.79 8.90 -26.69 -0.24 -4.03 16 24 H 0.09 1.73 5.62 -51.93 -0.29 1.44 16 25 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 7.35 8.15 -40.82 -0.33 7.01 16 36 H 0.06 1.61 7.51 -51.93 -0.39 1.22 16 37 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.28 7.92 6.13 -40.82 -0.25 7.67 16 39 H 0.08 1.65 8.14 -51.92 -0.42 1.23 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -29.75 333.95 -9.07 -38.82 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.23 Total: 8.46 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.23 Total: -11.31 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.64 Total: -47.91 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.75 -9.07 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602148398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.628 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds