Wall clock time and date at job start Mon Mar 30 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46840 * 110.99900 * 2 1 4 4 C 1.53045 * 109.52340 * 174.15748 * 3 2 1 5 5 C 1.53120 * 109.27373 * 59.17817 * 4 3 2 6 6 C 1.53112 * 109.16113 * 302.34378 * 5 4 3 7 7 C 1.46837 * 110.99892 * 235.78673 * 2 1 3 8 8 H 1.08993 * 109.46553 * 65.83925 * 7 2 1 9 9 C 1.50700 * 109.46724 * 305.85501 * 7 2 1 10 10 O 1.21289 * 119.99573 * 340.00266 * 9 7 2 11 11 N 1.34768 * 120.00262 * 160.00233 * 9 7 2 12 12 C 1.46510 * 119.99964 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46750 * 174.90551 * 12 11 9 14 14 C 1.50695 * 115.55067 * 304.53365 * 13 12 11 15 15 H 1.08004 * 119.99881 * 95.20928 * 14 13 12 16 16 C 1.37879 * 120.00418 * 275.20027 * 14 13 12 17 17 N 1.31515 * 119.99503 * 5.99439 * 16 14 13 18 18 Si 1.86803 * 120.00244 * 185.98705 * 16 14 13 19 19 H 1.48497 * 109.46789 * 60.00424 * 18 16 14 20 20 H 1.48504 * 109.46757 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47203 * 300.00558 * 18 16 14 22 22 C 1.52999 * 117.49660 * 90.20953 * 13 12 11 23 23 C 1.53006 * 117.49651 * 158.87014 * 13 12 11 24 24 H 1.09003 * 109.47048 * 184.21482 * 1 2 3 25 25 H 1.09003 * 109.47336 * 304.21426 * 1 2 3 26 26 H 1.09003 * 109.47028 * 64.21190 * 1 2 3 27 27 H 1.08999 * 109.46491 * 294.17267 * 3 2 1 28 28 H 1.09000 * 109.46740 * 54.15065 * 3 2 1 29 29 H 1.08999 * 109.50165 * 179.11544 * 4 3 2 30 30 H 1.08992 * 109.50120 * 299.19951 * 4 3 2 31 31 H 1.08998 * 109.52347 * 62.25079 * 5 4 3 32 32 H 1.08998 * 109.51674 * 182.37388 * 5 4 3 33 33 H 1.08998 * 109.50678 * 297.71752 * 6 5 4 34 34 H 1.09004 * 109.50290 * 177.59692 * 6 5 4 35 35 H 0.96998 * 120.00629 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.47197 * 54.90612 * 12 11 9 37 37 H 1.08994 * 109.47033 * 294.90593 * 12 11 9 38 38 H 0.97000 * 120.00664 * 5.33956 * 17 16 14 39 39 H 1.09007 * 117.49633 * 214.99491 * 22 13 12 40 40 H 1.08992 * 117.50231 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49439 * 359.97423 * 23 13 12 42 42 H 1.08995 * 117.50106 * 144.99561 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.5182 -0.8715 -1.0207 7 6 1.9952 -0.7708 -1.1336 8 1 1.7327 -0.2708 -2.0659 9 6 1.3982 -2.1544 -1.1205 10 8 0.9164 -2.5973 -0.0993 11 7 1.3997 -2.8997 -2.2433 12 6 0.8188 -4.2447 -2.2306 13 6 0.8334 -4.8199 -3.6483 14 6 0.1521 -3.9799 -4.6976 15 1 0.7307 -3.2974 -5.3026 16 6 -1.2100 -4.0826 -4.8856 17 7 -1.9318 -4.8234 -4.0734 18 14 -2.0300 -3.1694 -6.2938 19 1 -1.4543 -3.6285 -7.5834 20 1 -3.4896 -3.4426 -6.2776 21 1 -1.7981 -1.7108 -6.1396 22 6 2.0672 -5.6183 -4.0739 23 6 0.7466 -6.3404 -3.7947 24 1 -0.3633 -1.0249 0.0755 25 1 -0.3634 0.5778 0.8498 26 1 -0.3633 0.4471 -0.9253 27 1 1.7325 1.8608 -0.9376 28 1 1.5635 1.9257 0.8330 29 1 3.9099 2.3512 0.1310 30 1 3.7813 0.8574 1.0910 31 1 3.8887 1.0353 -1.9559 32 1 5.1999 0.4724 -0.8910 33 1 3.7813 -1.3836 -0.0952 34 1 3.9099 -1.4304 -1.8706 35 1 1.7846 -2.5455 -3.0602 36 1 -0.2085 -4.1933 -1.8700 37 1 1.4034 -4.8867 -1.5719 38 1 -1.5201 -5.2349 -3.2974 39 1 2.3861 -5.5361 -5.1131 40 1 2.8682 -5.7342 -3.3439 41 1 0.6795 -6.9309 -2.8809 42 1 0.1968 -6.7332 -4.6499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602148398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:47 Heat of formation + Delta-G solvation = -41.619165 kcal Electronic energy + Delta-G solvation = -21188.616130 eV Core-core repulsion = 18167.826370 eV Total energy + Delta-G solvation = -3020.789760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38059 -39.36518 -38.42879 -35.19646 -34.34169 -33.96738 -32.22615 -28.46400 -27.53831 -26.89257 -24.67726 -23.80764 -23.10836 -21.59953 -21.34369 -20.60096 -18.84531 -18.00660 -17.25184 -16.52452 -16.23375 -15.93743 -15.66850 -15.60176 -15.30973 -15.10592 -14.64099 -14.50117 -14.22318 -13.99090 -13.85544 -13.55830 -13.02807 -12.87274 -12.72126 -12.61875 -12.36231 -12.23282 -11.98445 -11.86373 -11.62838 -11.49213 -11.33567 -10.69871 -10.57937 -10.52922 -10.25369 -9.91639 -9.33898 -8.52449 -6.29743 1.53942 1.59820 1.61992 1.78328 2.15535 2.57907 2.91910 3.21980 3.26342 3.69896 3.80835 3.97361 4.04432 4.07282 4.15674 4.29035 4.33760 4.39983 4.43971 4.48434 4.53029 4.57513 4.74487 4.80875 4.82385 4.83083 4.95363 5.02733 5.04340 5.05146 5.16984 5.23139 5.31248 5.44258 5.45361 5.55925 5.89037 6.11058 6.12029 6.24836 6.66242 6.71250 7.31124 7.53444 8.85116 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.005511 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.415089 B = 5079.068444 C = 5538.803398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.052 3.948 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.103 4.103 7 C 0.077 3.923 8 H 0.068 0.932 9 C 0.505 3.495 10 O -0.577 6.577 11 N -0.695 5.695 12 C 0.175 3.825 13 C -0.021 4.021 14 C -0.572 4.572 15 H 0.055 0.945 16 C -0.019 4.019 17 N -0.931 5.931 18 Si 1.105 2.895 19 H -0.270 1.270 20 H -0.293 1.293 21 H -0.273 1.273 22 C -0.162 4.162 23 C -0.178 4.178 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.023 0.977 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.022 0.978 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 12.587 3.729 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.075 4.075 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.035 4.035 8 H 0.086 0.914 9 C 0.292 3.708 10 O -0.457 6.457 11 N -0.345 5.345 12 C 0.051 3.949 13 C -0.022 4.022 14 C -0.610 4.610 15 H 0.073 0.927 16 C -0.220 4.220 17 N -0.567 5.567 18 Si 0.929 3.071 19 H -0.196 1.196 20 H -0.219 1.219 21 H -0.198 1.198 22 C -0.199 4.199 23 C -0.216 4.216 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.244 0.756 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.440 12.260 4.112 16.619 hybrid contribution 0.643 -0.368 -0.164 0.758 sum 11.082 11.892 3.948 16.728 Atomic orbital electron populations 1.22471 0.87389 1.02377 1.00704 1.61665 1.07826 1.14722 1.41869 1.22290 0.96831 0.87018 1.01338 1.21626 0.93136 1.01468 0.99017 1.21583 1.00935 0.93386 0.99253 1.21564 0.89826 0.99843 1.02897 1.21597 0.97700 0.90082 0.94129 0.91450 1.21088 0.78802 0.88090 0.82848 1.90610 1.47787 1.73863 1.33479 1.45792 1.59577 1.16497 1.12641 1.20611 0.95146 0.82795 0.96385 1.19352 0.99296 0.90924 0.92611 1.21438 0.94427 1.25553 1.19584 0.92716 1.26980 0.95639 0.96605 1.02739 1.70830 1.39875 1.31546 1.14404 0.83077 0.75012 0.75537 0.73508 1.19572 1.21907 1.19793 1.22936 0.90508 1.04960 1.01476 1.22662 1.01583 0.96246 1.01132 0.92888 0.89613 0.95886 0.94283 0.89420 0.88830 0.91748 0.91015 0.89438 0.91959 0.90020 0.75555 0.95998 0.93987 0.92705 0.89436 0.88795 0.90346 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.10 127.69 1.16 1.74 16 2 N -0.54 -15.43 4.51 -901.60 -4.06 -19.49 16 3 C 0.05 1.07 5.46 86.33 0.47 1.54 16 4 C -0.11 -1.88 6.09 30.65 0.19 -1.69 16 5 C -0.11 -1.88 6.00 30.67 0.18 -1.69 16 6 C -0.10 -2.38 5.36 30.65 0.16 -2.22 16 7 C 0.08 2.25 2.24 44.20 0.10 2.35 16 8 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 9 C 0.51 19.55 6.27 87.66 0.55 20.10 16 10 O -0.58 -26.93 14.52 -3.06 -0.04 -26.97 16 11 N -0.70 -27.37 5.36 -463.05 -2.48 -29.86 16 12 C 0.18 7.98 5.49 86.38 0.47 8.45 16 13 C -0.02 -0.97 1.03 -52.93 -0.05 -1.03 16 14 C -0.57 -29.25 8.26 25.60 0.21 -29.04 16 15 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 16 C -0.02 -1.04 5.39 84.65 0.46 -0.58 16 17 N -0.93 -55.05 13.46 21.45 0.29 -54.76 16 18 Si 1.11 48.28 29.91 68.60 2.05 50.33 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 C -0.16 -6.32 9.93 30.62 0.30 -6.01 16 23 C -0.18 -7.93 8.90 30.62 0.27 -7.66 16 24 H 0.05 2.07 5.62 -2.39 -0.01 2.05 16 25 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 26 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.41 14.62 8.15 -92.71 -0.76 13.87 16 36 H 0.02 1.17 7.51 -2.39 -0.02 1.15 16 37 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 38 H 0.26 15.78 6.13 -92.71 -0.57 15.21 16 39 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -65.92 333.95 0.66 -65.26 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.43 Total: 31.24 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.48 Total: -15.73 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.26 Total: -104.11 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.04 Total: -26.97 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.33 kcal Total: -65.92 0.66 -65.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602148398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.636 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds