Wall clock time and date at job start Mon Mar 30 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00271 * 2 1 4 4 N 1.46499 * 109.47025 * 126.13944 * 3 2 1 5 5 C 1.46500 * 119.99913 * 277.46968 * 4 3 2 6 6 C 1.50700 * 109.47239 * 269.99961 * 5 4 3 7 7 H 1.07993 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99645 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47051 * 90.00042 * 10 8 6 12 12 H 1.48492 * 109.47295 * 210.00009 * 10 8 6 13 13 H 1.48506 * 109.47074 * 330.00603 * 10 8 6 14 14 C 1.34773 * 120.00215 * 97.47100 * 4 3 2 15 15 O 1.21280 * 120.00100 * 174.95440 * 14 4 3 16 16 C 1.50704 * 119.99915 * 355.23149 * 14 4 3 17 17 C 1.53008 * 115.54666 * 291.67291 * 16 14 4 18 18 N 1.46898 * 109.46972 * 306.26353 * 17 16 14 19 19 C 1.46895 * 110.99748 * 165.26983 * 18 17 16 20 20 C 1.46905 * 110.99894 * 289.22254 * 18 17 16 21 21 C 1.52996 * 117.49863 * 146.00276 * 16 14 4 22 22 C 1.52998 * 117.49926 * 77.34179 * 16 14 4 23 23 H 1.08002 * 119.99974 * 5.03677 * 1 2 3 24 24 H 1.07998 * 120.00189 * 185.03404 * 1 2 3 25 25 H 1.08002 * 120.00124 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46857 * 6.13979 * 3 2 1 27 27 H 1.09001 * 109.47278 * 246.13850 * 3 2 1 28 28 H 1.09002 * 109.47323 * 29.99947 * 5 4 3 29 29 H 1.09004 * 109.47108 * 150.00321 * 5 4 3 30 30 H 0.97009 * 119.99281 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47205 * 66.26484 * 17 16 14 32 32 H 1.08998 * 109.46723 * 186.26838 * 17 16 14 33 33 H 1.08996 * 109.47550 * 60.00142 * 19 18 17 34 34 H 1.09003 * 109.47256 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47035 * 299.99770 * 19 18 17 36 36 H 1.08994 * 109.47134 * 64.58521 * 20 18 17 37 37 H 1.09006 * 109.46664 * 184.58145 * 20 18 17 38 38 H 1.09004 * 109.47020 * 304.57663 * 20 18 17 39 39 H 1.09000 * 117.50092 * 359.97438 * 21 16 14 40 40 H 1.09001 * 117.49831 * 145.02559 * 21 16 14 41 41 H 1.09001 * 117.49806 * 214.98043 * 22 16 14 42 42 H 1.09004 * 117.49699 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0132 1.3206 1.1154 5 6 2.5585 1.6855 2.4595 6 6 2.6977 3.1739 2.6500 7 1 3.0857 3.7868 1.8500 8 6 2.3289 3.7534 3.8455 9 7 1.8559 3.0070 4.8197 10 14 2.5021 5.5982 4.0821 11 1 1.2496 6.2718 3.6545 12 1 2.7577 5.8917 5.5151 13 1 3.6367 6.0977 3.2644 14 6 4.3050 0.9993 0.9052 15 8 5.1095 1.1002 1.8072 16 6 4.7511 0.5205 -0.4523 17 6 4.2245 -0.8530 -0.8735 18 7 4.5451 -1.8401 0.1661 19 6 3.7701 -3.0737 -0.0225 20 6 5.9862 -2.1233 0.1967 21 6 6.1580 0.9088 -0.9112 22 6 4.9345 1.5730 -1.5475 23 1 -0.5400 0.9317 -0.0821 24 1 -0.5400 -0.9317 0.0821 25 1 1.8500 -0.9353 -0.0004 26 1 1.3604 2.1306 0.1099 27 1 2.6053 1.4119 -0.9398 28 1 1.5134 1.4001 2.5795 29 1 3.1646 1.1659 3.2016 30 1 1.5968 3.4147 5.6610 31 1 3.1438 -0.8027 -1.0060 32 1 4.6924 -1.1491 -1.8123 33 1 4.0029 -3.5038 -0.9965 34 1 4.0270 -3.7874 0.7603 35 1 2.7054 -2.8453 0.0288 36 1 6.5273 -1.2228 0.4871 37 1 6.1855 -2.9155 0.9184 38 1 6.3150 -2.4418 -0.7926 39 1 6.7609 1.5109 -0.2314 40 1 6.7084 0.1860 -1.5135 41 1 4.6804 1.2869 -2.5681 42 1 4.7321 2.6118 -1.2862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602152863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:46 Heat of formation + Delta-G solvation = 26.840687 kcal Electronic energy + Delta-G solvation = -21605.079607 eV Core-core repulsion = 18587.258489 eV Total energy + Delta-G solvation = -3017.821118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85857 -37.25154 -35.78318 -35.27560 -33.06447 -31.91710 -28.22802 -27.51371 -27.34417 -25.42157 -23.73083 -22.33379 -22.16408 -20.92156 -19.88384 -17.76339 -16.49082 -16.34425 -15.72459 -15.33884 -14.95791 -14.72404 -14.39017 -14.30347 -14.05304 -13.58862 -13.05529 -12.68303 -12.41513 -12.22304 -12.00015 -11.75595 -11.68849 -11.58567 -11.47925 -11.39374 -11.13949 -10.90100 -10.82109 -10.51869 -10.23009 -10.13073 -9.78490 -9.53035 -9.03747 -8.71690 -8.35544 -8.21944 -7.52376 -5.96032 -4.00117 2.52818 3.34246 3.40750 3.44421 3.47045 3.77404 4.12130 4.18485 4.51034 4.84096 4.93655 5.05343 5.18495 5.21729 5.31446 5.35936 5.38108 5.45404 5.54584 5.57429 5.69216 5.73293 5.77270 5.78649 5.88607 5.96971 6.08526 6.10916 6.13624 6.28600 6.34252 6.88859 7.01639 7.08137 7.12365 7.24151 7.57826 7.70555 8.01610 8.33859 8.60170 9.00581 9.29272 9.64684 11.11927 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.006366 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.526344 B = 4397.504909 C = 4827.893232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.137 3.863 4 N -0.587 5.587 5 C 0.251 3.749 6 C -0.522 4.522 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.559 3.441 15 O -0.534 6.534 16 C -0.145 4.145 17 C 0.089 3.911 18 N -0.538 5.538 19 C 0.026 3.974 20 C 0.027 3.973 21 C -0.150 4.150 22 C -0.164 4.164 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -9.317 -15.210 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C 0.013 3.987 4 N -0.318 5.318 5 C 0.132 3.868 6 C -0.561 4.561 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.345 3.655 15 O -0.411 6.411 16 C -0.149 4.149 17 C -0.039 4.039 18 N -0.261 5.261 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.188 4.188 22 C -0.202 4.202 23 H 0.115 0.885 24 H 0.111 0.889 25 H 0.128 0.872 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.259 -9.046 -14.036 16.851 hybrid contribution 0.146 0.555 -0.547 0.793 sum 2.406 -8.491 -14.583 17.045 Atomic orbital electron populations 1.23785 0.95874 1.01660 1.01122 1.23642 0.96277 0.99478 0.99410 1.20543 0.92774 0.94896 0.90497 1.48012 1.06927 1.65986 1.10836 1.19202 0.95138 0.95359 0.77077 1.21451 1.42411 0.92737 0.99508 0.92602 1.24927 0.95273 0.98235 0.95709 1.69948 1.43591 1.35255 1.04638 0.86534 0.78276 0.85443 0.77370 1.20725 1.21148 1.19958 1.18902 0.82449 0.76945 0.87195 1.90642 1.52294 1.53585 1.44569 1.21501 1.01683 0.96141 0.95566 1.21841 1.01578 0.88939 0.91515 1.61773 1.06637 1.10389 1.47333 1.22390 0.98688 0.91626 0.99507 1.22432 0.88085 1.02423 0.99165 1.22994 0.90298 1.02981 1.02487 1.23082 1.02516 0.97992 0.96627 0.88477 0.88913 0.87170 0.90084 0.90562 0.95127 0.94102 0.92846 0.88967 0.94476 0.96072 0.91301 0.91456 0.90340 0.91792 0.96273 0.87862 0.88774 0.88373 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.31 29.01 0.42 -2.12 16 2 C -0.17 -2.54 8.60 -36.03 -0.31 -2.85 16 3 C 0.14 2.34 5.37 -5.19 -0.03 2.31 16 4 N -0.59 -12.89 2.45 -176.43 -0.43 -13.32 16 5 C 0.25 6.81 5.13 -5.19 -0.03 6.78 16 6 C -0.52 -15.17 9.39 -34.44 -0.32 -15.49 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 10 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 14 C 0.56 12.11 6.57 -10.99 -0.07 12.04 16 15 O -0.53 -14.12 16.39 5.56 0.09 -14.03 16 16 C -0.15 -2.28 0.53 -155.66 -0.08 -2.36 16 17 C 0.09 1.19 4.46 -3.82 -0.02 1.17 16 18 N -0.54 -7.72 4.65 -251.25 -1.17 -8.89 16 19 C 0.03 0.30 9.54 60.06 0.57 0.87 16 20 C 0.03 0.35 9.21 60.07 0.55 0.91 16 21 C -0.15 -2.08 8.41 -26.70 -0.22 -2.31 16 22 C -0.16 -2.13 8.57 -26.69 -0.23 -2.36 16 23 H 0.10 1.29 7.86 -52.49 -0.41 0.87 16 24 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 25 H 0.11 1.61 4.92 -52.49 -0.26 1.35 16 26 H 0.08 1.44 7.79 -51.93 -0.40 1.03 16 27 H 0.08 1.11 5.39 -51.93 -0.28 0.83 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.09 1.19 3.90 -51.93 -0.20 0.98 16 32 H 0.04 0.43 7.93 -51.93 -0.41 0.01 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.07 0.75 6.94 -51.93 -0.36 0.39 16 36 H 0.08 1.17 6.64 -51.93 -0.35 0.83 16 37 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 38 H 0.02 0.21 8.03 -51.93 -0.42 -0.21 16 39 H 0.10 1.63 8.04 -51.93 -0.42 1.21 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -33.78 339.05 -7.36 -41.14 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.81 Total: 0.93 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 0.13 Total: -1.74 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.86 Total: -48.69 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.78 -7.36 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602152863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.984 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds