Wall clock time and date at job start Mon Mar 30 2020 01:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00271 * 2 1 4 4 N 1.46499 * 109.47025 * 126.13944 * 3 2 1 5 5 C 1.46500 * 119.99913 * 277.46968 * 4 3 2 6 6 C 1.50700 * 109.47239 * 269.99961 * 5 4 3 7 7 H 1.07993 * 119.99932 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99645 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00191 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47051 * 90.00042 * 10 8 6 12 12 H 1.48492 * 109.47295 * 210.00009 * 10 8 6 13 13 H 1.48506 * 109.47074 * 330.00603 * 10 8 6 14 14 C 1.34773 * 120.00215 * 97.47100 * 4 3 2 15 15 O 1.21280 * 120.00100 * 174.95440 * 14 4 3 16 16 C 1.50704 * 119.99915 * 355.23149 * 14 4 3 17 17 C 1.53008 * 115.54666 * 291.67291 * 16 14 4 18 18 N 1.46898 * 109.46972 * 306.26353 * 17 16 14 19 19 C 1.46895 * 110.99748 * 165.26983 * 18 17 16 20 20 C 1.46905 * 110.99894 * 289.22254 * 18 17 16 21 21 C 1.52996 * 117.49863 * 146.00276 * 16 14 4 22 22 C 1.52998 * 117.49926 * 77.34179 * 16 14 4 23 23 H 1.08002 * 119.99974 * 5.03677 * 1 2 3 24 24 H 1.07998 * 120.00189 * 185.03404 * 1 2 3 25 25 H 1.08002 * 120.00124 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46857 * 6.13979 * 3 2 1 27 27 H 1.09001 * 109.47278 * 246.13850 * 3 2 1 28 28 H 1.09002 * 109.47323 * 29.99947 * 5 4 3 29 29 H 1.09004 * 109.47108 * 150.00321 * 5 4 3 30 30 H 0.97009 * 119.99281 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47205 * 66.26484 * 17 16 14 32 32 H 1.08998 * 109.46723 * 186.26838 * 17 16 14 33 33 H 1.08996 * 109.47550 * 60.00142 * 19 18 17 34 34 H 1.09003 * 109.47256 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47035 * 299.99770 * 19 18 17 36 36 H 1.08994 * 109.47134 * 64.58521 * 20 18 17 37 37 H 1.09006 * 109.46664 * 184.58145 * 20 18 17 38 38 H 1.09004 * 109.47020 * 304.57663 * 20 18 17 39 39 H 1.09000 * 117.50092 * 359.97438 * 21 16 14 40 40 H 1.09001 * 117.49831 * 145.02559 * 21 16 14 41 41 H 1.09001 * 117.49806 * 214.98043 * 22 16 14 42 42 H 1.09004 * 117.49699 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0132 1.3206 1.1154 5 6 2.5585 1.6855 2.4595 6 6 2.6977 3.1739 2.6500 7 1 3.0857 3.7868 1.8500 8 6 2.3289 3.7534 3.8455 9 7 1.8559 3.0070 4.8197 10 14 2.5021 5.5982 4.0821 11 1 1.2496 6.2718 3.6545 12 1 2.7577 5.8917 5.5151 13 1 3.6367 6.0977 3.2644 14 6 4.3050 0.9993 0.9052 15 8 5.1095 1.1002 1.8072 16 6 4.7511 0.5205 -0.4523 17 6 4.2245 -0.8530 -0.8735 18 7 4.5451 -1.8401 0.1661 19 6 3.7701 -3.0737 -0.0225 20 6 5.9862 -2.1233 0.1967 21 6 6.1580 0.9088 -0.9112 22 6 4.9345 1.5730 -1.5475 23 1 -0.5400 0.9317 -0.0821 24 1 -0.5400 -0.9317 0.0821 25 1 1.8500 -0.9353 -0.0004 26 1 1.3604 2.1306 0.1099 27 1 2.6053 1.4119 -0.9398 28 1 1.5134 1.4001 2.5795 29 1 3.1646 1.1659 3.2016 30 1 1.5968 3.4147 5.6610 31 1 3.1438 -0.8027 -1.0060 32 1 4.6924 -1.1491 -1.8123 33 1 4.0029 -3.5038 -0.9965 34 1 4.0270 -3.7874 0.7603 35 1 2.7054 -2.8453 0.0288 36 1 6.5273 -1.2228 0.4871 37 1 6.1855 -2.9155 0.9184 38 1 6.3150 -2.4418 -0.7926 39 1 6.7609 1.5109 -0.2314 40 1 6.7084 0.1860 -1.5135 41 1 4.6804 1.2869 -2.5681 42 1 4.7321 2.6118 -1.2862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602152863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:45 Heat of formation + Delta-G solvation = 3.779547 kcal Electronic energy + Delta-G solvation = -21606.079613 eV Core-core repulsion = 18587.258489 eV Total energy + Delta-G solvation = -3018.821124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29761 -38.58081 -37.24611 -36.57514 -35.05177 -33.61130 -29.90121 -28.75475 -28.43856 -26.90293 -25.63459 -23.44814 -23.34280 -22.40533 -21.11730 -19.28862 -18.56888 -17.78361 -17.34350 -16.51311 -16.44923 -16.05999 -15.79988 -15.69670 -15.30700 -14.92085 -14.52614 -14.19088 -14.07393 -13.41202 -13.28040 -13.23407 -12.96889 -12.90259 -12.80429 -12.75358 -12.57504 -12.52851 -12.41952 -12.23779 -12.06878 -11.67731 -11.33855 -10.92289 -10.63336 -10.42664 -10.21065 -9.38752 -9.17951 -8.20833 -6.35916 1.33986 1.35608 1.38540 1.48906 1.94180 2.33359 2.49380 2.73903 3.07847 3.14141 3.70454 3.77433 3.87356 4.05093 4.19073 4.25245 4.31676 4.43299 4.49151 4.57977 4.58977 4.70266 4.76084 4.77847 4.84354 4.90500 4.97624 4.99578 5.08690 5.10058 5.16496 5.22109 5.26473 5.56334 5.74982 5.79471 6.01950 6.09403 6.13785 6.19519 6.72266 6.89777 7.30449 7.61373 8.86173 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.006366 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.526344 B = 4397.504909 C = 4827.893232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.186 4.186 3 C 0.136 3.864 4 N -0.593 5.593 5 C 0.271 3.729 6 C -0.540 4.540 7 H 0.051 0.949 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.274 1.274 14 C 0.551 3.449 15 O -0.599 6.599 16 C -0.158 4.158 17 C 0.096 3.904 18 N -0.575 5.575 19 C 0.029 3.971 20 C 0.032 3.968 21 C -0.146 4.146 22 C -0.141 4.141 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.018 0.982 29 H -0.012 1.012 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 -9.472 -18.188 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.204 4.204 3 C 0.013 3.987 4 N -0.322 5.322 5 C 0.150 3.850 6 C -0.579 4.579 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.340 3.660 15 O -0.480 6.480 16 C -0.162 4.162 17 C -0.032 4.032 18 N -0.300 5.300 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.184 4.184 22 C -0.179 4.179 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.036 0.964 29 H 0.006 0.994 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.161 0.839 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.683 -9.216 -17.068 19.470 hybrid contribution 0.288 0.573 0.424 0.769 sum 1.971 -8.643 -16.644 18.858 Atomic orbital electron populations 1.24029 0.95466 1.02877 0.98503 1.23488 0.96704 0.98513 1.01731 1.20748 0.92186 0.95955 0.89762 1.48006 1.08357 1.65720 1.10098 1.18568 0.93162 0.94054 0.79221 1.21699 1.42725 0.93630 0.99855 0.93083 1.25878 0.94568 1.03562 0.95212 1.70074 1.44108 1.37521 1.05168 0.85414 0.78900 0.79080 0.77393 1.18584 1.20572 1.19876 1.19958 0.81444 0.75440 0.89136 1.90595 1.53865 1.56113 1.47378 1.21378 1.03500 0.98471 0.92833 1.21844 1.02004 0.86979 0.92327 1.61711 1.07463 1.12004 1.48774 1.22380 0.98202 0.90562 1.00737 1.22341 0.87530 1.01144 1.00621 1.23049 0.89830 1.03331 1.02174 1.23244 1.00601 0.96390 0.97650 0.88278 0.86637 0.86501 0.91179 0.87648 0.96433 0.99353 0.92457 0.88509 0.91158 0.93726 0.91479 0.91522 0.93013 0.91796 0.93563 0.90832 0.85417 0.83863 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 14.31 67.78 0.97 -3.34 16 2 C -0.19 -5.32 8.60 25.65 0.22 -5.10 16 3 C 0.14 4.57 5.37 85.63 0.46 5.03 16 4 N -0.59 -26.89 2.45 -830.50 -2.03 -28.92 16 5 C 0.27 15.55 5.13 85.63 0.44 15.99 16 6 C -0.54 -32.59 9.39 25.60 0.24 -32.35 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 10 Si 0.97 46.34 29.54 68.60 2.03 48.37 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 14 C 0.55 24.70 6.57 87.66 0.58 25.27 16 15 O -0.60 -33.73 16.39 -3.03 -0.05 -33.78 16 16 C -0.16 -4.78 0.53 -52.93 -0.03 -4.81 16 17 C 0.10 2.29 4.46 86.31 0.39 2.68 16 18 N -0.58 -15.72 4.65 -948.83 -4.41 -20.13 16 19 C 0.03 0.60 9.54 127.69 1.22 1.81 16 20 C 0.03 0.79 9.21 127.69 1.18 1.96 16 21 C -0.15 -3.84 8.41 30.62 0.26 -3.58 16 22 C -0.14 -3.27 8.57 30.62 0.26 -3.01 16 23 H 0.10 2.45 7.86 -2.91 -0.02 2.43 16 24 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 25 H 0.12 3.22 4.92 -2.91 -0.01 3.20 16 26 H 0.07 2.48 7.79 -2.39 -0.02 2.47 16 27 H 0.11 2.86 5.39 -2.39 -0.01 2.85 16 28 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 29 H -0.01 -0.78 7.50 -2.38 -0.02 -0.80 16 30 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 31 H 0.10 2.20 3.90 -2.39 -0.01 2.19 16 32 H 0.07 1.25 7.93 -2.39 -0.02 1.23 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.38 8.07 -2.39 -0.02 1.36 16 35 H 0.07 1.37 6.94 -2.38 -0.02 1.35 16 36 H 0.05 1.55 6.64 -2.39 -0.02 1.54 16 37 H 0.06 1.53 8.04 -2.38 -0.02 1.51 16 38 H 0.05 0.88 8.03 -2.38 -0.02 0.86 16 39 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 40 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -78.73 339.05 3.44 -75.29 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.98 Total: 15.65 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.64 Total: 1.43 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -6.16 Total: -106.94 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.05 Total: -33.78 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -78.73 3.44 -75.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602152863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.066 kcal (2) G-P(sol) polarization free energy of solvation -78.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds