Wall clock time and date at job start Mon Mar 30 2020 01:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00346 * 2 1 4 4 C 1.53000 * 109.47132 * 293.95413 * 3 2 1 5 5 N 1.46497 * 109.47200 * 179.97438 * 4 3 2 6 6 C 1.46770 * 124.34854 * 269.72626 * 5 4 3 7 7 C 1.54657 * 105.38060 * 162.85122 * 6 5 4 8 8 C 1.54628 * 101.68457 * 25.76832 * 7 6 5 9 9 C 1.34417 * 124.35147 * 90.02482 * 5 4 3 10 10 O 1.21283 * 124.93798 * 0.42913 * 9 5 4 11 11 C 1.46903 * 110.99809 * 123.95641 * 2 1 3 12 12 C 1.52999 * 109.47344 * 71.45874 * 11 2 1 13 13 C 1.50698 * 115.55522 * 54.03987 * 12 11 2 14 14 H 1.08002 * 119.99905 * 215.59949 * 13 12 11 15 15 C 1.37874 * 119.99619 * 35.31678 * 13 12 11 16 16 N 1.31517 * 120.00412 * 355.67501 * 15 13 12 17 17 Si 1.86807 * 120.00099 * 175.67207 * 15 13 12 18 18 H 1.48504 * 109.46670 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47192 * 120.00236 * 17 15 13 20 20 H 1.48494 * 109.47303 * 240.00639 * 17 15 13 21 21 C 1.53005 * 117.49794 * 199.71679 * 12 11 2 22 22 C 1.53000 * 117.49385 * 268.37336 * 12 11 2 23 23 H 1.09000 * 109.47459 * 301.01659 * 1 2 3 24 24 H 1.09005 * 109.47231 * 61.01706 * 1 2 3 25 25 H 1.09007 * 109.47442 * 181.01442 * 1 2 3 26 26 H 1.09004 * 109.46746 * 53.95095 * 3 2 1 27 27 H 1.09001 * 109.47387 * 173.95289 * 3 2 1 28 28 H 1.08996 * 109.47274 * 300.00316 * 4 3 2 29 29 H 1.09006 * 109.46830 * 60.00111 * 4 3 2 30 30 H 1.08993 * 110.24455 * 281.98398 * 6 5 4 31 31 H 1.09004 * 110.24356 * 43.98601 * 6 5 4 32 32 H 1.08991 * 111.19717 * 267.59632 * 7 6 5 33 33 H 1.09002 * 110.81722 * 143.77174 * 7 6 5 34 34 H 1.08994 * 110.49084 * 216.30376 * 8 7 6 35 35 H 1.09008 * 110.59869 * 93.71679 * 8 7 6 36 36 H 1.08990 * 109.47036 * 311.45029 * 11 2 1 37 37 H 1.09005 * 109.46766 * 191.45515 * 11 2 1 38 38 H 0.96996 * 120.00074 * 184.99747 * 16 15 13 39 39 H 1.08998 * 117.49426 * 214.99815 * 21 12 11 40 40 H 1.08996 * 117.49731 * 0.02562 * 21 12 11 41 41 H 1.09001 * 117.50479 * 359.97327 * 22 12 11 42 42 H 1.09003 * 117.50139 * 144.97084 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1561 3.4253 -1.3180 6 6 1.4163 4.5958 -0.8314 7 6 2.4831 5.6944 -0.6153 8 6 3.5860 5.2597 -1.6081 9 6 3.3745 3.7704 -1.7687 10 8 4.1860 3.0000 -2.2365 11 6 1.9954 -0.7661 1.1376 12 6 1.7499 -2.2582 0.9050 13 6 2.2709 -2.8074 -0.3980 14 1 1.7212 -3.5784 -0.9175 15 6 3.4464 -2.3214 -0.9300 16 7 4.0686 -1.3208 -0.3457 17 14 4.1556 -3.0843 -2.4807 18 1 3.2717 -4.1860 -2.9391 19 1 4.2491 -2.0507 -3.5428 20 1 5.5094 -3.6225 -2.1931 21 6 1.7894 -3.1794 2.1260 22 6 0.4526 -2.8547 1.4546 23 1 -0.3634 0.5295 0.8807 24 1 -0.3634 0.4980 -0.8990 25 1 -0.3634 -1.0275 0.0182 26 1 1.5611 1.9273 0.8309 27 1 3.0798 1.3443 0.1083 28 1 2.0657 1.5015 -2.1492 29 1 0.5472 2.0845 -1.4264 30 1 0.6861 4.9161 -1.5744 31 1 0.9199 4.3632 0.1108 32 1 2.8553 5.6863 0.4091 33 1 2.0872 6.6757 -0.8773 34 1 4.5736 5.4623 -1.1939 35 1 3.4629 5.7678 -2.5646 36 1 1.4905 -0.4528 2.0513 37 1 3.0659 -0.5846 1.2335 38 1 4.8552 -0.9314 -0.7584 39 1 2.1923 -4.1825 1.9868 40 1 1.9898 -2.7223 3.0950 41 1 -0.2258 -2.1843 1.9823 42 1 -0.0243 -3.6441 0.8735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602787360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:29 Heat of formation + Delta-G solvation = -11.043085 kcal Electronic energy + Delta-G solvation = -21239.936142 eV Core-core repulsion = 18220.472261 eV Total energy + Delta-G solvation = -3019.463882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29540 -39.30224 -37.54126 -36.75485 -34.01390 -33.68481 -29.55929 -28.42779 -28.23675 -27.37115 -25.26549 -22.91110 -22.73593 -22.12595 -20.75354 -20.25858 -18.09185 -17.75912 -17.34330 -16.69166 -16.49725 -15.86287 -15.83672 -15.48410 -15.02418 -14.68784 -14.49355 -14.32833 -13.94593 -13.84717 -13.39371 -13.19720 -12.99700 -12.90909 -12.85485 -12.44903 -12.31071 -12.29371 -12.16889 -11.89224 -11.80502 -11.74087 -11.25168 -10.79912 -10.74516 -10.48399 -9.99355 -9.67806 -8.69320 -7.82136 -5.97255 1.39376 1.44620 1.52113 1.59233 2.07259 2.49784 3.12814 3.46143 3.50566 3.67043 3.77462 4.02601 4.08171 4.22292 4.27650 4.35770 4.46061 4.54808 4.62898 4.70430 4.72990 4.73945 4.78554 4.85816 4.91342 4.96552 5.01393 5.06525 5.10815 5.17745 5.23066 5.25465 5.46227 5.57395 5.63645 5.69602 6.08647 6.23803 6.46329 6.60565 6.77086 7.02843 7.20779 7.64147 9.07726 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.006221 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.538426 B = 4499.904419 C = 5484.543956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.518 5.518 3 C 0.069 3.931 4 C 0.141 3.859 5 N -0.620 5.620 6 C 0.093 3.907 7 C -0.116 4.116 8 C -0.145 4.145 9 C 0.489 3.511 10 O -0.594 6.594 11 C 0.124 3.876 12 C 0.032 3.968 13 C -0.483 4.483 14 H 0.041 0.959 15 C 0.048 3.952 16 N -0.879 5.879 17 Si 0.933 3.067 18 H -0.269 1.269 19 H -0.296 1.296 20 H -0.285 1.285 21 C -0.211 4.211 22 C -0.190 4.190 23 H 0.021 0.979 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.122 0.878 36 H -0.011 1.011 37 H 0.083 0.917 38 H 0.247 0.753 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 16.845 1.548 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.241 5.241 3 C -0.061 4.061 4 C 0.018 3.982 5 N -0.353 5.353 6 C -0.028 4.028 7 C -0.154 4.154 8 C -0.185 4.185 9 C 0.279 3.721 10 O -0.475 6.475 11 C -0.004 4.004 12 C 0.032 3.968 13 C -0.521 4.521 14 H 0.059 0.941 15 C -0.154 4.154 16 N -0.517 5.517 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.223 1.223 20 H -0.212 1.212 21 C -0.249 4.249 22 C -0.227 4.227 23 H 0.039 0.961 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.007 0.993 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.388 16.223 0.890 17.848 hybrid contribution 0.495 -0.641 -0.132 0.820 sum -6.893 15.583 0.757 17.056 Atomic orbital electron populations 1.22450 0.87917 1.01843 0.99671 1.61364 1.06736 1.10852 1.45120 1.22079 0.98867 0.89044 0.96065 1.21141 0.99399 0.80459 0.97198 1.48527 1.16576 1.08260 1.61915 1.22483 0.95434 0.83892 1.00986 1.22677 0.93483 0.99602 0.99618 1.22364 1.02774 0.89603 1.03767 1.22069 0.81131 0.92873 0.76064 1.90739 1.48821 1.59984 1.47936 1.21461 1.00313 0.91883 0.86713 1.19092 0.94803 0.90870 0.92074 1.20443 1.05617 1.20211 1.05819 0.94077 1.25275 0.96824 0.94939 0.98317 1.69924 1.19602 1.23732 1.38400 0.85900 0.78341 0.78285 0.81298 1.19356 1.22262 1.21175 1.23000 1.02326 1.01498 0.98090 1.22880 0.90699 1.03967 1.05147 0.96059 0.91175 0.92002 0.95224 0.94422 0.93512 0.88109 0.88784 0.89448 0.89630 0.85505 0.87849 0.85951 0.99293 0.89881 0.94343 0.91191 0.90667 0.89739 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 9.08 127.69 1.16 2.20 16 2 N -0.52 -22.70 4.06 -922.45 -3.74 -26.45 16 3 C 0.07 2.73 5.28 86.30 0.46 3.18 16 4 C 0.14 4.85 5.86 86.38 0.51 5.36 16 5 N -0.62 -17.65 2.93 -817.63 -2.40 -20.05 16 6 C 0.09 1.47 7.36 86.89 0.64 2.11 16 7 C -0.12 -1.32 7.19 31.71 0.23 -1.09 16 8 C -0.15 -2.70 6.86 30.59 0.21 -2.49 16 9 C 0.49 16.10 8.02 87.90 0.70 16.80 16 10 O -0.59 -27.49 17.59 -3.04 -0.05 -27.54 16 11 C 0.12 5.94 3.90 86.30 0.34 6.28 16 12 C 0.03 1.61 1.65 -52.93 -0.09 1.52 16 13 C -0.48 -27.00 8.74 25.60 0.22 -26.78 16 14 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 15 C 0.05 2.72 5.31 84.65 0.45 3.17 16 16 N -0.88 -51.41 10.10 21.45 0.22 -51.19 16 17 Si 0.93 46.91 29.54 68.60 2.03 48.94 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 C -0.21 -9.49 9.96 30.62 0.30 -9.19 16 22 C -0.19 -8.00 8.36 30.62 0.26 -7.75 16 23 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 2.16 6.52 -2.38 -0.02 2.15 16 25 H 0.06 2.36 6.02 -2.38 -0.01 2.35 16 26 H 0.03 1.04 8.12 -2.38 -0.02 1.02 16 27 H 0.04 1.81 7.87 -2.39 -0.02 1.79 16 28 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 29 H 0.10 2.81 6.57 -2.38 -0.02 2.79 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 36 H -0.01 -0.48 8.00 -2.39 -0.02 -0.50 16 37 H 0.08 4.57 5.62 -2.38 -0.01 4.56 16 38 H 0.25 14.60 8.32 -92.71 -0.77 13.83 16 39 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.08 3.18 8.06 -2.39 -0.02 3.16 16 42 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -73.02 335.37 2.41 -70.61 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.98 Total: 12.34 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.39 Total: -6.67 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -5.93 Total: -97.68 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -73.02 2.41 -70.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602787360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.565 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds