Wall clock time and date at job start Mon Mar 30 2020 00:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47270 * 2 1 4 4 C 1.47249 * 120.07583 * 89.99958 * 3 2 1 5 5 C 1.53109 * 108.40647 * 250.01096 * 4 3 2 6 6 C 1.51682 * 110.75729 * 274.41692 * 5 4 3 7 7 N 1.45752 * 113.93956 * 66.77058 * 6 5 4 8 8 C 1.46899 * 110.99851 * 167.26730 * 7 6 5 9 9 C 1.53003 * 109.47030 * 209.48907 * 8 7 6 10 10 C 1.50696 * 115.54720 * 67.65785 * 9 8 7 11 11 H 1.08006 * 119.99848 * 144.94835 * 10 9 8 12 12 C 1.37881 * 120.00472 * 324.94136 * 10 9 8 13 13 N 1.31511 * 119.99619 * 324.18291 * 12 10 9 14 14 Si 1.86798 * 119.99836 * 144.17145 * 12 10 9 15 15 H 1.48491 * 109.47540 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47004 * 120.00880 * 14 12 10 17 17 H 1.48499 * 109.47109 * 240.00292 * 14 12 10 18 18 C 1.52996 * 117.49945 * 281.98359 * 9 8 7 19 19 C 1.53002 * 117.49943 * 213.32553 * 9 8 7 20 20 C 1.46880 * 112.43274 * 292.27761 * 7 6 5 21 21 C 1.33611 * 120.08205 * 270.02113 * 3 2 1 22 22 O 1.21288 * 119.87927 * 0.49683 * 21 3 2 23 23 H 1.09001 * 109.47052 * 59.99934 * 1 2 3 24 24 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46968 * 300.00101 * 1 2 3 26 26 H 1.09002 * 109.47192 * 240.00353 * 2 1 3 27 27 H 1.08999 * 109.47092 * 120.00605 * 2 1 3 28 28 H 1.08999 * 109.68298 * 130.28113 * 4 3 2 29 29 H 1.09005 * 109.67840 * 9.74063 * 4 3 2 30 30 H 1.09007 * 109.21838 * 34.74579 * 5 4 3 31 31 H 1.08999 * 109.21928 * 154.08109 * 5 4 3 32 32 H 1.09000 * 108.58674 * 187.92308 * 6 5 4 33 33 H 1.08995 * 108.58771 * 305.75595 * 6 5 4 34 34 H 1.09007 * 109.47358 * 329.49048 * 8 7 6 35 35 H 1.09003 * 109.47165 * 89.48679 * 8 7 6 36 36 H 0.97000 * 119.99745 * 188.11215 * 13 12 10 37 37 H 1.08999 * 117.49552 * 0.02562 * 18 9 8 38 38 H 1.08998 * 117.49743 * 145.01627 * 18 9 8 39 39 H 1.09000 * 117.49995 * 214.97897 * 19 9 8 40 40 H 1.09005 * 117.49489 * 0.02562 * 19 9 8 41 41 H 1.09002 * 109.60261 * 205.54381 * 20 7 6 42 42 H 1.09000 * 109.60390 * 326.02102 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2643 2.0769 1.2742 5 6 1.2012 3.1656 1.4437 6 6 1.6226 4.4424 0.7416 7 7 1.6795 4.3278 -0.7103 8 6 1.7941 5.6507 -1.3386 9 6 1.1410 5.6166 -2.7218 10 6 -0.3558 5.4421 -2.7296 11 1 -0.9532 5.9364 -3.4814 12 6 -0.9627 4.6513 -1.7770 13 7 -0.3637 3.5620 -1.3480 14 14 -2.6356 5.1275 -1.0956 15 1 -3.0914 6.3865 -1.7375 16 1 -3.6121 4.0455 -1.3801 17 1 -2.5333 5.3286 0.3721 18 6 1.9332 4.9731 -3.8615 19 6 1.7557 6.4928 -3.8151 20 6 2.7565 3.4362 -1.1604 21 6 2.2412 2.0127 -1.1561 22 8 2.0298 1.4435 -2.2061 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2552 2.5307 1.2594 29 1 2.1975 1.3671 2.0988 30 1 0.2596 2.8168 1.0195 31 1 1.0620 3.3690 2.5055 32 1 0.9158 5.2308 1.0006 33 1 2.6095 4.7290 1.1046 34 1 1.2918 6.3927 -0.7178 35 1 2.8468 5.9147 -1.4402 36 1 -0.8369 2.9445 -0.7686 37 1 2.9196 4.5736 -3.6258 38 1 1.3718 4.4237 -4.6172 39 1 1.0776 6.9426 -4.5403 40 1 2.6258 7.0931 -3.5491 41 1 3.0614 3.7118 -2.1699 42 1 3.6069 3.5193 -0.4836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602816567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:27 Heat of formation + Delta-G solvation = 39.831500 kcal Electronic energy + Delta-G solvation = -22765.131369 eV Core-core repulsion = 19747.873575 eV Total energy + Delta-G solvation = -3017.257794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63358 -37.26167 -35.79522 -34.65629 -31.90931 -31.54885 -30.13409 -27.35469 -25.90168 -25.01736 -23.29497 -22.31297 -20.98289 -20.23904 -18.88587 -18.30182 -16.63055 -15.99970 -15.75262 -14.85059 -14.43031 -14.17298 -13.81526 -13.73266 -13.30134 -13.17950 -13.00690 -12.62334 -12.49754 -11.79956 -11.77468 -11.68258 -11.52813 -11.06231 -10.91480 -10.83293 -10.73559 -10.53213 -10.37932 -10.27104 -10.07855 -10.02058 -9.27948 -8.87156 -8.85376 -8.37229 -8.03929 -7.86365 -6.71932 -5.67567 -3.52466 3.38111 3.48017 3.50670 3.58244 3.76293 4.63180 4.82097 5.12403 5.21282 5.28931 5.35185 5.54554 5.62198 5.71802 5.78364 5.80110 5.83673 5.91021 5.96560 6.07243 6.13206 6.20759 6.27942 6.33820 6.42450 6.46135 6.55879 6.67559 6.75784 6.85356 6.86287 6.96250 7.19544 7.24087 7.43703 7.65181 8.07741 8.14607 8.18791 8.28481 8.76855 9.18439 9.21839 9.86221 11.17213 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.010110 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.077178 B = 2768.893359 C = 3333.893298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.614 5.614 4 C 0.119 3.881 5 C -0.137 4.137 6 C 0.068 3.932 7 N -0.448 5.448 8 C 0.111 3.889 9 C 0.075 3.925 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.105 3.895 13 N -0.736 5.736 14 Si 0.835 3.165 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.202 4.202 19 C -0.220 4.220 20 C 0.051 3.949 21 C 0.558 3.442 22 O -0.540 6.540 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.004 0.996 34 H 0.060 0.940 35 H 0.003 0.997 36 H 0.246 0.754 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -3.663 8.988 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.349 5.349 4 C -0.004 4.004 5 C -0.176 4.176 6 C -0.061 4.061 7 N -0.172 5.172 8 C -0.016 4.016 9 C 0.073 3.927 10 C -0.577 4.577 11 H 0.072 0.928 12 C -0.108 4.108 13 N -0.364 5.364 14 Si 0.662 3.338 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.213 1.213 18 C -0.240 4.240 19 C -0.259 4.259 20 C -0.080 4.080 21 C 0.346 3.654 22 O -0.414 6.414 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.022 0.978 34 H 0.079 0.921 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.846 -4.337 8.493 11.186 hybrid contribution -0.377 0.692 0.822 1.138 sum 5.468 -3.645 9.315 11.400 Atomic orbital electron populations 1.22118 0.96121 1.00792 1.03263 1.21233 0.94576 0.83070 1.01478 1.47833 1.67232 1.13535 1.06307 1.21675 0.98256 0.94763 0.85743 1.21879 1.01014 0.95705 0.99027 1.21544 0.97773 0.97114 0.89621 1.61266 1.41749 1.10492 1.03675 1.21723 0.94825 0.88562 0.96476 1.18786 0.93988 0.95086 0.84806 1.19868 0.88343 1.34195 1.15265 0.92799 1.24755 0.95118 0.94768 0.96196 1.70575 1.32826 1.05296 1.27705 0.87498 0.87691 0.79350 0.79283 1.20052 1.21876 1.21322 1.22981 1.00385 0.92626 1.07984 1.22949 1.02385 0.93484 1.07033 1.22411 0.91766 0.91643 1.02206 1.20218 0.75475 0.87371 0.82366 1.90610 1.51597 1.67786 1.31446 0.90851 0.93057 0.93109 0.90639 0.92092 0.91941 0.90900 0.89167 0.92048 0.91772 0.97848 0.92141 0.97863 0.94231 0.92497 0.90644 0.90893 0.92127 0.88097 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.12 1.80 6.12 -4.05 -0.02 1.77 16 3 N -0.61 -10.38 2.48 -173.06 -0.43 -10.81 16 4 C 0.12 1.63 5.95 -3.58 -0.02 1.61 16 5 C -0.14 -2.11 5.81 -27.34 -0.16 -2.27 16 6 C 0.07 1.19 4.68 -5.11 -0.02 1.17 16 7 N -0.45 -9.27 0.69 -237.47 -0.16 -9.43 16 8 C 0.11 2.41 4.60 -3.82 -0.02 2.39 16 9 C 0.07 1.82 2.04 -155.66 -0.32 1.50 16 10 C -0.54 -14.82 8.85 -34.44 -0.30 -15.13 16 11 H 0.05 1.55 8.02 -52.48 -0.42 1.13 16 12 C 0.11 2.77 4.76 -17.82 -0.08 2.69 16 13 N -0.74 -18.80 8.64 55.43 0.48 -18.32 16 14 Si 0.84 20.18 29.67 -169.99 -5.04 15.14 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.20 -4.81 9.18 -26.70 -0.25 -5.06 16 19 C -0.22 -4.91 9.92 -26.69 -0.26 -5.17 16 20 C 0.05 1.01 5.01 -4.65 -0.02 0.99 16 21 C 0.56 11.62 6.35 -11.16 -0.07 11.55 16 22 O -0.54 -13.43 16.64 5.55 0.09 -13.33 16 23 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.08 1.24 7.41 -51.93 -0.38 0.86 16 27 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 28 H 0.06 0.80 6.76 -51.93 -0.35 0.45 16 29 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 30 H 0.09 1.66 6.57 -51.93 -0.34 1.32 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.18 7.61 -51.93 -0.40 0.79 16 33 H 0.00 0.06 7.77 -51.93 -0.40 -0.35 16 34 H 0.06 1.30 7.47 -51.93 -0.39 0.91 16 35 H 0.00 0.07 7.81 -51.93 -0.41 -0.34 16 36 H 0.25 6.16 7.39 -40.82 -0.30 5.86 16 37 H 0.06 1.29 6.11 -51.93 -0.32 0.97 16 38 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.10 2.19 4.75 -51.93 -0.25 1.94 16 42 H 0.03 0.47 6.66 -51.93 -0.35 0.13 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -29.62 319.90 -8.29 -37.91 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.87 Total: 0.16 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.18 Total: -6.14 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.11 Total: -38.56 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.04 Total: 15.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.62 -8.29 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.742 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds