Wall clock time and date at job start Mon Mar 30 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47270 * 2 1 4 4 C 1.47249 * 120.07583 * 89.99958 * 3 2 1 5 5 C 1.53109 * 108.40647 * 250.01096 * 4 3 2 6 6 C 1.51682 * 110.75729 * 274.41692 * 5 4 3 7 7 N 1.45752 * 113.93956 * 66.77058 * 6 5 4 8 8 C 1.46899 * 110.99851 * 167.26730 * 7 6 5 9 9 C 1.53003 * 109.47030 * 209.48907 * 8 7 6 10 10 C 1.50696 * 115.54720 * 67.65785 * 9 8 7 11 11 H 1.08006 * 119.99848 * 144.94835 * 10 9 8 12 12 C 1.37881 * 120.00472 * 324.94136 * 10 9 8 13 13 N 1.31511 * 119.99619 * 324.18291 * 12 10 9 14 14 Si 1.86798 * 119.99836 * 144.17145 * 12 10 9 15 15 H 1.48491 * 109.47540 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47004 * 120.00880 * 14 12 10 17 17 H 1.48499 * 109.47109 * 240.00292 * 14 12 10 18 18 C 1.52996 * 117.49945 * 281.98359 * 9 8 7 19 19 C 1.53002 * 117.49943 * 213.32553 * 9 8 7 20 20 C 1.46880 * 112.43274 * 292.27761 * 7 6 5 21 21 C 1.33611 * 120.08205 * 270.02113 * 3 2 1 22 22 O 1.21288 * 119.87927 * 0.49683 * 21 3 2 23 23 H 1.09001 * 109.47052 * 59.99934 * 1 2 3 24 24 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46968 * 300.00101 * 1 2 3 26 26 H 1.09002 * 109.47192 * 240.00353 * 2 1 3 27 27 H 1.08999 * 109.47092 * 120.00605 * 2 1 3 28 28 H 1.08999 * 109.68298 * 130.28113 * 4 3 2 29 29 H 1.09005 * 109.67840 * 9.74063 * 4 3 2 30 30 H 1.09007 * 109.21838 * 34.74579 * 5 4 3 31 31 H 1.08999 * 109.21928 * 154.08109 * 5 4 3 32 32 H 1.09000 * 108.58674 * 187.92308 * 6 5 4 33 33 H 1.08995 * 108.58771 * 305.75595 * 6 5 4 34 34 H 1.09007 * 109.47358 * 329.49048 * 8 7 6 35 35 H 1.09003 * 109.47165 * 89.48679 * 8 7 6 36 36 H 0.97000 * 119.99745 * 188.11215 * 13 12 10 37 37 H 1.08999 * 117.49552 * 0.02562 * 18 9 8 38 38 H 1.08998 * 117.49743 * 145.01627 * 18 9 8 39 39 H 1.09000 * 117.49995 * 214.97897 * 19 9 8 40 40 H 1.09005 * 117.49489 * 0.02562 * 19 9 8 41 41 H 1.09002 * 109.60261 * 205.54381 * 20 7 6 42 42 H 1.09000 * 109.60390 * 326.02102 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2643 2.0769 1.2742 5 6 1.2012 3.1656 1.4437 6 6 1.6226 4.4424 0.7416 7 7 1.6795 4.3278 -0.7103 8 6 1.7941 5.6507 -1.3386 9 6 1.1410 5.6166 -2.7218 10 6 -0.3558 5.4421 -2.7296 11 1 -0.9532 5.9364 -3.4814 12 6 -0.9627 4.6513 -1.7770 13 7 -0.3637 3.5620 -1.3480 14 14 -2.6356 5.1275 -1.0956 15 1 -3.0914 6.3865 -1.7375 16 1 -3.6121 4.0455 -1.3801 17 1 -2.5333 5.3286 0.3721 18 6 1.9332 4.9731 -3.8615 19 6 1.7557 6.4928 -3.8151 20 6 2.7565 3.4362 -1.1604 21 6 2.2412 2.0127 -1.1561 22 8 2.0298 1.4435 -2.2061 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2552 2.5307 1.2594 29 1 2.1975 1.3671 2.0988 30 1 0.2596 2.8168 1.0195 31 1 1.0620 3.3690 2.5055 32 1 0.9158 5.2308 1.0006 33 1 2.6095 4.7290 1.1046 34 1 1.2918 6.3927 -0.7178 35 1 2.8468 5.9147 -1.4402 36 1 -0.8369 2.9445 -0.7686 37 1 2.9196 4.5736 -3.6258 38 1 1.3718 4.4237 -4.6172 39 1 1.0776 6.9426 -4.5403 40 1 2.6258 7.0931 -3.5491 41 1 3.0614 3.7118 -2.1699 42 1 3.6069 3.5193 -0.4836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602816567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:26 Heat of formation + Delta-G solvation = 24.064781 kcal Electronic energy + Delta-G solvation = -22765.815065 eV Core-core repulsion = 19747.873575 eV Total energy + Delta-G solvation = -3017.941490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09598 -38.95333 -37.35915 -36.18387 -33.93433 -32.86624 -31.52277 -28.94861 -27.39297 -26.82946 -24.78731 -23.62483 -22.82147 -21.59237 -20.77198 -19.70624 -18.12558 -17.82742 -17.20338 -16.52580 -16.15830 -15.77747 -15.46340 -15.25227 -14.80444 -14.53412 -14.52079 -14.11538 -13.83841 -13.53957 -13.24934 -13.19557 -12.93459 -12.78244 -12.71239 -12.55174 -12.27579 -12.05259 -12.04112 -11.87612 -11.64433 -11.53658 -11.14188 -10.75023 -10.52053 -10.22580 -9.78394 -9.40523 -8.36788 -7.63344 -5.58988 1.41417 1.49657 1.59509 1.97671 2.43800 2.63020 3.15772 3.36241 3.87250 3.92054 4.08644 4.15078 4.17970 4.34856 4.39459 4.49948 4.54789 4.60586 4.62228 4.65614 4.74578 4.78732 4.84043 4.88852 4.90352 5.02471 5.04820 5.15225 5.18638 5.19417 5.34078 5.44105 5.57198 5.63644 5.74138 5.94120 6.10079 6.55560 6.68542 6.73708 6.85389 7.14949 7.66493 7.79478 9.12390 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.010110 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.077178 B = 2768.893359 C = 3333.893298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.116 3.884 3 N -0.609 5.609 4 C 0.116 3.884 5 C -0.134 4.134 6 C 0.065 3.935 7 N -0.472 5.472 8 C 0.119 3.881 9 C 0.055 3.945 10 C -0.580 4.580 11 H 0.024 0.976 12 C 0.082 3.918 13 N -0.727 5.727 14 Si 0.884 3.116 15 H -0.288 1.288 16 H -0.299 1.299 17 H -0.273 1.273 18 C -0.206 4.206 19 C -0.202 4.202 20 C 0.055 3.945 21 C 0.551 3.449 22 O -0.596 6.596 23 H 0.021 0.979 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.022 0.978 36 H 0.246 0.754 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 -4.050 12.300 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.006 4.006 3 N -0.341 5.341 4 C -0.005 4.005 5 C -0.172 4.172 6 C -0.063 4.063 7 N -0.196 5.196 8 C -0.008 4.008 9 C 0.054 3.946 10 C -0.615 4.615 11 H 0.042 0.958 12 C -0.134 4.134 13 N -0.353 5.353 14 Si 0.711 3.289 15 H -0.214 1.214 16 H -0.226 1.226 17 H -0.199 1.199 18 C -0.244 4.244 19 C -0.240 4.240 20 C -0.076 4.076 21 C 0.339 3.661 22 O -0.476 6.476 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.164 -4.725 11.868 14.646 hybrid contribution -0.822 0.762 -0.202 1.138 sum 6.342 -3.964 11.666 13.858 Atomic orbital electron populations 1.22015 0.96594 1.01717 1.01035 1.21411 0.94088 0.82354 1.02764 1.47921 1.65528 1.14178 1.06505 1.21970 0.98394 0.95124 0.85047 1.21858 0.99845 0.95061 1.00477 1.21630 0.98937 0.98094 0.87681 1.60926 1.42845 1.10043 1.05823 1.21507 0.95415 0.89188 0.94682 1.18963 0.92837 0.95960 0.86823 1.19918 0.90138 1.35465 1.15983 0.95809 1.25052 0.97223 0.94742 0.96334 1.70677 1.33221 1.04679 1.26759 0.86766 0.84924 0.77967 0.79213 1.21410 1.22613 1.19878 1.22810 1.00525 0.93691 1.07327 1.22955 1.02807 0.92588 1.05620 1.22281 0.92640 0.91012 1.01711 1.20457 0.75155 0.87697 0.82752 1.90581 1.54224 1.69042 1.33715 0.95934 0.90636 0.92239 0.92698 0.87333 0.90264 0.86858 0.92417 0.88594 0.93183 0.95056 0.92416 0.95962 0.94263 0.91247 0.93956 0.91720 0.89034 0.90522 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 10.24 71.98 0.74 -3.87 16 2 C 0.12 3.23 6.12 86.38 0.53 3.76 16 3 N -0.61 -19.11 2.48 -820.47 -2.03 -21.14 16 4 C 0.12 2.63 5.95 86.27 0.51 3.15 16 5 C -0.13 -3.60 5.81 30.20 0.18 -3.42 16 6 C 0.06 2.07 4.68 86.09 0.40 2.47 16 7 N -0.47 -18.90 0.69 -905.20 -0.62 -19.52 16 8 C 0.12 5.04 4.60 86.30 0.40 5.44 16 9 C 0.06 2.74 2.04 -52.93 -0.11 2.63 16 10 C -0.58 -32.84 8.85 25.60 0.23 -32.61 16 11 H 0.02 1.44 8.02 -2.91 -0.02 1.42 16 12 C 0.08 4.37 4.76 84.66 0.40 4.77 16 13 N -0.73 -37.57 8.64 21.45 0.19 -37.38 16 14 Si 0.88 42.29 29.67 68.60 2.04 44.32 16 15 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 16 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C -0.21 -10.07 9.18 30.62 0.28 -9.79 16 19 C -0.20 -8.98 9.92 30.62 0.30 -8.68 16 20 C 0.05 2.10 5.01 85.78 0.43 2.53 16 21 C 0.55 22.64 6.35 88.06 0.56 23.20 16 22 O -0.60 -30.56 16.64 -3.06 -0.05 -30.61 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 26 H 0.05 1.77 7.41 -2.39 -0.02 1.75 16 27 H 0.11 2.02 7.88 -2.39 -0.02 2.00 16 28 H 0.08 1.59 6.76 -2.39 -0.02 1.58 16 29 H 0.11 1.72 7.79 -2.38 -0.02 1.70 16 30 H 0.06 1.98 6.57 -2.38 -0.02 1.96 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.73 7.61 -2.39 -0.02 1.71 16 33 H 0.03 0.84 7.77 -2.39 -0.02 0.82 16 34 H 0.06 2.42 7.47 -2.38 -0.02 2.40 16 35 H 0.02 0.84 7.81 -2.39 -0.02 0.83 16 36 H 0.25 12.43 7.39 -92.71 -0.68 11.75 16 37 H 0.07 3.18 6.11 -2.39 -0.01 3.17 16 38 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.94 8.14 -2.39 -0.02 2.93 16 40 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 41 H 0.08 3.31 4.75 -2.39 -0.01 3.30 16 42 H 0.06 1.90 6.66 -2.39 -0.02 1.88 16 Total: -1.00 -68.18 319.90 5.44 -62.74 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.07 Total: 12.02 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 4.85 Total: -10.42 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -2.47 Total: -78.05 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.04 Total: 44.32 kcal Total: -68.18 5.44 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.802 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds