Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46891 * 110.99908 * 2 1 4 4 C 1.52998 * 109.47301 * 71.78071 * 3 2 1 5 5 C 1.50691 * 115.55169 * 54.15127 * 4 3 2 6 6 H 1.08011 * 120.00038 * 266.84821 * 5 4 3 7 7 C 1.37875 * 120.00692 * 86.84560 * 5 4 3 8 8 N 1.31510 * 120.00685 * 178.94582 * 7 5 4 9 9 Si 1.86803 * 119.99450 * 358.94496 * 7 5 4 10 10 H 1.48498 * 109.47290 * 90.93620 * 9 7 5 11 11 H 1.48492 * 109.47287 * 210.93500 * 9 7 5 12 12 H 1.48498 * 109.47101 * 330.93713 * 9 7 5 13 13 C 1.53000 * 117.49740 * 268.47887 * 4 3 2 14 14 C 1.53005 * 117.49680 * 199.82151 * 4 3 2 15 15 C 1.46906 * 110.99834 * 236.04252 * 2 1 3 16 16 H 1.08999 * 109.72826 * 178.62410 * 15 2 1 17 17 C 1.53339 * 109.60226 * 299.03127 * 15 2 1 18 18 C 1.53084 * 108.40988 * 187.30433 * 17 15 2 19 19 C 1.50178 * 109.88920 * 311.08363 * 18 17 15 20 20 O 1.21274 * 118.24509 * 197.55993 * 19 18 17 21 21 N 1.33346 * 123.50577 * 17.58438 * 19 18 17 22 22 C 1.46501 * 117.94810 * 177.77801 * 21 19 18 23 23 C 1.45760 * 124.10984 * 357.79680 * 21 19 18 24 24 H 1.09002 * 109.47324 * 176.82460 * 1 2 3 25 25 H 1.09000 * 109.47506 * 296.83145 * 1 2 3 26 26 H 1.08999 * 109.46888 * 56.82836 * 1 2 3 27 27 H 1.09007 * 109.46846 * 191.78164 * 3 2 1 28 28 H 1.08999 * 109.47222 * 311.78012 * 3 2 1 29 29 H 0.96995 * 120.00111 * 180.02562 * 8 7 5 30 30 H 1.08998 * 117.49942 * 359.97438 * 13 4 3 31 31 H 1.08998 * 117.49794 * 145.02090 * 13 4 3 32 32 H 1.09000 * 117.49609 * 214.97606 * 14 4 3 33 33 H 1.09002 * 117.50310 * 359.97438 * 14 4 3 34 34 H 1.09008 * 109.67404 * 307.02092 * 17 15 2 35 35 H 1.08997 * 109.67667 * 67.55793 * 17 15 2 36 36 H 1.09004 * 109.40422 * 190.95469 * 18 17 15 37 37 H 1.08997 * 109.33524 * 71.17151 * 18 17 15 38 38 H 1.09000 * 109.47091 * 270.02203 * 22 21 19 39 39 H 1.09003 * 109.47239 * 30.01517 * 22 21 19 40 40 H 1.08999 * 109.47830 * 150.01917 * 22 21 19 41 41 H 1.09007 * 109.29845 * 258.74172 * 23 21 19 42 42 H 1.09000 * 109.13666 * 139.26162 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7572 2.0091 1.3701 5 6 2.2867 1.2339 2.5489 6 1 1.6445 0.5406 3.0718 7 6 3.5910 1.4095 2.9599 8 7 4.0471 0.7484 4.0013 9 14 4.7105 2.5864 2.0373 10 1 4.6190 3.9372 2.6473 11 1 6.1117 2.1014 2.1166 12 1 4.2906 2.6563 0.6147 13 6 0.4598 2.7958 1.5672 14 6 1.7947 3.5364 1.4546 15 6 1.9955 -0.7661 -1.1376 16 1 3.0849 -0.7322 -1.1314 17 6 1.5254 -2.2223 -1.0388 18 6 2.2332 -3.0337 -2.1269 19 6 2.1166 -2.3283 -3.4476 20 8 2.3273 -2.9642 -4.4585 21 7 1.7942 -1.0400 -3.5681 22 6 1.7633 -0.4630 -4.9143 23 6 1.4710 -0.1698 -2.4443 24 1 -0.3634 -1.0261 -0.0569 25 1 -0.3634 0.4638 0.9170 26 1 -0.3633 0.5623 -0.8602 27 1 3.0649 1.3500 -0.2098 28 1 1.4864 1.9559 -0.7663 29 1 4.9645 0.8722 4.2906 30 1 -0.2238 2.8593 0.7206 31 1 -0.0106 2.7528 2.5495 32 1 2.2020 3.9803 2.3629 33 1 1.9895 4.0868 0.5341 34 1 1.7793 -2.6242 -0.0578 35 1 0.4467 -2.2706 -1.1878 36 1 1.7732 -4.0191 -2.2009 37 1 3.2860 -3.1443 -1.8673 38 1 2.7471 -0.0640 -5.1613 39 1 1.4933 -1.2353 -5.6346 40 1 1.0266 0.3396 -4.9489 41 1 0.3892 -0.0531 -2.3786 42 1 1.9295 0.8061 -2.6047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602842373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = 7.935056 kcal Electronic energy + Delta-G solvation = -21502.281677 eV Core-core repulsion = 18483.640749 eV Total energy + Delta-G solvation = -3018.640928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61719 -38.39652 -36.59552 -34.89086 -33.11268 -31.97355 -28.69533 -27.54219 -26.99473 -25.47585 -24.78681 -23.17017 -21.63463 -20.77421 -18.91040 -18.42771 -16.64285 -16.56339 -16.19634 -15.92746 -15.02862 -14.90688 -14.43855 -14.20637 -14.01027 -13.38237 -13.32918 -13.20684 -12.79022 -12.64470 -12.39321 -12.23225 -11.86161 -11.72784 -11.55252 -11.31791 -11.10517 -11.01813 -10.65355 -10.45426 -10.39768 -10.02698 -9.68048 -9.56181 -9.01680 -8.79317 -8.50030 -8.45761 -7.69155 -6.00669 -3.99388 2.62866 2.96542 3.30940 3.40933 3.41578 4.16453 4.47867 4.58200 4.71049 4.75630 4.95093 5.08229 5.18108 5.22539 5.27949 5.34340 5.43345 5.49000 5.58920 5.68534 5.73569 5.75810 5.82344 5.92589 5.95888 6.09058 6.12516 6.19896 6.27401 6.29279 6.37561 6.42735 6.53892 6.70406 7.04059 7.12109 7.35520 7.55172 7.66094 7.85185 8.12569 8.61899 9.04918 9.62947 11.12109 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.005811 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.575722 B = 4817.335415 C = 5022.176654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.494 5.494 3 C 0.091 3.909 4 C 0.012 3.988 5 C -0.455 4.455 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.903 5.903 9 Si 0.877 3.123 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.262 1.262 13 C -0.184 4.184 14 C -0.204 4.204 15 C 0.071 3.929 16 H 0.090 0.910 17 C -0.116 4.116 18 C -0.132 4.132 19 C 0.516 3.484 20 O -0.564 6.564 21 N -0.602 5.602 22 C 0.077 3.923 23 C 0.076 3.924 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.015 0.985 27 H 0.069 0.931 28 H 0.011 0.989 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 -1.161 -12.627 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.215 5.215 3 C -0.037 4.037 4 C 0.011 3.989 5 C -0.493 4.493 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.209 1.209 11 H -0.224 1.224 12 H -0.187 1.187 13 C -0.221 4.221 14 C -0.242 4.242 15 C -0.039 4.039 16 H 0.108 0.892 17 C -0.154 4.154 18 C -0.172 4.172 19 C 0.305 3.695 20 O -0.444 6.444 21 N -0.335 5.335 22 C -0.067 4.067 23 C -0.049 4.049 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.033 0.967 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.640 -1.750 -12.550 13.870 hybrid contribution 0.463 1.366 -1.151 1.845 sum -5.178 -0.384 -13.701 14.652 Atomic orbital electron populations 1.22512 0.88163 1.00964 1.01017 1.62031 1.07140 1.14811 1.37536 1.21969 0.98935 0.86674 0.96091 1.19386 0.96563 0.88556 0.94408 1.20085 0.96801 1.22818 1.09570 0.90393 1.24910 0.97660 0.95566 0.94516 1.69881 1.16307 1.42464 1.25481 0.86929 0.79689 0.81384 0.81404 1.20853 1.22380 1.18718 1.22859 0.90669 1.07708 1.00865 1.22997 1.02547 0.97600 1.01087 1.22096 1.00690 0.94083 0.87010 0.89184 1.21756 1.00050 0.93846 0.99711 1.21650 1.04071 0.99962 0.91540 1.20314 0.75835 0.81374 0.91939 1.90678 1.51064 1.64348 1.38297 1.47201 1.68271 1.10114 1.07951 1.21686 1.01551 0.99083 0.84336 1.22415 1.01092 0.94270 0.87103 0.91968 0.90102 0.96693 0.91232 0.97121 0.92864 0.91430 0.89614 0.89408 0.91337 0.88788 0.91326 0.88080 0.87983 0.92741 0.90247 0.91502 0.91243 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.39 60.07 0.50 0.82 16 2 N -0.49 -8.35 4.39 -234.72 -1.03 -9.38 16 3 C 0.09 1.69 3.98 -3.83 -0.02 1.68 16 4 C 0.01 0.26 0.57 -155.66 -0.09 0.17 16 5 C -0.46 -11.96 9.10 -34.45 -0.31 -12.27 16 6 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 9 Si 0.88 21.09 24.95 -169.99 -4.24 16.85 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -5.87 5.54 56.52 0.31 -5.56 16 13 C -0.18 -3.46 8.54 -26.69 -0.23 -3.69 16 14 C -0.20 -4.12 7.63 -26.69 -0.20 -4.33 16 15 C 0.07 1.01 2.28 -67.58 -0.15 0.85 16 16 H 0.09 1.38 7.96 -51.93 -0.41 0.96 16 17 C -0.12 -1.42 4.89 -26.51 -0.13 -1.55 16 18 C -0.13 -1.56 6.03 -28.09 -0.17 -1.73 16 19 C 0.52 7.36 7.47 -11.87 -0.09 7.27 16 20 O -0.56 -9.78 16.18 5.56 0.09 -9.69 16 21 N -0.60 -7.74 3.21 -182.85 -0.59 -8.33 16 22 C 0.08 0.84 10.24 59.85 0.61 1.45 16 23 C 0.08 0.94 4.99 -4.48 -0.02 0.92 16 24 H 0.06 0.80 6.16 -51.93 -0.32 0.48 16 25 H 0.08 1.31 6.56 -51.93 -0.34 0.97 16 26 H 0.01 0.19 6.39 -51.93 -0.33 -0.14 16 27 H 0.07 1.39 6.12 -51.93 -0.32 1.08 16 28 H 0.01 0.18 7.32 -51.93 -0.38 -0.20 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.09 1.89 7.26 -51.93 -0.38 1.52 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.93 7.13 -51.93 -0.37 0.56 16 40 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 41 H 0.07 0.82 6.03 -51.93 -0.31 0.51 16 42 H 0.07 0.91 7.36 -51.93 -0.38 0.52 16 LS Contribution 318.39 15.07 4.80 4.80 Total: -1.00 -30.72 318.39 -7.51 -38.23 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.92 Total: 2.08 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.39 Total: -8.46 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.84 Total: -43.81 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.24 Total: 16.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.72 -7.51 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602842373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.164 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds