Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46891 * 110.99908 * 2 1 4 4 C 1.52998 * 109.47301 * 71.78071 * 3 2 1 5 5 C 1.50691 * 115.55169 * 54.15127 * 4 3 2 6 6 H 1.08011 * 120.00038 * 266.84821 * 5 4 3 7 7 C 1.37875 * 120.00692 * 86.84560 * 5 4 3 8 8 N 1.31510 * 120.00685 * 178.94582 * 7 5 4 9 9 Si 1.86803 * 119.99450 * 358.94496 * 7 5 4 10 10 H 1.48498 * 109.47290 * 90.93620 * 9 7 5 11 11 H 1.48492 * 109.47287 * 210.93500 * 9 7 5 12 12 H 1.48498 * 109.47101 * 330.93713 * 9 7 5 13 13 C 1.53000 * 117.49740 * 268.47887 * 4 3 2 14 14 C 1.53005 * 117.49680 * 199.82151 * 4 3 2 15 15 C 1.46906 * 110.99834 * 236.04252 * 2 1 3 16 16 H 1.08999 * 109.72826 * 178.62410 * 15 2 1 17 17 C 1.53339 * 109.60226 * 299.03127 * 15 2 1 18 18 C 1.53084 * 108.40988 * 187.30433 * 17 15 2 19 19 C 1.50178 * 109.88920 * 311.08363 * 18 17 15 20 20 O 1.21274 * 118.24509 * 197.55993 * 19 18 17 21 21 N 1.33346 * 123.50577 * 17.58438 * 19 18 17 22 22 C 1.46501 * 117.94810 * 177.77801 * 21 19 18 23 23 C 1.45760 * 124.10984 * 357.79680 * 21 19 18 24 24 H 1.09002 * 109.47324 * 176.82460 * 1 2 3 25 25 H 1.09000 * 109.47506 * 296.83145 * 1 2 3 26 26 H 1.08999 * 109.46888 * 56.82836 * 1 2 3 27 27 H 1.09007 * 109.46846 * 191.78164 * 3 2 1 28 28 H 1.08999 * 109.47222 * 311.78012 * 3 2 1 29 29 H 0.96995 * 120.00111 * 180.02562 * 8 7 5 30 30 H 1.08998 * 117.49942 * 359.97438 * 13 4 3 31 31 H 1.08998 * 117.49794 * 145.02090 * 13 4 3 32 32 H 1.09000 * 117.49609 * 214.97606 * 14 4 3 33 33 H 1.09002 * 117.50310 * 359.97438 * 14 4 3 34 34 H 1.09008 * 109.67404 * 307.02092 * 17 15 2 35 35 H 1.08997 * 109.67667 * 67.55793 * 17 15 2 36 36 H 1.09004 * 109.40422 * 190.95469 * 18 17 15 37 37 H 1.08997 * 109.33524 * 71.17151 * 18 17 15 38 38 H 1.09000 * 109.47091 * 270.02203 * 22 21 19 39 39 H 1.09003 * 109.47239 * 30.01517 * 22 21 19 40 40 H 1.08999 * 109.47830 * 150.01917 * 22 21 19 41 41 H 1.09007 * 109.29845 * 258.74172 * 23 21 19 42 42 H 1.09000 * 109.13666 * 139.26162 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7572 2.0091 1.3701 5 6 2.2867 1.2339 2.5489 6 1 1.6445 0.5406 3.0718 7 6 3.5910 1.4095 2.9599 8 7 4.0471 0.7484 4.0013 9 14 4.7105 2.5864 2.0373 10 1 4.6190 3.9372 2.6473 11 1 6.1117 2.1014 2.1166 12 1 4.2906 2.6563 0.6147 13 6 0.4598 2.7958 1.5672 14 6 1.7947 3.5364 1.4546 15 6 1.9955 -0.7661 -1.1376 16 1 3.0849 -0.7322 -1.1314 17 6 1.5254 -2.2223 -1.0388 18 6 2.2332 -3.0337 -2.1269 19 6 2.1166 -2.3283 -3.4476 20 8 2.3273 -2.9642 -4.4585 21 7 1.7942 -1.0400 -3.5681 22 6 1.7633 -0.4630 -4.9143 23 6 1.4710 -0.1698 -2.4443 24 1 -0.3634 -1.0261 -0.0569 25 1 -0.3634 0.4638 0.9170 26 1 -0.3633 0.5623 -0.8602 27 1 3.0649 1.3500 -0.2098 28 1 1.4864 1.9559 -0.7663 29 1 4.9645 0.8722 4.2906 30 1 -0.2238 2.8593 0.7206 31 1 -0.0106 2.7528 2.5495 32 1 2.2020 3.9803 2.3629 33 1 1.9895 4.0868 0.5341 34 1 1.7793 -2.6242 -0.0578 35 1 0.4467 -2.2706 -1.1878 36 1 1.7732 -4.0191 -2.2009 37 1 3.2860 -3.1443 -1.8673 38 1 2.7471 -0.0640 -5.1613 39 1 1.4933 -1.2353 -5.6346 40 1 1.0266 0.3396 -4.9489 41 1 0.3892 -0.0531 -2.3786 42 1 1.9295 0.8061 -2.6047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602842373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = -13.261903 kcal Electronic energy + Delta-G solvation = -21503.200846 eV Core-core repulsion = 18483.640749 eV Total energy + Delta-G solvation = -3019.560097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69022 -39.72339 -38.01151 -36.02748 -34.25330 -33.99474 -29.77338 -28.87206 -27.97875 -27.37228 -25.88018 -24.35622 -23.19122 -21.90315 -20.66866 -19.48133 -18.17303 -17.68920 -17.49138 -17.02945 -16.79560 -16.10518 -15.70055 -15.41416 -15.27969 -14.76333 -14.64360 -14.57257 -14.26834 -13.78099 -13.61295 -13.35459 -13.11510 -13.02281 -12.82849 -12.73799 -12.47638 -12.25661 -12.08308 -12.02766 -11.83114 -11.56699 -11.35326 -10.80920 -10.78975 -10.45476 -10.14930 -9.82256 -8.90193 -8.13464 -6.14493 1.40128 1.42761 1.52795 1.54979 1.99259 2.46715 2.92633 3.22819 3.41590 3.57933 3.70244 3.75120 4.05169 4.22659 4.28428 4.33823 4.36259 4.41352 4.49350 4.50786 4.54259 4.59514 4.62524 4.72965 4.85865 4.86686 4.89985 4.92097 4.98304 5.15473 5.18543 5.19721 5.31703 5.35758 5.47828 5.58389 5.84321 6.28172 6.33716 6.45561 6.54315 6.91821 7.06595 7.51096 9.03224 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.005811 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.575722 B = 4817.335415 C = 5022.176654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.523 5.523 3 C 0.100 3.900 4 C -0.014 4.014 5 C -0.440 4.440 6 H 0.030 0.970 7 C 0.014 3.986 8 N -0.959 5.959 9 Si 0.933 3.067 10 H -0.279 1.279 11 H -0.308 1.308 12 H -0.230 1.230 13 C -0.162 4.162 14 C -0.204 4.204 15 C 0.072 3.928 16 H 0.073 0.927 17 C -0.107 4.107 18 C -0.126 4.126 19 C 0.511 3.489 20 O -0.601 6.601 21 N -0.601 5.601 22 C 0.073 3.927 23 C 0.085 3.915 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.258 0.742 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 0.326 -15.224 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.027 4.027 4 C -0.015 4.015 5 C -0.479 4.479 6 H 0.048 0.952 7 C -0.181 4.181 8 N -0.600 5.600 9 Si 0.760 3.240 10 H -0.205 1.205 11 H -0.236 1.236 12 H -0.152 1.152 13 C -0.199 4.199 14 C -0.242 4.242 15 C -0.038 4.038 16 H 0.092 0.908 17 C -0.145 4.145 18 C -0.166 4.166 19 C 0.301 3.699 20 O -0.483 6.483 21 N -0.333 5.333 22 C -0.069 4.069 23 C -0.040 4.040 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.909 -0.231 -15.168 16.669 hybrid contribution 0.743 0.858 -0.272 1.167 sum -6.166 0.626 -15.440 16.637 Atomic orbital electron populations 1.22490 0.86722 1.02157 1.00970 1.61902 1.08667 1.14285 1.39623 1.21734 0.98485 0.87871 0.94660 1.19333 0.98989 0.89070 0.94124 1.20227 0.95828 1.21374 1.10434 0.95187 1.25696 0.99488 0.97539 0.95396 1.70052 1.16598 1.45341 1.28054 0.86005 0.76984 0.79033 0.81995 1.20497 1.23574 1.15242 1.22857 0.90302 1.05091 1.01642 1.23035 1.03103 0.96357 1.01655 1.22032 0.99795 0.94696 0.87264 0.90836 1.21673 1.00803 0.92828 0.99205 1.21630 1.04403 1.00318 0.90226 1.20654 0.75373 0.81809 0.92086 1.90664 1.52922 1.65237 1.39507 1.47283 1.67317 1.09787 1.08894 1.21818 1.02667 0.99407 0.83037 1.22333 1.01838 0.94045 0.85747 0.90606 0.92180 0.94179 0.92861 0.93960 0.93290 0.87789 0.91002 0.91442 0.88232 0.89940 0.90011 0.86707 0.87696 0.92344 0.91369 0.88796 0.89734 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 8.39 127.69 1.07 1.70 16 2 N -0.52 -16.56 4.39 -896.53 -3.93 -20.49 16 3 C 0.10 3.42 3.98 86.30 0.34 3.77 16 4 C -0.01 -0.57 0.57 -52.93 -0.03 -0.60 16 5 C -0.44 -23.58 9.10 25.60 0.23 -23.35 16 6 H 0.03 1.84 8.06 -2.90 -0.02 1.82 16 7 C 0.01 0.79 5.47 84.65 0.46 1.25 16 8 N -0.96 -59.49 13.96 21.45 0.30 -59.19 16 9 Si 0.93 43.43 24.95 68.60 1.71 45.14 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.23 -9.37 5.54 99.48 0.55 -8.82 16 13 C -0.16 -5.63 8.54 30.62 0.26 -5.37 16 14 C -0.20 -7.57 7.63 30.62 0.23 -7.33 16 15 C 0.07 1.86 2.28 45.00 0.10 1.97 16 16 H 0.07 2.15 7.96 -2.39 -0.02 2.13 16 17 C -0.11 -2.44 4.89 30.74 0.15 -2.29 16 18 C -0.13 -2.78 6.03 29.71 0.18 -2.60 16 19 C 0.51 13.66 7.47 87.72 0.66 14.32 16 20 O -0.60 -20.22 16.18 -3.01 -0.05 -20.26 16 21 N -0.60 -13.77 3.21 -851.61 -2.73 -16.50 16 22 C 0.07 1.40 10.24 127.77 1.31 2.70 16 23 C 0.08 1.79 4.99 86.49 0.43 2.22 16 24 H 0.08 1.75 6.16 -2.39 -0.01 1.73 16 25 H 0.06 1.82 6.56 -2.39 -0.02 1.81 16 26 H 0.04 0.85 6.39 -2.39 -0.02 0.83 16 27 H 0.05 1.98 6.12 -2.38 -0.01 1.96 16 28 H 0.04 1.19 7.32 -2.39 -0.02 1.17 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 2.78 7.26 -2.39 -0.02 2.76 16 33 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.08 1.65 6.70 -2.39 -0.02 1.63 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.48 7.13 -2.39 -0.02 1.46 16 40 H 0.09 1.27 8.01 -2.39 -0.02 1.25 16 41 H 0.08 1.58 6.03 -2.38 -0.01 1.56 16 42 H 0.08 1.63 7.36 -2.39 -0.02 1.61 16 Total: -1.00 -68.92 318.39 1.54 -67.39 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.84 Total: 17.53 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 5.40 Total: -13.61 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -6.37 Total: -96.18 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.71 Total: 45.14 kcal Total: -68.92 1.54 -67.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602842373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.127 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds