Wall clock time and date at job start Mon Mar 30 2020 01:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47902 * 110.99989 * 2 1 4 4 C 1.53988 * 107.05800 * 145.84577 * 3 2 1 5 5 C 1.54595 * 105.14167 * 358.76576 * 4 3 2 6 6 H 1.09007 * 110.71798 * 96.57981 * 5 4 3 7 7 C 1.50698 * 110.72910 * 219.68750 * 5 4 3 8 8 O 1.21282 * 119.99805 * 25.24166 * 7 5 4 9 9 N 1.34767 * 120.00350 * 205.24582 * 7 5 4 10 10 C 1.46509 * 120.00079 * 5.17429 * 9 7 5 11 11 C 1.50703 * 109.46880 * 270.00472 * 10 9 7 12 12 H 1.07992 * 120.00297 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99478 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00119 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99707 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47178 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47171 * 120.00093 * 15 13 11 18 18 H 1.48505 * 109.46876 * 240.00222 * 15 13 11 19 19 C 1.46501 * 120.00345 * 185.17405 * 9 7 5 20 20 C 1.52991 * 109.47330 * 269.37609 * 19 9 7 21 21 C 1.53003 * 117.50229 * 183.17508 * 20 19 9 22 22 C 1.53002 * 60.03224 * 252.50159 * 21 20 19 23 23 C 1.48529 * 110.99681 * 117.39223 * 2 1 3 24 24 H 1.09001 * 109.46678 * 59.87890 * 1 2 3 25 25 H 1.09001 * 109.47075 * 179.87715 * 1 2 3 26 26 H 1.08999 * 109.47089 * 299.88141 * 1 2 3 27 27 H 1.08998 * 109.91770 * 26.48477 * 3 2 1 28 28 H 1.09004 * 110.07743 * 265.28515 * 3 2 1 29 29 H 1.09010 * 110.30623 * 239.85684 * 4 3 2 30 30 H 1.08994 * 110.39747 * 117.73138 * 4 3 2 31 31 H 1.09001 * 109.46609 * 29.99962 * 10 9 7 32 32 H 1.08998 * 109.47314 * 150.00313 * 10 9 7 33 33 H 0.97002 * 119.99847 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47282 * 149.37165 * 19 9 7 35 35 H 1.09001 * 109.46692 * 29.37738 * 19 9 7 36 36 H 1.09004 * 115.56335 * 328.87150 * 20 19 9 37 37 H 1.08999 * 117.49216 * 0.02562 * 21 20 19 38 38 H 1.08996 * 117.49759 * 145.00001 * 21 20 19 39 39 H 1.08999 * 117.50043 * 107.50241 * 22 21 20 40 40 H 1.08998 * 117.49835 * 252.51538 * 22 21 20 41 41 H 1.09002 * 110.67139 * 81.84140 * 23 2 1 42 42 H 1.09006 * 110.67075 * 318.71118 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6532 0.6581 7 6 3.9512 -0.1301 2.7360 8 8 3.7516 0.8111 3.4744 9 7 4.6219 -1.2090 3.1856 10 6 4.9622 -2.2964 2.2646 11 6 3.8467 -3.3096 2.2496 12 1 2.9721 -3.1590 2.8649 13 6 3.9429 -4.4289 1.4504 14 7 5.0078 -4.6121 0.7007 15 14 2.5606 -5.6853 1.4324 16 1 1.4837 -5.2497 2.3574 17 1 2.0149 -5.8011 0.0562 18 1 3.0847 -7.0041 1.8697 19 6 5.0108 -1.2947 4.5955 20 6 6.4035 -0.6883 4.7781 21 6 7.0230 -0.7496 6.1758 22 6 6.5158 0.5836 5.6224 23 6 2.0013 -0.6380 1.2312 24 1 -0.3633 0.5157 -0.8889 25 1 -0.3633 -1.0277 -0.0022 26 1 -0.3633 0.5120 0.8910 27 1 1.2759 2.0562 0.4570 28 1 2.2118 1.7000 -1.0203 29 1 3.2137 2.0430 1.6766 30 1 4.1479 1.6460 0.2038 31 1 5.1000 -1.8929 1.2614 32 1 5.8842 -2.7758 2.5932 33 1 5.0756 -5.3998 0.1387 34 1 5.0259 -2.3396 4.9054 35 1 4.2927 -0.7455 5.2044 36 1 7.0750 -0.7870 3.9252 37 1 6.4385 -1.2223 6.9650 38 1 8.1020 -0.8890 6.2423 39 1 5.5975 0.9884 6.0477 40 1 7.2611 1.3211 5.3246 41 1 2.0041 -1.7234 1.1317 42 1 1.4237 -0.3321 2.1036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609257005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:49 Heat of formation + Delta-G solvation = -7.786623 kcal Electronic energy + Delta-G solvation = -21316.912333 eV Core-core repulsion = 18297.589662 eV Total energy + Delta-G solvation = -3019.322671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71378 -37.90341 -36.69486 -34.71625 -32.46710 -31.85869 -28.95779 -27.67483 -26.38056 -25.21594 -23.00292 -22.08422 -21.64515 -20.65533 -20.06932 -18.07600 -16.82622 -16.51378 -15.83552 -15.43412 -14.74872 -14.55273 -14.44033 -14.02381 -13.85467 -13.43463 -13.11797 -12.72678 -12.45067 -12.31682 -11.94877 -11.53959 -11.38249 -11.25290 -11.23798 -11.10331 -11.05274 -10.90273 -10.80971 -10.58624 -10.28215 -10.15208 -9.98796 -9.69262 -9.55910 -9.00728 -8.52734 -8.13429 -7.72284 -6.17088 -4.23746 3.22645 3.30942 3.32920 3.37693 3.80917 4.17225 4.32474 4.45091 4.99128 5.07046 5.14941 5.16925 5.23646 5.29621 5.39909 5.56945 5.58703 5.64785 5.76847 5.81464 5.85984 5.95359 5.97384 6.02625 6.15236 6.16086 6.24775 6.28716 6.30367 6.37859 6.54663 6.61488 6.65352 6.83225 7.15453 7.23247 7.30560 7.55199 7.77287 8.06622 8.35332 8.80496 9.03131 9.43667 10.89829 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.009189 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.950218 B = 3046.547057 C = 5077.092315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.520 5.520 3 C 0.038 3.962 4 C -0.122 4.122 5 C -0.105 4.105 6 H 0.111 0.889 7 C 0.525 3.475 8 O -0.573 6.573 9 N -0.590 5.590 10 C 0.236 3.764 11 C -0.534 4.534 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.284 1.284 19 C 0.151 3.849 20 C -0.159 4.159 21 C -0.182 4.182 22 C -0.173 4.173 23 C 0.058 3.942 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 7.900 2.325 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.244 5.244 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.126 4.126 6 H 0.129 0.871 7 C 0.313 3.687 8 O -0.454 6.454 9 N -0.319 5.319 10 C 0.116 3.884 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.210 1.210 19 C 0.027 3.973 20 C -0.178 4.178 21 C -0.219 4.219 22 C -0.210 4.210 23 C -0.070 4.070 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.719 7.941 2.094 8.391 hybrid contribution -0.896 -0.509 0.541 1.164 sum -2.615 7.432 2.635 8.308 Atomic orbital electron populations 1.22486 0.88339 1.02149 1.00141 1.64772 1.07664 1.14515 1.37468 1.22846 0.95920 0.90121 1.00115 1.22412 0.97228 0.96519 0.99894 1.22111 0.98612 0.97161 0.94763 0.87094 1.20240 0.77390 0.81821 0.89259 1.90557 1.59755 1.36411 1.58674 1.48186 1.53973 1.20109 1.09662 1.19499 0.96735 0.83796 0.88364 1.21465 1.04332 1.05620 1.25835 0.92082 1.24907 0.95829 0.97799 0.95041 1.69920 1.27667 1.28451 1.26641 0.86529 0.82194 0.81249 0.78055 1.19707 1.20713 1.20965 1.20834 0.92438 1.00670 0.83331 1.22785 0.99163 1.01377 0.94470 1.22904 1.00377 1.01488 0.97152 1.22938 1.02780 0.90923 1.04379 1.23147 0.92148 1.01688 0.90027 0.91684 0.91217 0.95719 0.94156 0.90665 0.89913 0.91205 0.94192 0.94613 0.92584 0.90038 0.91125 0.87906 0.88996 0.89208 0.88814 0.89597 0.87387 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.40 60.07 0.56 0.81 16 2 N -0.52 -8.67 5.55 -238.71 -1.33 -9.99 16 3 C 0.04 0.56 6.70 -2.76 -0.02 0.55 16 4 C -0.12 -1.99 6.45 -25.38 -0.16 -2.16 16 5 C -0.10 -1.99 2.86 -89.91 -0.26 -2.25 16 6 H 0.11 2.26 5.95 -51.93 -0.31 1.95 16 7 C 0.53 10.91 6.83 -10.99 -0.08 10.83 16 8 O -0.57 -12.71 15.27 5.56 0.08 -12.62 16 9 N -0.59 -12.28 2.46 -175.06 -0.43 -12.71 16 10 C 0.24 5.46 4.93 -5.19 -0.03 5.44 16 11 C -0.53 -13.36 8.41 -34.44 -0.29 -13.65 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -24.11 13.29 55.43 0.74 -23.37 16 15 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 C 0.15 2.80 5.66 -4.05 -0.02 2.78 16 20 C -0.16 -2.61 6.01 -90.58 -0.54 -3.16 16 21 C -0.18 -2.45 10.25 -26.73 -0.27 -2.72 16 22 C -0.17 -2.55 10.18 -26.69 -0.27 -2.82 16 23 C 0.06 1.08 5.99 -1.90 -0.01 1.07 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 27 H 0.04 0.56 7.73 -51.93 -0.40 0.16 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.43 6.83 -51.92 -0.35 1.07 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.97 5.93 -51.93 -0.31 0.66 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.08 1.50 8.08 -51.93 -0.42 1.08 16 35 H 0.07 1.33 7.22 -51.93 -0.38 0.95 16 36 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.11 2.25 7.14 -51.93 -0.37 1.88 16 42 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -27.59 338.66 -9.47 -37.05 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.13 Total: 4.93 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.49 Total: -3.64 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -1.02 Total: -46.07 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.59 -9.47 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609257005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.265 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds