Wall clock time and date at job start Mon Mar 30 2020 01:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.47902 * 110.99989 * 2 1 4 4 C 1.53988 * 107.05800 * 145.84577 * 3 2 1 5 5 C 1.54595 * 105.14167 * 358.76576 * 4 3 2 6 6 H 1.09007 * 110.71798 * 96.57981 * 5 4 3 7 7 C 1.50698 * 110.72910 * 219.68750 * 5 4 3 8 8 O 1.21282 * 119.99805 * 25.24166 * 7 5 4 9 9 N 1.34767 * 120.00350 * 205.24582 * 7 5 4 10 10 C 1.46509 * 120.00079 * 5.17429 * 9 7 5 11 11 C 1.50703 * 109.46880 * 270.00472 * 10 9 7 12 12 H 1.07992 * 120.00297 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99478 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00119 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99707 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47178 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47171 * 120.00093 * 15 13 11 18 18 H 1.48505 * 109.46876 * 240.00222 * 15 13 11 19 19 C 1.46501 * 120.00345 * 185.17405 * 9 7 5 20 20 C 1.52991 * 109.47330 * 269.37609 * 19 9 7 21 21 C 1.53003 * 117.50229 * 183.17508 * 20 19 9 22 22 C 1.53002 * 60.03224 * 252.50159 * 21 20 19 23 23 C 1.48529 * 110.99681 * 117.39223 * 2 1 3 24 24 H 1.09001 * 109.46678 * 59.87890 * 1 2 3 25 25 H 1.09001 * 109.47075 * 179.87715 * 1 2 3 26 26 H 1.08999 * 109.47089 * 299.88141 * 1 2 3 27 27 H 1.08998 * 109.91770 * 26.48477 * 3 2 1 28 28 H 1.09004 * 110.07743 * 265.28515 * 3 2 1 29 29 H 1.09010 * 110.30623 * 239.85684 * 4 3 2 30 30 H 1.08994 * 110.39747 * 117.73138 * 4 3 2 31 31 H 1.09001 * 109.46609 * 29.99962 * 10 9 7 32 32 H 1.08998 * 109.47314 * 150.00313 * 10 9 7 33 33 H 0.97002 * 119.99847 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47282 * 149.37165 * 19 9 7 35 35 H 1.09001 * 109.46692 * 29.37738 * 19 9 7 36 36 H 1.09004 * 115.56335 * 328.87150 * 20 19 9 37 37 H 1.08999 * 117.49216 * 0.02562 * 21 20 19 38 38 H 1.08996 * 117.49759 * 145.00001 * 21 20 19 39 39 H 1.08999 * 117.50043 * 107.50241 * 22 21 20 40 40 H 1.08998 * 117.49835 * 252.51538 * 22 21 20 41 41 H 1.09002 * 110.67139 * 81.84140 * 23 2 1 42 42 H 1.09006 * 110.67075 * 318.71118 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0929 1.3155 6 1 4.1140 -0.6532 0.6581 7 6 3.9512 -0.1301 2.7360 8 8 3.7516 0.8111 3.4744 9 7 4.6219 -1.2090 3.1856 10 6 4.9622 -2.2964 2.2646 11 6 3.8467 -3.3096 2.2496 12 1 2.9721 -3.1590 2.8649 13 6 3.9429 -4.4289 1.4504 14 7 5.0078 -4.6121 0.7007 15 14 2.5606 -5.6853 1.4324 16 1 1.4837 -5.2497 2.3574 17 1 2.0149 -5.8011 0.0562 18 1 3.0847 -7.0041 1.8697 19 6 5.0108 -1.2947 4.5955 20 6 6.4035 -0.6883 4.7781 21 6 7.0230 -0.7496 6.1758 22 6 6.5158 0.5836 5.6224 23 6 2.0013 -0.6380 1.2312 24 1 -0.3633 0.5157 -0.8889 25 1 -0.3633 -1.0277 -0.0022 26 1 -0.3633 0.5120 0.8910 27 1 1.2759 2.0562 0.4570 28 1 2.2118 1.7000 -1.0203 29 1 3.2137 2.0430 1.6766 30 1 4.1479 1.6460 0.2038 31 1 5.1000 -1.8929 1.2614 32 1 5.8842 -2.7758 2.5932 33 1 5.0756 -5.3998 0.1387 34 1 5.0259 -2.3396 4.9054 35 1 4.2927 -0.7455 5.2044 36 1 7.0750 -0.7870 3.9252 37 1 6.4385 -1.2223 6.9650 38 1 8.1020 -0.8890 6.2423 39 1 5.5975 0.9884 6.0477 40 1 7.2611 1.3211 5.3246 41 1 2.0041 -1.7234 1.1317 42 1 1.4237 -0.3321 2.1036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609257005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:49 Heat of formation + Delta-G solvation = -23.444237 kcal Electronic energy + Delta-G solvation = -21317.591298 eV Core-core repulsion = 18297.589662 eV Total energy + Delta-G solvation = -3020.001636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29314 -39.27652 -38.05616 -36.45242 -34.39825 -33.20921 -30.35651 -29.45087 -27.95512 -26.49828 -24.91480 -23.25645 -23.04861 -21.95108 -21.43766 -19.71960 -18.49778 -18.38894 -17.43219 -16.76408 -16.43929 -16.08557 -15.89719 -15.46472 -15.12883 -14.80287 -14.49573 -14.30624 -14.15685 -13.80089 -13.59747 -13.29244 -12.87848 -12.69162 -12.60607 -12.47797 -12.39636 -12.35791 -12.33211 -12.11181 -12.00556 -11.70204 -11.50543 -11.30600 -10.88500 -10.70398 -10.47573 -9.46693 -9.41887 -8.17150 -6.29742 1.41003 1.44628 1.53680 1.69711 2.23141 2.44577 2.93417 3.10202 3.16045 3.64421 3.74968 3.85151 3.86126 4.01872 4.13452 4.23242 4.25808 4.39599 4.45763 4.51482 4.58962 4.70233 4.73106 4.76182 4.81262 4.87366 4.91504 4.97436 4.99239 5.00811 5.15603 5.19866 5.26317 5.27565 5.31379 5.68363 5.83020 5.87226 6.07860 6.08729 6.57717 6.83810 7.30708 7.43415 8.89127 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.009189 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.950218 B = 3046.547057 C = 5077.092315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.042 3.958 4 C -0.116 4.116 5 C -0.107 4.107 6 H 0.094 0.906 7 C 0.522 3.478 8 O -0.587 6.587 9 N -0.593 5.593 10 C 0.253 3.747 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.025 3.975 14 N -0.919 5.919 15 Si 0.949 3.051 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.150 3.850 20 C -0.184 4.184 21 C -0.155 4.155 22 C -0.170 4.170 23 C 0.066 3.934 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 8.550 2.465 9.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.086 4.086 4 C -0.154 4.154 5 C -0.128 4.128 6 H 0.112 0.888 7 C 0.311 3.689 8 O -0.469 6.469 9 N -0.322 5.322 10 C 0.133 3.867 11 C -0.572 4.572 12 H 0.072 0.928 13 C -0.175 4.175 14 N -0.558 5.558 15 Si 0.775 3.225 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.206 1.206 19 C 0.027 3.973 20 C -0.203 4.203 21 C -0.192 4.192 22 C -0.207 4.207 23 C -0.062 4.062 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.332 8.600 2.249 9.190 hybrid contribution -0.701 -0.678 0.516 1.103 sum -3.032 7.922 2.765 8.922 Atomic orbital electron populations 1.22572 0.86520 1.02557 1.01562 1.64761 1.09529 1.15623 1.35901 1.22904 0.95169 0.89356 1.01150 1.22399 0.98939 0.94099 1.00011 1.22090 0.98358 0.99103 0.93283 0.88805 1.20540 0.77008 0.81429 0.89924 1.90537 1.60364 1.36732 1.59312 1.48186 1.54104 1.19569 1.10342 1.19116 0.95522 0.83916 0.88171 1.21576 1.04286 1.05980 1.25341 0.92825 1.25563 0.97716 0.99460 0.94790 1.70009 1.29215 1.29143 1.27435 0.85630 0.79744 0.79085 0.77999 1.19379 1.20484 1.20613 1.20909 0.93783 1.00643 0.81920 1.22621 0.97954 1.03738 0.96015 1.23022 1.01545 0.99759 0.94901 1.22966 1.02957 0.91157 1.03585 1.22907 0.92042 1.00284 0.90960 0.89236 0.91448 0.95191 0.92731 0.88541 0.90775 0.89721 0.95422 0.96209 0.92455 0.90441 0.91479 0.89176 0.87792 0.87224 0.89442 0.88452 0.90026 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.40 127.69 1.20 1.61 16 2 N -0.53 -17.09 5.55 -909.14 -5.05 -22.13 16 3 C 0.04 1.15 6.70 86.44 0.58 1.73 16 4 C -0.12 -3.67 6.45 31.47 0.20 -3.47 16 5 C -0.11 -4.10 2.86 -10.34 -0.03 -4.13 16 6 H 0.09 3.93 5.95 -2.38 -0.01 3.92 16 7 C 0.52 22.05 6.83 87.66 0.60 22.65 16 8 O -0.59 -26.16 15.27 -3.04 -0.05 -26.20 16 9 N -0.59 -25.31 2.46 -826.15 -2.03 -27.34 16 10 C 0.25 12.12 4.93 85.63 0.42 12.55 16 11 C -0.53 -27.20 8.41 25.60 0.22 -26.99 16 12 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 13 C 0.03 1.31 5.46 84.66 0.46 1.77 16 14 N -0.92 -50.44 13.29 21.45 0.28 -50.15 16 15 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 C 0.15 5.66 5.66 86.38 0.49 6.15 16 20 C -0.18 -6.01 6.01 -10.77 -0.06 -6.07 16 21 C -0.15 -3.87 10.25 30.60 0.31 -3.56 16 22 C -0.17 -4.78 10.18 30.62 0.31 -4.47 16 23 C 0.07 2.50 5.99 86.65 0.52 3.02 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.03 0.74 8.00 -2.39 -0.02 0.72 16 27 H 0.05 1.36 7.73 -2.39 -0.02 1.34 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.49 6.83 -2.38 -0.02 2.47 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.03 1.40 5.93 -2.39 -0.01 1.39 16 32 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 33 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.08 2.91 8.08 -2.39 -0.02 2.89 16 35 H 0.07 2.54 7.22 -2.39 -0.02 2.53 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.09 2.58 8.04 -2.39 -0.02 2.56 16 40 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.08 3.48 7.14 -2.39 -0.02 3.46 16 42 H 0.03 1.28 7.86 -2.38 -0.02 1.26 16 Total: -1.00 -58.50 338.66 1.38 -57.12 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.98 Total: 24.20 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.22 Total: 0.80 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -6.79 Total: -99.63 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -58.50 1.38 -57.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609257005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.671 kcal (2) G-P(sol) polarization free energy of solvation -58.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds