Wall clock time and date at job start Mon Mar 30 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.46983 * 2 1 4 4 C 1.46904 * 111.00178 * 72.29268 * 3 2 1 5 5 C 1.52998 * 109.47037 * 200.06413 * 4 3 2 6 6 H 1.09003 * 109.47492 * 302.69758 * 5 4 3 7 7 C 1.47202 * 109.47365 * 62.70048 * 5 4 3 8 8 N 4.62107 * 69.34771 * 354.45881 * 2 1 3 9 9 C 1.53002 * 109.47026 * 182.69767 * 5 4 3 10 10 C 1.50700 * 109.46928 * 175.00216 * 9 5 4 11 11 H 1.07998 * 120.00690 * 359.97438 * 10 9 5 12 12 C 1.37885 * 119.99720 * 180.02562 * 10 9 5 13 13 N 1.31508 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99875 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47157 * 60.00283 * 14 12 10 16 16 H 1.48501 * 109.46980 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47312 * 300.00068 * 14 12 10 18 18 C 1.46905 * 110.99924 * 196.24419 * 3 2 1 19 19 C 1.52997 * 109.46916 * 79.55527 * 18 3 2 20 20 H 1.08999 * 110.98914 * 56.86699 * 19 18 3 21 21 C 1.55451 * 111.14823 * 181.04297 * 19 18 3 22 22 C 1.54378 * 102.18624 * 151.99007 * 21 19 18 23 23 O 1.43231 * 107.66843 * 338.74258 * 22 21 19 24 24 C 1.43644 * 109.97308 * 358.24407 * 23 22 21 25 25 H 1.09006 * 109.47465 * 183.87974 * 1 2 3 26 26 H 1.09011 * 109.47345 * 303.87489 * 1 2 3 27 27 H 1.09001 * 109.47250 * 63.87566 * 1 2 3 28 28 H 1.08997 * 109.46822 * 240.00013 * 2 1 3 29 29 H 1.09004 * 109.47054 * 119.99740 * 2 1 3 30 30 H 1.08999 * 109.47267 * 320.06387 * 4 3 2 31 31 H 1.08995 * 109.46997 * 80.06617 * 4 3 2 32 32 H 1.08995 * 109.47155 * 294.99908 * 9 5 4 33 33 H 1.09001 * 109.47048 * 55.00195 * 9 5 4 34 34 H 0.97011 * 119.99978 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.47208 * 319.55393 * 18 3 2 36 36 H 1.08999 * 109.46884 * 199.55446 * 18 3 2 37 37 H 1.09006 * 110.83241 * 33.84819 * 21 19 18 38 38 H 1.08993 * 110.92579 * 270.18040 * 21 19 18 39 39 H 1.09004 * 109.82897 * 219.18358 * 22 21 19 40 40 H 1.08997 * 109.83088 * 98.30536 * 22 21 19 41 41 H 1.08998 * 110.31597 * 143.34221 * 24 23 22 42 42 H 1.09004 * 110.31258 * 265.51567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8018 2.0204 1.3065 5 6 1.8426 3.5415 1.1469 6 1 2.7972 3.8357 0.7106 7 6 0.7462 3.9719 0.2639 8 7 -0.0999 4.3039 -0.4175 9 6 1.6830 4.2025 2.5175 10 6 1.8456 5.6942 2.3777 11 1 2.0435 6.1274 1.4084 12 6 1.7428 6.5058 3.4876 13 7 1.5023 5.9783 4.6680 14 14 1.9452 8.3548 3.3145 15 1 0.9109 8.8814 2.3880 16 1 1.7901 8.9963 4.6448 17 1 3.2946 8.6566 2.7731 18 6 3.4365 1.4424 -0.3836 19 6 3.5577 1.3345 -1.9050 20 1 2.9833 2.1182 -2.3990 21 6 5.0460 1.3649 -2.3526 22 6 5.0080 0.5544 -3.6659 23 8 3.8296 -0.2595 -3.6405 24 6 3.1286 -0.0693 -2.4012 25 1 -0.3634 -1.0253 0.0695 26 1 -0.3634 0.5728 0.8533 27 1 -0.3634 0.4525 -0.9227 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8293 1.7221 1.6980 31 1 2.5837 1.7066 1.9980 32 1 0.6925 3.9807 2.9147 33 1 2.4421 3.8164 3.1977 34 1 1.4304 6.5493 5.4489 35 1 3.9731 0.6165 0.0831 36 1 3.8648 2.3880 -0.0512 37 1 5.6829 0.8776 -1.6144 38 1 5.3762 2.3871 -2.5371 39 1 5.8929 -0.0783 -3.7358 40 1 4.9705 1.2328 -4.5182 41 1 2.0518 -0.0992 -2.5671 42 1 3.4223 -0.8317 -1.6795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609575023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:10 Heat of formation + Delta-G solvation = -27.501492 kcal Electronic energy + Delta-G solvation = -20643.661519 eV Core-core repulsion = 17623.483947 eV Total energy + Delta-G solvation = -3020.177572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86368 -38.06784 -35.83277 -33.70416 -32.96655 -31.98836 -30.26923 -29.44144 -26.77002 -25.16045 -23.66728 -22.21717 -21.68554 -20.90485 -20.62531 -17.16742 -16.59217 -16.51889 -16.11267 -15.22793 -15.19282 -14.74757 -14.48458 -14.29924 -13.67316 -13.60025 -13.22065 -12.87743 -12.62953 -12.41709 -12.00351 -11.88025 -11.82941 -11.73435 -11.48697 -11.25492 -11.15227 -11.05917 -10.88105 -10.76709 -10.72521 -10.61663 -10.47239 -10.11775 -9.65624 -9.52275 -9.24836 -8.46430 -8.24291 -6.10607 -4.13771 3.30122 3.34610 3.38301 3.66924 3.76290 3.85868 3.93228 4.38961 4.41700 4.69060 4.74057 4.91915 4.99584 5.03930 5.12142 5.21620 5.26361 5.27608 5.45418 5.51303 5.54750 5.56248 5.63015 5.65311 5.76890 5.80460 5.82569 5.83616 5.95705 6.08502 6.17219 6.30706 6.39813 6.50107 6.85520 7.15027 7.17527 7.41025 7.51916 7.84449 8.22309 8.61823 8.90796 9.51715 11.00247 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004464 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.880742 B = 6270.383416 C = 6839.704807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.034 3.966 3 N -0.542 5.542 4 C 0.060 3.940 5 C 0.013 3.987 6 H 0.097 0.903 7 C 0.258 3.742 8 N -0.481 5.481 9 C 0.031 3.969 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.062 3.938 19 C -0.114 4.114 20 H 0.095 0.905 21 C -0.153 4.153 22 C 0.051 3.949 23 O -0.390 6.390 24 C 0.054 3.946 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -13.770 -9.466 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 N -0.266 5.266 4 C -0.069 4.069 5 C -0.009 4.009 6 H 0.115 0.885 7 C -0.059 4.059 8 N -0.158 5.158 9 C -0.007 4.007 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.066 4.066 19 C -0.134 4.134 20 H 0.114 0.886 21 C -0.191 4.191 22 C -0.025 4.025 23 O -0.309 6.309 24 C -0.022 4.022 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.440 -13.107 -10.811 17.840 hybrid contribution 0.966 0.734 1.115 1.648 sum 6.406 -12.373 -9.696 16.975 Atomic orbital electron populations 1.21793 0.94934 1.01008 1.02933 1.22472 0.96443 0.89202 1.01232 1.61980 1.17330 1.17030 1.30240 1.22293 1.02327 0.93432 0.88836 1.19218 0.92293 0.93104 0.96319 0.88477 1.28817 0.93717 0.91299 0.92045 1.80979 1.11814 1.10735 1.12255 1.19165 0.98601 0.95304 0.87659 1.21098 1.49726 0.91495 0.94123 0.92588 1.24944 0.94887 0.98790 0.95262 1.69927 1.48723 1.35594 0.98813 0.86664 0.78831 0.85385 0.77261 1.20207 1.21186 1.20068 1.22074 0.88884 1.02109 0.93537 1.22890 0.95420 0.98219 0.96832 0.88628 1.23189 0.96971 1.01685 0.97226 1.23080 0.88320 0.93331 0.97781 1.88403 1.38050 1.66164 1.38322 1.23735 0.97241 0.95757 0.85431 0.92652 0.92315 0.92113 0.89844 0.94756 0.90043 0.92686 0.95627 0.94553 0.92746 0.94137 0.89574 0.90458 0.89677 0.91745 0.91442 0.89154 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.03 37.16 0.37 -1.33 16 2 C 0.03 0.37 5.34 -3.83 -0.02 0.35 16 3 N -0.54 -6.85 3.93 -234.63 -0.92 -7.78 16 4 C 0.06 0.86 4.17 -3.82 -0.02 0.84 16 5 C 0.01 0.23 2.25 -93.41 -0.21 0.02 16 6 H 0.10 1.65 6.75 -51.93 -0.35 1.30 16 7 C 0.26 5.34 13.61 -20.76 -0.28 5.06 16 8 N -0.48 -10.85 18.54 42.15 0.78 -10.07 16 9 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 10 C -0.53 -13.89 8.60 -34.44 -0.30 -14.18 16 11 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 14 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.06 0.68 4.53 -3.82 -0.02 0.66 16 19 C -0.11 -1.21 3.34 -88.29 -0.29 -1.50 16 20 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 21 C -0.15 -1.34 6.52 -24.71 -0.16 -1.50 16 22 C 0.05 0.49 7.79 37.88 0.30 0.78 16 23 O -0.39 -4.73 11.36 -35.23 -0.40 -5.13 16 24 C 0.05 0.57 5.30 38.19 0.20 0.78 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 6.46 -51.92 -0.34 0.41 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.82 3.42 -51.93 -0.18 0.64 16 29 H 0.03 0.35 8.05 -51.93 -0.42 -0.06 16 30 H 0.08 1.21 6.22 -51.93 -0.32 0.88 16 31 H 0.05 0.73 7.99 -51.93 -0.42 0.31 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.04 0.40 7.88 -51.93 -0.41 -0.01 16 36 H 0.09 0.98 6.47 -51.93 -0.34 0.64 16 37 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.99 7.17 -51.93 -0.37 0.62 16 42 H 0.06 0.57 7.10 -51.93 -0.37 0.20 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -30.13 335.90 -7.25 -37.38 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -6.84 Total: -3.21 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.65 Total: -7.80 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.60 Total: -42.46 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.40 Total: -5.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.13 -7.25 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.874 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds