Wall clock time and date at job start Mon Mar 30 2020 00:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.46983 * 2 1 4 4 C 1.46904 * 111.00178 * 72.29268 * 3 2 1 5 5 C 1.52998 * 109.47037 * 200.06413 * 4 3 2 6 6 H 1.09003 * 109.47492 * 302.69758 * 5 4 3 7 7 C 1.47202 * 109.47365 * 62.70048 * 5 4 3 8 8 N 4.62107 * 69.34771 * 354.45881 * 2 1 3 9 9 C 1.53002 * 109.47026 * 182.69767 * 5 4 3 10 10 C 1.50700 * 109.46928 * 175.00216 * 9 5 4 11 11 H 1.07998 * 120.00690 * 359.97438 * 10 9 5 12 12 C 1.37885 * 119.99720 * 180.02562 * 10 9 5 13 13 N 1.31508 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99875 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47157 * 60.00283 * 14 12 10 16 16 H 1.48501 * 109.46980 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47312 * 300.00068 * 14 12 10 18 18 C 1.46905 * 110.99924 * 196.24419 * 3 2 1 19 19 C 1.52997 * 109.46916 * 79.55527 * 18 3 2 20 20 H 1.08999 * 110.98914 * 56.86699 * 19 18 3 21 21 C 1.55451 * 111.14823 * 181.04297 * 19 18 3 22 22 C 1.54378 * 102.18624 * 151.99007 * 21 19 18 23 23 O 1.43231 * 107.66843 * 338.74258 * 22 21 19 24 24 C 1.43644 * 109.97308 * 358.24407 * 23 22 21 25 25 H 1.09006 * 109.47465 * 183.87974 * 1 2 3 26 26 H 1.09011 * 109.47345 * 303.87489 * 1 2 3 27 27 H 1.09001 * 109.47250 * 63.87566 * 1 2 3 28 28 H 1.08997 * 109.46822 * 240.00013 * 2 1 3 29 29 H 1.09004 * 109.47054 * 119.99740 * 2 1 3 30 30 H 1.08999 * 109.47267 * 320.06387 * 4 3 2 31 31 H 1.08995 * 109.46997 * 80.06617 * 4 3 2 32 32 H 1.08995 * 109.47155 * 294.99908 * 9 5 4 33 33 H 1.09001 * 109.47048 * 55.00195 * 9 5 4 34 34 H 0.97011 * 119.99978 * 179.97438 * 13 12 10 35 35 H 1.08995 * 109.47208 * 319.55393 * 18 3 2 36 36 H 1.08999 * 109.46884 * 199.55446 * 18 3 2 37 37 H 1.09006 * 110.83241 * 33.84819 * 21 19 18 38 38 H 1.08993 * 110.92579 * 270.18040 * 21 19 18 39 39 H 1.09004 * 109.82897 * 219.18358 * 22 21 19 40 40 H 1.08997 * 109.83088 * 98.30536 * 22 21 19 41 41 H 1.08998 * 110.31597 * 143.34221 * 24 23 22 42 42 H 1.09004 * 110.31258 * 265.51567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8018 2.0204 1.3065 5 6 1.8426 3.5415 1.1469 6 1 2.7972 3.8357 0.7106 7 6 0.7462 3.9719 0.2639 8 7 -0.0999 4.3039 -0.4175 9 6 1.6830 4.2025 2.5175 10 6 1.8456 5.6942 2.3777 11 1 2.0435 6.1274 1.4084 12 6 1.7428 6.5058 3.4876 13 7 1.5023 5.9783 4.6680 14 14 1.9452 8.3548 3.3145 15 1 0.9109 8.8814 2.3880 16 1 1.7901 8.9963 4.6448 17 1 3.2946 8.6566 2.7731 18 6 3.4365 1.4424 -0.3836 19 6 3.5577 1.3345 -1.9050 20 1 2.9833 2.1182 -2.3990 21 6 5.0460 1.3649 -2.3526 22 6 5.0080 0.5544 -3.6659 23 8 3.8296 -0.2595 -3.6405 24 6 3.1286 -0.0693 -2.4012 25 1 -0.3634 -1.0253 0.0695 26 1 -0.3634 0.5728 0.8533 27 1 -0.3634 0.4525 -0.9227 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8293 1.7221 1.6980 31 1 2.5837 1.7066 1.9980 32 1 0.6925 3.9807 2.9147 33 1 2.4421 3.8164 3.1977 34 1 1.4304 6.5493 5.4489 35 1 3.9731 0.6165 0.0831 36 1 3.8648 2.3880 -0.0512 37 1 5.6829 0.8776 -1.6144 38 1 5.3762 2.3871 -2.5371 39 1 5.8929 -0.0783 -3.7358 40 1 4.9705 1.2328 -4.5182 41 1 2.0518 -0.0992 -2.5671 42 1 3.4223 -0.8317 -1.6795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609575023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:09 Heat of formation + Delta-G solvation = -45.757441 kcal Electronic energy + Delta-G solvation = -20644.453156 eV Core-core repulsion = 17623.483947 eV Total energy + Delta-G solvation = -3020.969209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71634 -39.18482 -37.33072 -35.51944 -33.99122 -33.53532 -31.24130 -30.41881 -28.33568 -26.16564 -25.01584 -23.52624 -22.91735 -21.85173 -21.49665 -18.52666 -18.34080 -17.55341 -17.08887 -16.68754 -16.11468 -16.00600 -15.74523 -15.40983 -14.86462 -14.54210 -14.36206 -14.24430 -14.04259 -13.72836 -13.68286 -13.23497 -13.00836 -12.76878 -12.69773 -12.64487 -12.49202 -12.40977 -12.37994 -12.04448 -11.82565 -11.71230 -11.61049 -11.49321 -11.20183 -11.06844 -10.54048 -10.44413 -9.19749 -8.18638 -6.26704 1.41153 1.43277 1.49970 2.10735 2.18560 2.42004 2.81534 3.05112 3.17044 3.39671 3.62536 3.90314 3.94963 4.10868 4.19992 4.28599 4.35843 4.37366 4.45558 4.51046 4.66851 4.68839 4.76660 4.80087 4.82126 4.87747 4.90753 4.97368 4.99823 5.06026 5.13151 5.17295 5.34031 5.41755 5.47904 5.63080 5.80032 6.06019 6.12270 6.24443 6.26562 6.84594 6.97278 7.41823 8.92022 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.004464 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.880742 B = 6270.383416 C = 6839.704807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 N -0.556 5.556 4 C 0.070 3.930 5 C 0.023 3.977 6 H 0.115 0.885 7 C 0.268 3.732 8 N -0.517 5.517 9 C 0.038 3.962 10 C -0.539 4.539 11 H 0.053 0.947 12 C 0.014 3.986 13 N -0.923 5.923 14 Si 0.946 3.054 15 H -0.282 1.282 16 H -0.282 1.282 17 H -0.262 1.262 18 C 0.063 3.937 19 C -0.113 4.113 20 H 0.072 0.928 21 C -0.145 4.145 22 C 0.045 3.955 23 O -0.414 6.414 24 C 0.055 3.945 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.074 0.926 32 H -0.001 1.001 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -14.546 -9.753 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 N -0.280 5.280 4 C -0.059 4.059 5 C 0.002 3.998 6 H 0.132 0.868 7 C -0.048 4.048 8 N -0.195 5.195 9 C -0.001 4.001 10 C -0.577 4.577 11 H 0.071 0.929 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.772 3.228 15 H -0.208 1.208 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.064 4.064 19 C -0.132 4.132 20 H 0.091 0.909 21 C -0.183 4.183 22 C -0.031 4.031 23 O -0.334 6.334 24 C -0.020 4.020 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.053 -13.888 -11.112 19.134 hybrid contribution 0.453 0.949 1.167 1.571 sum 7.506 -12.939 -9.945 17.963 Atomic orbital electron populations 1.21786 0.95650 1.01848 1.01236 1.22512 0.95799 0.88279 1.02487 1.61887 1.18828 1.18265 1.29052 1.22091 1.02802 0.90692 0.90277 1.19187 0.92009 0.95500 0.93149 0.86782 1.29340 0.93535 0.90286 0.91608 1.80975 1.12966 1.12017 1.13508 1.18985 0.96930 0.93995 0.90148 1.21513 1.48848 0.93498 0.93833 0.92918 1.25681 0.94943 1.02759 0.95172 1.70021 1.49944 1.36925 0.99398 0.85789 0.79059 0.80798 0.77172 1.20831 1.20726 1.18668 1.22111 0.87889 1.02749 0.93693 1.22795 0.96467 0.97499 0.96431 0.90949 1.23175 0.95797 1.02196 0.97141 1.23244 0.88008 0.93574 0.98252 1.88374 1.39102 1.66824 1.39099 1.23748 0.96794 0.96118 0.85377 0.90586 0.93933 0.93811 0.88517 0.93367 0.90684 0.90814 0.98237 0.94606 0.92721 0.92154 0.89874 0.88938 0.89044 0.90214 0.91313 0.90017 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 10.03 71.98 0.72 -2.50 16 2 C 0.04 0.71 5.34 86.30 0.46 1.17 16 3 N -0.56 -13.08 3.93 -896.24 -3.52 -16.61 16 4 C 0.07 1.91 4.17 86.30 0.36 2.27 16 5 C 0.02 0.83 2.25 -12.60 -0.03 0.80 16 6 H 0.11 3.68 6.75 -2.39 -0.02 3.67 16 7 C 0.27 11.08 13.61 89.44 1.22 12.30 16 8 N -0.52 -23.48 18.54 20.01 0.37 -23.11 16 9 C 0.04 1.74 4.42 29.85 0.13 1.87 16 10 C -0.54 -28.32 8.60 25.60 0.22 -28.10 16 11 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 12 C 0.01 0.73 5.46 84.66 0.46 1.20 16 13 N -0.92 -52.61 13.29 21.45 0.28 -52.33 16 14 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 C 0.06 1.22 4.53 86.30 0.39 1.61 16 19 C -0.11 -2.18 3.34 -9.28 -0.03 -2.21 16 20 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 21 C -0.15 -2.19 6.52 31.91 0.21 -1.99 16 22 C 0.05 0.77 7.79 72.45 0.56 1.33 16 23 O -0.41 -9.43 11.36 -148.98 -1.69 -11.12 16 24 C 0.06 1.07 5.30 72.65 0.39 1.46 16 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.04 1.06 6.46 -2.38 -0.02 1.04 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.66 3.42 -2.39 -0.01 1.65 16 29 H 0.05 0.84 8.05 -2.39 -0.02 0.82 16 30 H 0.07 2.16 6.22 -2.39 -0.01 2.15 16 31 H 0.07 1.76 7.99 -2.39 -0.02 1.74 16 32 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 35 H 0.06 0.96 7.88 -2.39 -0.02 0.94 16 36 H 0.08 1.67 6.47 -2.39 -0.02 1.65 16 37 H 0.09 1.14 8.04 -2.38 -0.02 1.12 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.70 7.17 -2.39 -0.02 1.69 16 42 H 0.07 1.21 7.10 -2.39 -0.02 1.19 16 Total: -1.00 -64.12 335.90 3.52 -60.59 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.99 Total: 8.20 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 5.06 Total: -10.78 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.87 Total: -92.05 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.69 Total: -11.12 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.12 3.52 -60.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.837 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds