Wall clock time and date at job start Mon Mar 30 2020 00:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46908 * 109.47203 * 2 1 4 4 C 1.46904 * 111.00003 * 196.23070 * 3 2 1 5 5 C 1.52995 * 109.46768 * 66.05253 * 4 3 2 6 6 H 1.09007 * 109.47235 * 304.99370 * 5 4 3 7 7 C 1.47195 * 109.47520 * 64.99747 * 5 4 3 8 8 N 4.43045 * 101.10627 * 308.63772 * 2 1 3 9 9 C 1.53006 * 109.46815 * 184.99870 * 5 4 3 10 10 C 1.50707 * 109.46990 * 174.99701 * 9 5 4 11 11 H 1.07994 * 119.99914 * 0.02562 * 10 9 5 12 12 C 1.37875 * 120.00009 * 179.97438 * 10 9 5 13 13 N 1.31509 * 119.99990 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99921 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47048 * 89.99607 * 14 12 10 16 16 H 1.48503 * 109.46648 * 329.99647 * 14 12 10 17 17 H 1.48497 * 109.47098 * 209.99785 * 14 12 10 18 18 C 1.46903 * 110.99394 * 72.27956 * 3 2 1 19 19 C 1.53001 * 109.46638 * 200.18635 * 18 3 2 20 20 H 1.08999 * 110.80330 * 307.95394 * 19 18 3 21 21 C 1.54820 * 110.90440 * 184.32742 * 19 18 3 22 22 C 1.54096 * 104.18655 * 220.91949 * 21 19 18 23 23 O 1.43743 * 107.29396 * 357.97455 * 22 21 19 24 24 C 1.44418 * 107.00585 * 26.48325 * 23 22 21 25 25 H 1.09003 * 109.46908 * 301.26778 * 1 2 3 26 26 H 1.09004 * 109.47295 * 61.25897 * 1 2 3 27 27 H 1.09000 * 109.47374 * 181.26421 * 1 2 3 28 28 H 1.09000 * 109.47265 * 240.00716 * 2 1 3 29 29 H 1.08994 * 109.47394 * 120.00491 * 2 1 3 30 30 H 1.08999 * 109.46925 * 306.05104 * 4 3 2 31 31 H 1.09001 * 109.46782 * 186.05206 * 4 3 2 32 32 H 1.08997 * 109.47255 * 54.99686 * 9 5 4 33 33 H 1.08999 * 109.46586 * 294.99543 * 9 5 4 34 34 H 0.97006 * 119.99720 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.47411 * 320.18565 * 18 3 2 36 36 H 1.09004 * 109.47265 * 80.18691 * 18 3 2 37 37 H 1.08998 * 110.48911 * 339.60433 * 21 19 18 38 38 H 1.09004 * 110.48180 * 102.24590 * 21 19 18 39 39 H 1.09000 * 109.87731 * 117.39643 * 22 21 19 40 40 H 1.08995 * 109.88157 * 238.54776 * 22 21 19 41 41 H 1.08995 * 110.65641 * 201.48565 * 24 23 22 42 42 H 1.09003 * 110.59868 * 78.47146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4366 1.4424 -0.3833 5 6 3.5888 1.0027 -1.8408 6 1 3.1429 0.0166 -1.9713 7 6 2.9085 1.9688 -2.7185 8 7 2.3834 2.7145 -3.3959 9 6 5.0742 0.9426 -2.2029 10 6 5.2294 0.3926 -3.5974 11 1 4.3560 0.1142 -4.1684 12 6 6.4864 0.2458 -4.1446 13 7 6.6218 -0.2337 -5.3617 14 14 7.9970 0.7281 -3.1572 15 1 8.4720 -0.4419 -2.3758 16 1 7.6496 1.8347 -2.2298 17 1 9.0703 1.1751 -4.0811 18 6 1.8015 2.0204 1.3064 19 6 1.8393 3.5415 1.1463 20 1 2.7451 3.8537 0.6264 21 6 1.7208 4.2448 2.5205 22 6 0.7806 5.4365 2.2550 23 8 0.4549 5.4202 0.8551 24 6 0.5748 4.0518 0.4094 25 1 -0.3633 0.5334 0.8784 26 1 -0.3634 0.4942 -0.9011 27 1 -0.3634 -1.0274 0.0227 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.0140 0.7775 0.2590 31 1 3.8021 2.4633 -0.2717 32 1 5.5944 0.2953 -1.4970 33 1 5.4997 1.9451 -2.1583 34 1 7.5062 -0.3373 -5.7465 35 1 0.8298 1.7204 1.6987 36 1 2.5845 1.7082 1.9976 37 1 1.2841 3.5709 3.2575 38 1 2.6971 4.5961 2.8546 39 1 -0.1278 5.3311 2.8482 40 1 1.2844 6.3695 2.5076 41 1 0.7169 4.0102 -0.6704 42 1 -0.3010 3.4741 0.7050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609575024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:12 Heat of formation + Delta-G solvation = -28.926828 kcal Electronic energy + Delta-G solvation = -20711.292701 eV Core-core repulsion = 17691.053322 eV Total energy + Delta-G solvation = -3020.239379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72879 -38.20022 -35.89743 -33.74602 -32.93754 -32.02484 -30.42682 -29.29186 -27.23886 -25.01918 -23.41086 -22.75063 -21.46776 -21.08204 -20.22372 -17.06142 -16.91725 -16.46588 -16.11930 -15.54531 -15.04340 -14.83764 -14.48543 -14.18580 -13.86438 -13.62225 -13.26699 -13.03537 -12.52553 -12.46245 -12.16473 -12.05145 -11.92009 -11.75428 -11.59159 -11.35216 -11.29618 -11.17349 -11.04747 -10.97216 -10.63026 -10.54452 -10.31047 -9.90770 -9.74496 -9.73470 -9.32334 -8.62764 -8.29869 -6.11527 -4.12203 3.24432 3.33821 3.34472 3.66486 3.74895 3.81849 3.95972 4.37265 4.48188 4.59790 4.78091 4.82065 4.87795 5.02757 5.14759 5.23218 5.23889 5.29759 5.33140 5.45468 5.49241 5.54650 5.62279 5.64320 5.65886 5.76651 5.77707 5.88220 5.97859 5.98543 6.12371 6.21108 6.22652 6.33228 6.81362 6.90317 7.05392 7.08476 7.14276 7.62772 8.39805 8.56122 8.92178 9.48377 11.01600 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004748 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.038807 B = 5895.227925 C = 6227.735054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.541 5.541 4 C 0.058 3.942 5 C 0.020 3.980 6 H 0.106 0.894 7 C 0.252 3.748 8 N -0.469 5.469 9 C -0.005 4.005 10 C -0.528 4.528 11 H 0.074 0.926 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.264 1.264 17 H -0.287 1.287 18 C 0.065 3.935 19 C -0.117 4.117 20 H 0.088 0.912 21 C -0.152 4.152 22 C 0.047 3.953 23 O -0.383 6.383 24 C 0.063 3.937 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 3.083 19.403 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.265 5.265 4 C -0.071 4.071 5 C -0.002 4.002 6 H 0.123 0.877 7 C -0.065 4.065 8 N -0.146 5.146 9 C -0.044 4.044 10 C -0.565 4.565 11 H 0.092 0.908 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.189 1.189 17 H -0.213 1.213 18 C -0.063 4.063 19 C -0.136 4.136 20 H 0.106 0.894 21 C -0.190 4.190 22 C -0.030 4.030 23 O -0.302 6.302 24 C -0.013 4.013 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.626 4.596 17.760 21.200 hybrid contribution 1.707 -0.781 1.335 2.304 sum -8.919 3.815 19.095 21.418 Atomic orbital electron populations 1.21784 0.95150 1.01235 1.02241 1.22187 0.95925 0.88718 1.01563 1.62007 1.18618 1.17576 1.28334 1.22306 0.87563 1.02166 0.95054 1.19003 0.97851 0.94618 0.88727 0.87678 1.28661 0.91751 0.93374 0.92700 1.81011 1.11623 1.11387 1.10552 1.19642 0.88385 0.97968 0.98437 1.21018 0.94462 1.43159 0.97894 0.90781 1.24983 0.98962 0.94356 0.94742 1.69905 1.23581 1.45198 1.14781 0.86831 0.82972 0.79474 0.80364 1.20076 1.18873 1.21284 1.22073 1.01242 0.92831 0.90133 1.22738 1.00351 0.95128 0.95377 0.89360 1.22973 1.00746 0.97485 0.97825 1.23100 0.97488 0.98782 0.83598 1.88894 1.90404 1.27688 1.23221 1.23525 0.95727 0.81465 1.00580 0.93144 0.91859 0.92444 0.89669 0.94686 0.92862 0.90198 0.95044 0.95690 0.92560 0.90516 0.94118 0.90708 0.90506 0.92749 0.90212 0.88358 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.00 37.15 0.37 -1.05 16 2 C 0.04 0.47 5.55 -3.82 -0.02 0.45 16 3 N -0.54 -6.43 4.01 -234.62 -0.94 -7.37 16 4 C 0.06 0.77 4.15 -3.82 -0.02 0.76 16 5 C 0.02 0.35 2.16 -93.41 -0.20 0.14 16 6 H 0.11 1.75 6.10 -51.93 -0.32 1.43 16 7 C 0.25 5.15 13.67 -20.76 -0.28 4.87 16 8 N -0.47 -10.55 18.54 42.15 0.78 -9.77 16 9 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 10 C -0.53 -14.12 9.15 -34.44 -0.32 -14.43 16 11 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 14 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.07 0.64 4.17 -3.82 -0.02 0.62 16 19 C -0.12 -1.24 3.18 -88.61 -0.28 -1.53 16 20 H 0.09 1.08 6.73 -51.93 -0.35 0.73 16 21 C -0.15 -1.30 6.60 -25.20 -0.17 -1.46 16 22 C 0.05 0.46 7.70 37.73 0.29 0.75 16 23 O -0.38 -5.17 11.52 -35.23 -0.41 -5.58 16 24 C 0.06 0.78 7.11 38.21 0.27 1.05 16 25 H 0.05 0.44 6.52 -51.93 -0.34 0.10 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.00 5.86 -51.93 -0.30 0.70 16 29 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 30 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.08 1.08 6.62 -51.93 -0.34 0.74 16 32 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 33 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 0.68 6.10 -51.93 -0.32 0.36 16 36 H 0.04 0.37 7.99 -51.93 -0.42 -0.04 16 37 H 0.07 0.53 7.86 -51.93 -0.41 0.12 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -31.36 336.29 -6.88 -38.25 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.93 Total: -2.13 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.56 Total: -8.13 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.61 Total: -43.35 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.41 Total: -5.58 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.36 -6.88 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.319 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds