Wall clock time and date at job start Mon Mar 30 2020 00:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46908 * 109.47203 * 2 1 4 4 C 1.46904 * 111.00003 * 196.23070 * 3 2 1 5 5 C 1.52995 * 109.46768 * 66.05253 * 4 3 2 6 6 H 1.09007 * 109.47235 * 304.99370 * 5 4 3 7 7 C 1.47195 * 109.47520 * 64.99747 * 5 4 3 8 8 N 4.43045 * 101.10627 * 308.63772 * 2 1 3 9 9 C 1.53006 * 109.46815 * 184.99870 * 5 4 3 10 10 C 1.50707 * 109.46990 * 174.99701 * 9 5 4 11 11 H 1.07994 * 119.99914 * 0.02562 * 10 9 5 12 12 C 1.37875 * 120.00009 * 179.97438 * 10 9 5 13 13 N 1.31509 * 119.99990 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99921 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47048 * 89.99607 * 14 12 10 16 16 H 1.48503 * 109.46648 * 329.99647 * 14 12 10 17 17 H 1.48497 * 109.47098 * 209.99785 * 14 12 10 18 18 C 1.46903 * 110.99394 * 72.27956 * 3 2 1 19 19 C 1.53001 * 109.46638 * 200.18635 * 18 3 2 20 20 H 1.08999 * 110.80330 * 307.95394 * 19 18 3 21 21 C 1.54820 * 110.90440 * 184.32742 * 19 18 3 22 22 C 1.54096 * 104.18655 * 220.91949 * 21 19 18 23 23 O 1.43743 * 107.29396 * 357.97455 * 22 21 19 24 24 C 1.44418 * 107.00585 * 26.48325 * 23 22 21 25 25 H 1.09003 * 109.46908 * 301.26778 * 1 2 3 26 26 H 1.09004 * 109.47295 * 61.25897 * 1 2 3 27 27 H 1.09000 * 109.47374 * 181.26421 * 1 2 3 28 28 H 1.09000 * 109.47265 * 240.00716 * 2 1 3 29 29 H 1.08994 * 109.47394 * 120.00491 * 2 1 3 30 30 H 1.08999 * 109.46925 * 306.05104 * 4 3 2 31 31 H 1.09001 * 109.46782 * 186.05206 * 4 3 2 32 32 H 1.08997 * 109.47255 * 54.99686 * 9 5 4 33 33 H 1.08999 * 109.46586 * 294.99543 * 9 5 4 34 34 H 0.97006 * 119.99720 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.47411 * 320.18565 * 18 3 2 36 36 H 1.09004 * 109.47265 * 80.18691 * 18 3 2 37 37 H 1.08998 * 110.48911 * 339.60433 * 21 19 18 38 38 H 1.09004 * 110.48180 * 102.24590 * 21 19 18 39 39 H 1.09000 * 109.87731 * 117.39643 * 22 21 19 40 40 H 1.08995 * 109.88157 * 238.54776 * 22 21 19 41 41 H 1.08995 * 110.65641 * 201.48565 * 24 23 22 42 42 H 1.09003 * 110.59868 * 78.47146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4366 1.4424 -0.3833 5 6 3.5888 1.0027 -1.8408 6 1 3.1429 0.0166 -1.9713 7 6 2.9085 1.9688 -2.7185 8 7 2.3834 2.7145 -3.3959 9 6 5.0742 0.9426 -2.2029 10 6 5.2294 0.3926 -3.5974 11 1 4.3560 0.1142 -4.1684 12 6 6.4864 0.2458 -4.1446 13 7 6.6218 -0.2337 -5.3617 14 14 7.9970 0.7281 -3.1572 15 1 8.4720 -0.4419 -2.3758 16 1 7.6496 1.8347 -2.2298 17 1 9.0703 1.1751 -4.0811 18 6 1.8015 2.0204 1.3064 19 6 1.8393 3.5415 1.1463 20 1 2.7451 3.8537 0.6264 21 6 1.7208 4.2448 2.5205 22 6 0.7806 5.4365 2.2550 23 8 0.4549 5.4202 0.8551 24 6 0.5748 4.0518 0.4094 25 1 -0.3633 0.5334 0.8784 26 1 -0.3634 0.4942 -0.9011 27 1 -0.3634 -1.0274 0.0227 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.0140 0.7775 0.2590 31 1 3.8021 2.4633 -0.2717 32 1 5.5944 0.2953 -1.4970 33 1 5.4997 1.9451 -2.1583 34 1 7.5062 -0.3373 -5.7465 35 1 0.8298 1.7204 1.6987 36 1 2.5845 1.7082 1.9976 37 1 1.2841 3.5709 3.2575 38 1 2.6971 4.5961 2.8546 39 1 -0.1278 5.3311 2.8482 40 1 1.2844 6.3695 2.5076 41 1 0.7169 4.0102 -0.6704 42 1 -0.3010 3.4741 0.7050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609575024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:12 Heat of formation + Delta-G solvation = -49.819458 kcal Electronic energy + Delta-G solvation = -20712.198673 eV Core-core repulsion = 17691.053322 eV Total energy + Delta-G solvation = -3021.145351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60086 -39.28096 -37.35233 -35.49913 -34.07026 -33.54765 -31.36687 -30.28014 -28.67839 -26.07716 -24.57343 -23.56637 -23.22878 -21.91545 -21.09767 -18.91614 -18.31117 -17.49440 -17.05875 -16.61357 -16.24772 -15.79836 -15.72535 -15.40575 -14.94610 -14.77625 -14.63379 -14.33040 -13.94256 -13.90228 -13.57375 -13.17790 -13.06469 -12.88356 -12.79327 -12.47739 -12.44834 -12.29032 -12.10642 -12.07530 -11.84195 -11.76896 -11.56399 -11.50185 -11.26297 -11.08350 -10.72766 -10.61287 -9.14296 -8.24481 -6.30135 1.41751 1.45566 1.55476 2.07629 2.15242 2.41080 2.86493 3.10293 3.12525 3.34253 3.72493 3.81322 3.98027 4.06970 4.19437 4.25832 4.35558 4.36939 4.48756 4.60649 4.65854 4.70757 4.74349 4.78453 4.82939 4.87827 4.91583 4.94402 4.96253 5.06034 5.16007 5.21666 5.25268 5.33664 5.43957 5.46944 5.64137 5.97940 6.15782 6.27196 6.28284 6.77482 6.93248 7.34445 8.92579 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004748 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.038807 B = 5895.227925 C = 6227.735054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.559 5.559 4 C 0.068 3.932 5 C 0.024 3.976 6 H 0.113 0.887 7 C 0.263 3.737 8 N -0.516 5.516 9 C -0.003 4.003 10 C -0.531 4.531 11 H 0.027 0.973 12 C 0.004 3.996 13 N -0.954 5.954 14 Si 0.948 3.052 15 H -0.255 1.255 16 H -0.238 1.238 17 H -0.296 1.296 18 C 0.071 3.929 19 C -0.115 4.115 20 H 0.069 0.931 21 C -0.142 4.142 22 C 0.038 3.962 23 O -0.416 6.416 24 C 0.064 3.936 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 2.862 23.547 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.283 5.283 4 C -0.060 4.060 5 C 0.002 3.998 6 H 0.131 0.869 7 C -0.053 4.053 8 N -0.193 5.193 9 C -0.042 4.042 10 C -0.569 4.569 11 H 0.046 0.954 12 C -0.193 4.193 13 N -0.595 5.595 14 Si 0.771 3.229 15 H -0.180 1.180 16 H -0.161 1.161 17 H -0.222 1.222 18 C -0.056 4.056 19 C -0.134 4.134 20 H 0.087 0.913 21 C -0.180 4.180 22 C -0.038 4.038 23 O -0.336 6.336 24 C -0.013 4.013 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.976 4.377 21.938 24.494 hybrid contribution 1.374 -0.714 -0.027 1.549 sum -8.602 3.663 21.912 23.823 Atomic orbital electron populations 1.21748 0.94610 1.01957 1.01668 1.22212 0.96359 0.88097 1.01791 1.61914 1.17630 1.18592 1.30206 1.22149 0.89171 1.02628 0.92083 1.19129 0.95242 0.94420 0.90973 0.86893 1.29401 0.90961 0.92908 0.92043 1.81004 1.13068 1.13154 1.12083 1.19585 0.91142 0.97891 0.95540 1.21389 0.92890 1.42316 1.00277 0.95415 1.26032 1.02987 0.94440 0.95820 1.70092 1.24412 1.47674 1.17319 0.85694 0.77811 0.80454 0.78952 1.17962 1.16150 1.22249 1.22093 1.02708 0.91643 0.89196 1.22690 0.98316 0.96145 0.96240 0.91263 1.22945 1.01195 0.96986 0.96829 1.23350 0.98703 0.99938 0.81816 1.88854 1.90781 1.28335 1.25610 1.23454 0.97321 0.81573 0.98913 0.91840 0.94173 0.91200 0.91202 0.92544 0.90114 0.90247 0.91940 0.95673 0.92668 0.89035 0.92153 0.88403 0.89437 0.91260 0.89482 0.91775 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 10.00 71.98 0.72 -1.76 16 2 C 0.04 0.80 5.55 86.30 0.48 1.28 16 3 N -0.56 -11.93 4.01 -896.22 -3.60 -15.52 16 4 C 0.07 1.64 4.15 86.30 0.36 2.00 16 5 C 0.02 0.81 2.16 -12.60 -0.03 0.78 16 6 H 0.11 3.66 6.10 -2.38 -0.01 3.65 16 7 C 0.26 10.91 13.67 89.44 1.22 12.13 16 8 N -0.52 -24.02 18.54 20.00 0.37 -23.65 16 9 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 10 C -0.53 -28.76 9.15 25.60 0.23 -28.53 16 11 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 12 C 0.00 0.22 5.47 84.65 0.46 0.68 16 13 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 14 Si 0.95 41.43 27.47 68.60 1.88 43.31 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 17 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 18 C 0.07 1.13 4.17 86.30 0.36 1.49 16 19 C -0.11 -2.19 3.18 -9.49 -0.03 -2.22 16 20 H 0.07 1.59 6.73 -2.39 -0.02 1.58 16 21 C -0.14 -1.94 6.60 31.59 0.21 -1.73 16 22 C 0.04 0.66 7.70 72.35 0.56 1.22 16 23 O -0.42 -11.07 11.52 -148.98 -1.72 -12.79 16 24 C 0.06 1.54 7.11 72.66 0.52 2.06 16 25 H 0.06 0.93 6.52 -2.39 -0.02 0.91 16 26 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.53 5.86 -2.39 -0.01 1.51 16 29 H 0.06 0.84 8.05 -2.39 -0.02 0.83 16 30 H 0.08 1.53 8.12 -2.39 -0.02 1.52 16 31 H 0.08 1.94 6.62 -2.39 -0.02 1.92 16 32 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 33 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 34 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 35 H 0.09 1.23 6.10 -2.39 -0.01 1.21 16 36 H 0.06 0.78 7.99 -2.38 -0.02 0.76 16 37 H 0.10 0.92 7.86 -2.39 -0.02 0.90 16 38 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.46 7.94 -2.39 -0.02 1.44 16 Total: -1.00 -71.62 336.29 3.34 -68.27 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.93 Total: 11.92 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.16 Total: -12.59 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -2.93 Total: -98.13 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.72 Total: -12.79 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.88 Total: 43.31 kcal Total: -71.62 3.34 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.455 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds