Wall clock time and date at job start Mon Mar 30 2020 00:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47124 * 2 1 4 4 C 1.46901 * 110.99880 * 60.75229 * 3 2 1 5 5 C 1.53004 * 109.47224 * 78.37050 * 4 3 2 6 6 H 1.08996 * 109.47291 * 52.77154 * 5 4 3 7 7 C 1.47206 * 109.46971 * 292.77507 * 5 4 3 8 8 N 3.12386 * 98.48122 * 104.95635 * 2 1 3 9 9 C 1.52994 * 109.47275 * 172.77717 * 5 4 3 10 10 C 1.50702 * 109.47360 * 185.00154 * 9 5 4 11 11 H 1.08005 * 119.99875 * 359.97438 * 10 9 5 12 12 C 1.37874 * 120.00260 * 179.97438 * 10 9 5 13 13 N 1.31511 * 119.99856 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99935 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47269 * 60.00092 * 14 12 10 16 16 H 1.48501 * 109.47321 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47497 * 300.00164 * 14 12 10 18 18 C 1.46896 * 111.00354 * 296.79586 * 3 2 1 19 19 C 1.52990 * 109.47478 * 288.77250 * 18 3 2 20 20 H 1.09005 * 110.74944 * 60.65293 * 19 18 3 21 21 C 1.55310 * 110.85067 * 184.34508 * 19 18 3 22 22 C 1.54948 * 100.94028 * 152.32521 * 21 19 18 23 23 O 1.43643 * 105.13890 * 323.55973 * 22 21 19 24 24 C 1.43237 * 109.97235 * 24.42710 * 23 22 21 25 25 H 1.08993 * 109.47215 * 64.98215 * 1 2 3 26 26 H 1.08997 * 109.47116 * 184.99034 * 1 2 3 27 27 H 1.09001 * 109.46559 * 304.98417 * 1 2 3 28 28 H 1.09005 * 109.46975 * 240.00656 * 2 1 3 29 29 H 1.08994 * 109.47716 * 120.00305 * 2 1 3 30 30 H 1.08997 * 109.47047 * 318.36778 * 4 3 2 31 31 H 1.08996 * 109.47625 * 198.36584 * 4 3 2 32 32 H 1.08999 * 109.47312 * 304.99535 * 9 5 4 33 33 H 1.08997 * 109.47486 * 64.99599 * 9 5 4 34 34 H 0.97004 * 119.99859 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.46684 * 48.77926 * 18 3 2 36 36 H 1.09004 * 109.46935 * 168.77046 * 18 3 2 37 37 H 1.09003 * 111.12563 * 270.24451 * 21 19 18 38 38 H 1.09001 * 111.12180 * 34.40842 * 21 19 18 39 39 H 1.08998 * 110.30632 * 204.63898 * 22 21 19 40 40 H 1.09007 * 110.39085 * 82.51579 * 22 21 19 41 41 H 1.09002 * 109.82974 * 238.78170 * 24 23 22 42 42 H 1.08996 * 109.83047 * 117.80414 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5634 2.1046 1.1966 5 6 2.4287 1.7046 2.3933 6 1 3.4808 1.8397 2.1423 7 6 2.1815 0.2924 2.7273 8 7 1.9907 -0.7974 2.9850 9 6 2.0743 2.5825 3.5952 10 6 3.0089 2.2732 4.7362 11 1 3.7785 1.5250 4.6163 12 6 2.8815 2.9454 5.9332 13 7 1.9448 3.8569 6.0791 14 14 4.0396 2.5616 7.3478 15 1 5.4384 2.8342 6.9303 16 1 3.6965 3.4146 8.5139 17 1 3.9051 1.1312 7.7235 18 6 1.6123 2.0875 -1.2241 19 6 2.4050 1.5415 -2.4133 20 1 2.2130 0.4772 -2.5495 21 6 2.0786 2.3364 -3.7070 22 6 3.3972 2.1596 -4.5013 23 8 4.4385 2.1957 -3.5125 24 6 3.9151 1.8091 -2.2365 25 1 -0.3633 0.4346 -0.9312 26 1 -0.3633 -1.0237 0.0894 27 1 -0.3632 0.5892 0.8420 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.5231 1.8499 1.3991 31 1 1.6486 3.1783 1.0295 32 1 2.1724 3.6325 3.3197 33 1 1.0477 2.3817 3.9017 34 1 1.8554 4.3301 6.9212 35 1 0.5471 1.9316 -1.3950 36 1 1.8104 3.1537 -1.1141 37 1 1.2370 1.8927 -4.2389 38 1 1.8912 3.3871 -3.4856 39 1 3.5225 2.9758 -5.2128 40 1 3.4019 1.2014 -5.0210 41 1 4.0662 2.6128 -1.5159 42 1 4.4133 0.9030 -1.8917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609575025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:15 Heat of formation + Delta-G solvation = -22.255234 kcal Electronic energy + Delta-G solvation = -20619.748986 eV Core-core repulsion = 17599.798909 eV Total energy + Delta-G solvation = -3019.950077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81625 -38.43056 -35.89344 -33.86549 -32.87207 -31.81638 -30.16120 -29.07701 -26.84005 -25.12502 -24.02188 -22.53731 -21.83141 -21.05159 -19.64291 -17.02561 -16.93176 -16.44531 -15.96385 -15.57602 -15.42059 -14.73261 -14.52565 -14.05327 -13.61483 -13.50158 -13.18607 -13.14352 -12.51991 -12.46134 -12.20549 -12.05862 -11.78044 -11.67333 -11.48774 -11.36141 -11.29269 -11.01827 -10.95228 -10.76872 -10.73024 -10.63687 -10.29263 -10.14248 -9.55128 -9.48776 -9.24497 -8.44994 -8.18568 -6.09479 -4.12561 3.31804 3.35804 3.39583 3.58334 3.65190 3.79660 3.90927 4.39760 4.43109 4.60062 4.77973 4.81203 5.02079 5.05323 5.14799 5.20875 5.28693 5.32726 5.39034 5.43563 5.51466 5.52892 5.56575 5.68434 5.73045 5.77001 5.91284 6.00379 6.02729 6.11605 6.16272 6.27648 6.42505 6.55936 6.94360 7.13440 7.16088 7.42840 7.52902 7.85534 8.23381 8.41318 8.91780 9.52977 11.01383 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.004189 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.750660 B = 6682.099207 C = 7132.222591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.029 3.971 3 N -0.535 5.535 4 C 0.055 3.945 5 C 0.010 3.990 6 H 0.110 0.890 7 C 0.253 3.747 8 N -0.482 5.482 9 C 0.033 3.967 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.060 3.940 19 C -0.116 4.116 20 H 0.082 0.918 21 C -0.152 4.152 22 C 0.052 3.948 23 O -0.391 6.391 24 C 0.066 3.934 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -1.278 -19.457 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.099 4.099 3 N -0.258 5.258 4 C -0.073 4.073 5 C -0.013 4.013 6 H 0.128 0.872 7 C -0.062 4.062 8 N -0.160 5.160 9 C -0.006 4.006 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.068 4.068 19 C -0.135 4.135 20 H 0.100 0.900 21 C -0.191 4.191 22 C -0.024 4.024 23 O -0.311 6.311 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.632 -2.747 -18.951 19.218 hybrid contribution -0.526 0.122 0.868 1.022 sum -2.157 -2.625 -18.083 18.399 Atomic orbital electron populations 1.22393 0.98426 1.02400 1.01829 1.22537 0.93069 0.90584 1.03688 1.62282 1.59508 1.02213 1.01809 1.22377 0.97571 0.98875 0.88516 1.19320 1.01892 0.83395 0.96648 0.87232 1.29159 0.92016 0.94696 0.90323 1.81034 1.10218 1.13599 1.11124 1.19159 0.97681 0.94264 0.89504 1.21108 1.16198 1.21822 0.97329 0.92555 1.24941 0.95459 0.94887 0.98606 1.69926 1.32558 1.24716 1.25890 0.86659 0.81381 0.78379 0.81701 1.19989 1.21202 1.20271 1.22143 0.97169 0.98470 0.89050 1.22712 0.95999 1.00445 0.94318 0.90007 1.23303 0.98304 1.01523 0.95926 1.23299 0.86303 1.01024 0.91807 1.88400 1.34433 1.89846 1.18401 1.23101 0.92134 1.00781 0.85034 0.92740 0.92313 0.91821 0.91152 0.89209 0.93224 0.89107 0.94291 0.95845 0.92756 0.93874 0.90228 0.90207 0.90108 0.90081 0.92592 0.90275 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 9.31 37.16 0.35 -1.97 16 2 C 0.03 0.38 5.55 -3.83 -0.02 0.36 16 3 N -0.54 -6.72 4.31 -234.64 -1.01 -7.74 16 4 C 0.05 0.79 4.53 -3.82 -0.02 0.77 16 5 C 0.01 0.17 2.40 -93.41 -0.22 -0.05 16 6 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 7 C 0.25 5.07 11.18 -20.76 -0.23 4.84 16 8 N -0.48 -10.32 17.54 42.15 0.74 -9.58 16 9 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 10 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 11 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.06 0.60 4.15 -3.83 -0.02 0.59 16 19 C -0.12 -1.09 2.93 -88.68 -0.26 -1.35 16 20 H 0.08 0.78 6.79 -51.93 -0.35 0.43 16 21 C -0.15 -1.19 6.62 -24.48 -0.16 -1.35 16 22 C 0.05 0.46 7.78 38.19 0.30 0.76 16 23 O -0.39 -4.80 11.36 -35.23 -0.40 -5.20 16 24 C 0.07 0.74 7.14 37.88 0.27 1.01 16 25 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.85 5.86 -51.93 -0.30 0.55 16 28 H 0.07 0.83 6.60 -51.93 -0.34 0.49 16 29 H 0.09 1.42 4.20 -51.93 -0.22 1.20 16 30 H 0.05 0.72 5.51 -51.93 -0.29 0.44 16 31 H 0.09 1.18 7.60 -51.93 -0.39 0.79 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.04 0.42 6.01 -51.93 -0.31 0.11 16 36 H 0.08 0.78 7.67 -51.93 -0.40 0.38 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -29.46 331.04 -7.19 -36.65 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.68 Total: -2.32 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.54 Total: -8.39 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.46 Total: -42.01 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.40 Total: -5.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.46 -7.19 -36.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.397 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds