Wall clock time and date at job start Mon Mar 30 2020 00:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47124 * 2 1 4 4 C 1.46901 * 110.99880 * 60.75229 * 3 2 1 5 5 C 1.53004 * 109.47224 * 78.37050 * 4 3 2 6 6 H 1.08996 * 109.47291 * 52.77154 * 5 4 3 7 7 C 1.47206 * 109.46971 * 292.77507 * 5 4 3 8 8 N 3.12386 * 98.48122 * 104.95635 * 2 1 3 9 9 C 1.52994 * 109.47275 * 172.77717 * 5 4 3 10 10 C 1.50702 * 109.47360 * 185.00154 * 9 5 4 11 11 H 1.08005 * 119.99875 * 359.97438 * 10 9 5 12 12 C 1.37874 * 120.00260 * 179.97438 * 10 9 5 13 13 N 1.31511 * 119.99856 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99935 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47269 * 60.00092 * 14 12 10 16 16 H 1.48501 * 109.47321 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47497 * 300.00164 * 14 12 10 18 18 C 1.46896 * 111.00354 * 296.79586 * 3 2 1 19 19 C 1.52990 * 109.47478 * 288.77250 * 18 3 2 20 20 H 1.09005 * 110.74944 * 60.65293 * 19 18 3 21 21 C 1.55310 * 110.85067 * 184.34508 * 19 18 3 22 22 C 1.54948 * 100.94028 * 152.32521 * 21 19 18 23 23 O 1.43643 * 105.13890 * 323.55973 * 22 21 19 24 24 C 1.43237 * 109.97235 * 24.42710 * 23 22 21 25 25 H 1.08993 * 109.47215 * 64.98215 * 1 2 3 26 26 H 1.08997 * 109.47116 * 184.99034 * 1 2 3 27 27 H 1.09001 * 109.46559 * 304.98417 * 1 2 3 28 28 H 1.09005 * 109.46975 * 240.00656 * 2 1 3 29 29 H 1.08994 * 109.47716 * 120.00305 * 2 1 3 30 30 H 1.08997 * 109.47047 * 318.36778 * 4 3 2 31 31 H 1.08996 * 109.47625 * 198.36584 * 4 3 2 32 32 H 1.08999 * 109.47312 * 304.99535 * 9 5 4 33 33 H 1.08997 * 109.47486 * 64.99599 * 9 5 4 34 34 H 0.97004 * 119.99859 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.46684 * 48.77926 * 18 3 2 36 36 H 1.09004 * 109.46935 * 168.77046 * 18 3 2 37 37 H 1.09003 * 111.12563 * 270.24451 * 21 19 18 38 38 H 1.09001 * 111.12180 * 34.40842 * 21 19 18 39 39 H 1.08998 * 110.30632 * 204.63898 * 22 21 19 40 40 H 1.09007 * 110.39085 * 82.51579 * 22 21 19 41 41 H 1.09002 * 109.82974 * 238.78170 * 24 23 22 42 42 H 1.08996 * 109.83047 * 117.80414 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5634 2.1046 1.1966 5 6 2.4287 1.7046 2.3933 6 1 3.4808 1.8397 2.1423 7 6 2.1815 0.2924 2.7273 8 7 1.9907 -0.7974 2.9850 9 6 2.0743 2.5825 3.5952 10 6 3.0089 2.2732 4.7362 11 1 3.7785 1.5250 4.6163 12 6 2.8815 2.9454 5.9332 13 7 1.9448 3.8569 6.0791 14 14 4.0396 2.5616 7.3478 15 1 5.4384 2.8342 6.9303 16 1 3.6965 3.4146 8.5139 17 1 3.9051 1.1312 7.7235 18 6 1.6123 2.0875 -1.2241 19 6 2.4050 1.5415 -2.4133 20 1 2.2130 0.4772 -2.5495 21 6 2.0786 2.3364 -3.7070 22 6 3.3972 2.1596 -4.5013 23 8 4.4385 2.1957 -3.5125 24 6 3.9151 1.8091 -2.2365 25 1 -0.3633 0.4346 -0.9312 26 1 -0.3633 -1.0237 0.0894 27 1 -0.3632 0.5892 0.8420 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.5231 1.8499 1.3991 31 1 1.6486 3.1783 1.0295 32 1 2.1724 3.6325 3.3197 33 1 1.0477 2.3817 3.9017 34 1 1.8554 4.3301 6.9212 35 1 0.5471 1.9316 -1.3950 36 1 1.8104 3.1537 -1.1141 37 1 1.2370 1.8927 -4.2389 38 1 1.8912 3.3871 -3.4856 39 1 3.5225 2.9758 -5.2128 40 1 3.4019 1.2014 -5.0210 41 1 4.0662 2.6128 -1.5159 42 1 4.4133 0.9030 -1.8917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609575025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:14 Heat of formation + Delta-G solvation = -40.453895 kcal Electronic energy + Delta-G solvation = -20620.538139 eV Core-core repulsion = 17599.798909 eV Total energy + Delta-G solvation = -3020.739230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69385 -39.53007 -37.32110 -35.64509 -34.04550 -33.29256 -31.05667 -30.11717 -28.35827 -26.14949 -25.37007 -23.71265 -23.14399 -22.03173 -20.54969 -18.49962 -18.33072 -17.79446 -16.87680 -16.74553 -16.48806 -16.29839 -15.54124 -15.28790 -14.80125 -14.64855 -14.44440 -14.23430 -13.98095 -13.79973 -13.62954 -13.23069 -13.08737 -13.03201 -12.59368 -12.57633 -12.55272 -12.39145 -12.18493 -12.04861 -11.91163 -11.83157 -11.61696 -11.49013 -11.22393 -10.95804 -10.54007 -10.37762 -9.18512 -8.18808 -6.26752 1.41496 1.42446 1.49755 1.99517 2.02871 2.41853 2.88202 3.10913 3.16523 3.29359 3.67321 3.85131 4.03907 4.07266 4.21440 4.24971 4.37042 4.39427 4.44207 4.51675 4.57480 4.64685 4.75528 4.80097 4.87550 4.90352 4.95190 4.99606 5.05199 5.08331 5.14139 5.17388 5.33728 5.40165 5.48222 5.64449 5.80312 6.06641 6.15662 6.19750 6.25326 6.78866 6.88646 7.41693 8.91830 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.004189 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.750660 B = 6682.099207 C = 7132.222591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.031 3.969 3 N -0.539 5.539 4 C 0.065 3.935 5 C 0.020 3.980 6 H 0.117 0.883 7 C 0.262 3.738 8 N -0.509 5.509 9 C 0.040 3.960 10 C -0.540 4.540 11 H 0.052 0.948 12 C 0.013 3.987 13 N -0.923 5.923 14 Si 0.946 3.054 15 H -0.264 1.264 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.062 3.938 19 C -0.109 4.109 20 H 0.083 0.917 21 C -0.143 4.143 22 C 0.044 3.956 23 O -0.417 6.417 24 C 0.064 3.936 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.036 0.964 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -1.030 -21.039 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.097 4.097 3 N -0.261 5.261 4 C -0.064 4.064 5 C -0.002 4.002 6 H 0.135 0.865 7 C -0.053 4.053 8 N -0.187 5.187 9 C 0.001 3.999 10 C -0.578 4.578 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.772 3.228 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.065 4.065 19 C -0.128 4.128 20 H 0.102 0.898 21 C -0.181 4.181 22 C -0.032 4.032 23 O -0.338 6.338 24 C -0.012 4.012 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.792 -2.502 -20.551 20.781 hybrid contribution -0.455 0.029 1.306 1.383 sum -2.247 -2.473 -19.246 19.534 Atomic orbital electron populations 1.22335 0.97618 1.02244 1.02269 1.22457 0.93690 0.90659 1.02921 1.62192 1.59740 1.02092 1.02115 1.22219 0.96445 0.99907 0.87833 1.19231 1.03111 0.81427 0.96455 0.86493 1.29485 0.91254 0.94967 0.89603 1.81022 1.11172 1.14503 1.11995 1.18973 0.95536 0.94981 0.90421 1.21527 1.16444 1.21246 0.98583 0.92995 1.25676 0.96890 0.94976 1.01017 1.70017 1.33983 1.25726 1.26522 0.85786 0.80117 0.77763 0.79147 1.18857 1.20646 1.20728 1.22197 0.97921 0.98564 0.87830 1.22649 0.94448 1.00843 0.94887 0.89821 1.23283 0.98358 1.01722 0.94717 1.23530 0.86094 1.02065 0.91532 1.88372 1.36253 1.89953 1.19185 1.23061 0.93460 0.99860 0.84799 0.90540 0.92472 0.93365 0.89732 0.92102 0.93372 0.87417 0.94530 0.98181 0.92709 0.92599 0.89526 0.88142 0.89580 0.88794 0.91837 0.91183 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.16 9.31 71.98 0.67 -3.49 16 2 C 0.03 0.76 5.55 86.30 0.48 1.24 16 3 N -0.54 -12.57 4.31 -896.26 -3.86 -16.43 16 4 C 0.06 1.76 4.53 86.30 0.39 2.15 16 5 C 0.02 0.71 2.40 -12.60 -0.03 0.68 16 6 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 7 C 0.26 10.48 11.18 89.44 1.00 11.48 16 8 N -0.51 -21.91 17.54 20.01 0.35 -21.56 16 9 C 0.04 1.82 4.42 29.85 0.13 1.95 16 10 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 11 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 12 C 0.01 0.74 5.46 84.65 0.46 1.20 16 13 N -0.92 -52.88 13.29 21.45 0.28 -52.59 16 14 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 C 0.06 1.09 4.15 86.30 0.36 1.44 16 19 C -0.11 -1.79 2.93 -9.53 -0.03 -1.82 16 20 H 0.08 1.37 6.79 -2.38 -0.02 1.35 16 21 C -0.14 -1.77 6.62 32.05 0.21 -1.56 16 22 C 0.04 0.67 7.78 72.65 0.56 1.24 16 23 O -0.42 -9.75 11.36 -148.98 -1.69 -11.44 16 24 C 0.06 1.38 7.14 72.45 0.52 1.90 16 25 H 0.08 1.35 6.50 -2.39 -0.02 1.34 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.23 5.86 -2.39 -0.01 1.22 16 28 H 0.08 1.83 6.60 -2.38 -0.02 1.81 16 29 H 0.06 1.88 4.20 -2.39 -0.01 1.87 16 30 H 0.05 1.35 5.51 -2.39 -0.01 1.34 16 31 H 0.11 2.59 7.60 -2.39 -0.02 2.57 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.06 0.87 6.01 -2.39 -0.01 0.86 16 36 H 0.09 1.44 7.67 -2.39 -0.02 1.42 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.01 8.04 -2.39 -0.02 0.99 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 1.60 7.81 -2.39 -0.02 1.58 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -62.92 331.04 3.06 -59.86 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.00 Total: 8.61 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.95 Total: -12.07 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -3.23 Total: -90.58 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.69 Total: -11.44 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.92 3.06 -59.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.409 kcal (2) G-P(sol) polarization free energy of solvation -62.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds