Wall clock time and date at job start Mon Mar 30 2020 00:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47279 * 2 1 4 4 C 1.46898 * 111.00098 * 294.57968 * 3 2 1 5 5 C 1.53003 * 109.47060 * 287.86986 * 4 3 2 6 6 H 1.08994 * 109.47524 * 56.40166 * 5 4 3 7 7 C 1.47205 * 109.46624 * 296.40303 * 5 4 3 8 8 N 4.50348 * 140.79944 * 316.72215 * 2 1 3 9 9 C 1.52999 * 109.47288 * 176.40611 * 5 4 3 10 10 C 1.50697 * 109.47024 * 184.99644 * 9 5 4 11 11 H 1.07993 * 120.00190 * 0.02562 * 10 9 5 12 12 C 1.37884 * 119.99577 * 179.97438 * 10 9 5 13 13 N 1.31513 * 120.00229 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99787 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47114 * 270.00310 * 14 12 10 16 16 H 1.48503 * 109.47093 * 29.99936 * 14 12 10 17 17 H 1.48496 * 109.47057 * 150.00269 * 14 12 10 18 18 C 1.46903 * 110.99680 * 58.53289 * 3 2 1 19 19 C 1.53003 * 109.47208 * 66.05043 * 18 3 2 20 20 H 1.09002 * 110.79659 * 305.69598 * 19 18 3 21 21 C 1.54810 * 110.90623 * 182.07145 * 19 18 3 22 22 C 1.54096 * 104.18585 * 220.91673 * 21 19 18 23 23 O 1.43745 * 107.29336 * 357.97149 * 22 21 19 24 24 C 1.44413 * 107.00327 * 26.48611 * 23 22 21 25 25 H 1.08997 * 109.46773 * 300.55145 * 1 2 3 26 26 H 1.08999 * 109.47343 * 60.55476 * 1 2 3 27 27 H 1.09000 * 109.47047 * 180.55519 * 1 2 3 28 28 H 1.08999 * 109.47040 * 239.99997 * 2 1 3 29 29 H 1.09000 * 109.46989 * 120.00641 * 2 1 3 30 30 H 1.08990 * 109.47325 * 167.86644 * 4 3 2 31 31 H 1.09001 * 109.47180 * 47.86302 * 4 3 2 32 32 H 1.09004 * 109.47274 * 64.99473 * 9 5 4 33 33 H 1.09003 * 109.46623 * 304.99789 * 9 5 4 34 34 H 0.97003 * 119.99945 * 0.02562 * 13 12 10 35 35 H 1.09003 * 109.46307 * 186.04325 * 18 3 2 36 36 H 1.08997 * 109.47323 * 306.04159 * 18 3 2 37 37 H 1.08999 * 110.48472 * 339.59553 * 21 19 18 38 38 H 1.08998 * 110.48671 * 102.24276 * 21 19 18 39 39 H 1.08995 * 109.87965 * 117.39240 * 22 21 19 40 40 H 1.08999 * 109.88360 * 238.54670 * 22 21 19 41 41 H 1.09002 * 110.65356 * 201.48424 * 24 23 22 42 42 H 1.09008 * 110.60280 * 78.47178 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6574 2.0715 -1.2471 5 6 2.5087 1.5260 -2.3955 6 1 2.3784 0.4460 -2.4633 7 6 3.9261 1.8343 -2.1447 8 7 5.0199 2.0723 -1.9513 9 6 2.0701 2.1762 -3.7091 10 6 2.8228 1.5508 -4.8550 11 1 3.5419 0.7676 -4.6654 12 6 2.5927 1.9778 -6.1457 13 7 1.7160 2.9304 -6.3768 14 14 3.5264 1.2031 -7.5662 15 1 4.7821 1.9592 -7.8042 16 1 3.8531 -0.2068 -7.2335 17 1 2.6862 1.2410 -8.7900 18 6 1.5202 2.1199 1.1698 19 6 2.1214 1.5213 2.4431 20 1 1.9316 0.4491 2.4937 21 6 1.5761 2.2389 3.7017 22 6 2.8071 2.3830 4.6174 23 8 3.9138 1.7565 3.9473 24 6 3.6399 1.8190 2.5308 25 1 -0.3633 0.5224 0.8850 26 1 -0.3634 0.5052 -0.8949 27 1 -0.3633 -1.0276 0.0100 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8364 3.1410 -1.1383 31 1 0.6029 1.8997 -1.4633 32 1 2.2829 3.2447 -3.6746 33 1 1.0001 2.0232 -3.8506 34 1 1.2315 3.3329 -5.6391 35 1 1.8080 3.1682 1.0902 36 1 0.4337 2.0434 1.2102 37 1 1.1787 3.2195 3.4397 38 1 0.8101 1.6324 4.1849 39 1 3.0239 3.4381 4.7838 40 1 2.6210 1.8862 5.5696 41 1 4.2113 1.0610 1.9949 42 1 3.8593 2.8132 2.1412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609575026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:18 Heat of formation + Delta-G solvation = -34.246385 kcal Electronic energy + Delta-G solvation = -20607.190265 eV Core-core repulsion = 17586.720212 eV Total energy + Delta-G solvation = -3020.470052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85075 -38.35224 -36.02102 -33.97011 -32.95224 -31.72283 -30.20466 -29.12469 -26.54022 -25.13508 -23.87152 -22.72218 -22.06913 -21.03942 -19.75591 -17.16481 -17.00833 -16.62257 -15.84558 -15.75258 -15.28428 -14.94485 -14.29257 -14.13223 -13.76392 -13.47090 -13.35779 -12.97129 -12.78700 -12.29922 -12.12921 -12.10981 -11.78319 -11.65974 -11.57643 -11.48857 -11.29537 -11.14278 -11.05860 -10.83693 -10.67863 -10.53959 -10.22158 -10.13154 -9.88445 -9.78417 -8.67842 -8.41572 -8.23990 -6.44193 -4.15231 3.43309 3.45117 3.60740 3.65091 3.75147 3.79027 3.93934 4.42827 4.50272 4.54512 4.74161 4.81951 4.86913 5.03339 5.11780 5.14386 5.26708 5.32047 5.34564 5.40082 5.47573 5.50355 5.52293 5.62107 5.62736 5.72881 5.77854 5.86378 5.94504 5.97905 6.07529 6.19317 6.28782 6.36422 6.75490 7.05350 7.07688 7.09587 7.24189 8.02937 8.35131 8.54620 8.78638 9.55863 10.96633 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.004045 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.315635 B = 6920.659177 C = 7320.532307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 N -0.538 5.538 4 C 0.057 3.943 5 C 0.020 3.980 6 H 0.100 0.900 7 C 0.256 3.744 8 N -0.476 5.476 9 C 0.018 3.982 10 C -0.605 4.605 11 H 0.051 0.949 12 C 0.021 3.979 13 N -0.910 5.910 14 Si 1.068 2.932 15 H -0.288 1.288 16 H -0.287 1.287 17 H -0.283 1.283 18 C 0.061 3.939 19 C -0.116 4.116 20 H 0.087 0.913 21 C -0.152 4.152 22 C 0.048 3.952 23 O -0.385 6.385 24 C 0.063 3.937 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.027 0.973 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -3.260 18.680 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.085 4.085 3 N -0.261 5.261 4 C -0.071 4.071 5 C -0.002 4.002 6 H 0.118 0.882 7 C -0.061 4.061 8 N -0.153 5.153 9 C -0.021 4.021 10 C -0.643 4.643 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.545 5.545 14 Si 0.896 3.104 15 H -0.214 1.214 16 H -0.213 1.213 17 H -0.209 1.209 18 C -0.067 4.067 19 C -0.135 4.135 20 H 0.105 0.895 21 C -0.190 4.190 22 C -0.030 4.030 23 O -0.304 6.304 24 C -0.014 4.014 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.248 -2.963 17.458 18.003 hybrid contribution -1.738 0.009 1.395 2.229 sum -4.986 -2.954 18.853 19.724 Atomic orbital electron populations 1.22425 0.98281 1.02408 1.02155 1.22250 0.92902 0.90270 1.03080 1.62241 1.59451 1.02401 1.02007 1.22293 0.98093 0.98647 0.88099 1.19030 0.82409 1.02329 0.96407 0.88194 1.28771 0.94623 0.92245 0.90486 1.80988 1.12826 1.09970 1.11520 1.19283 0.97129 0.96039 0.89629 1.21989 1.25952 1.23455 0.92907 0.93056 1.25786 0.96833 0.95669 1.00090 1.70779 1.23896 1.24007 1.35854 0.83548 0.75791 0.75560 0.75477 1.21434 1.21339 1.20903 1.22122 0.97566 0.97860 0.89171 1.22732 0.96119 1.00976 0.93660 0.89502 1.22970 0.98515 1.01581 0.95972 1.23101 0.85882 0.97697 0.96272 1.88874 1.42499 1.80097 1.18894 1.23535 0.94560 1.01974 0.81301 0.92602 0.91840 0.92103 0.89990 0.90779 0.90535 0.92370 0.96580 0.95513 0.92055 0.90696 0.93667 0.90558 0.90602 0.92633 0.90226 0.88504 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 9.27 37.16 0.34 -1.53 16 2 C 0.04 0.47 5.70 -3.82 -0.02 0.45 16 3 N -0.54 -6.65 4.21 -234.63 -0.99 -7.64 16 4 C 0.06 0.81 4.23 -3.82 -0.02 0.79 16 5 C 0.02 0.37 2.22 -93.40 -0.21 0.16 16 6 H 0.10 1.74 6.55 -51.93 -0.34 1.40 16 7 C 0.26 5.33 13.63 -20.76 -0.28 5.05 16 8 N -0.48 -10.79 18.54 42.15 0.78 -10.01 16 9 C 0.02 0.40 3.73 -27.89 -0.10 0.30 16 10 C -0.60 -16.20 8.60 -34.44 -0.30 -16.50 16 11 H 0.05 1.39 7.59 -52.49 -0.40 0.99 16 12 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 13 N -0.91 -26.63 13.65 55.43 0.76 -25.87 16 14 Si 1.07 25.00 29.90 -169.99 -5.08 19.92 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.06 0.62 4.02 -3.82 -0.02 0.61 16 19 C -0.12 -1.14 3.03 -88.61 -0.27 -1.40 16 20 H 0.09 0.86 6.44 -51.93 -0.33 0.52 16 21 C -0.15 -1.23 6.60 -25.21 -0.17 -1.40 16 22 C 0.05 0.44 7.70 37.73 0.29 0.73 16 23 O -0.38 -4.93 11.52 -35.23 -0.41 -5.33 16 24 C 0.06 0.75 7.07 38.21 0.27 1.02 16 25 H 0.06 0.50 6.22 -51.93 -0.32 0.17 16 26 H 0.06 0.67 6.34 -51.93 -0.33 0.34 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.98 6.47 -51.93 -0.34 0.65 16 29 H 0.07 0.75 6.45 -51.93 -0.33 0.42 16 30 H 0.08 1.10 7.81 -51.93 -0.41 0.69 16 31 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 32 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 33 H 0.03 0.60 8.01 -51.93 -0.42 0.19 16 34 H 0.27 7.70 7.22 -40.82 -0.29 7.41 16 35 H 0.07 0.80 7.76 -51.93 -0.40 0.39 16 36 H 0.05 0.42 5.95 -51.93 -0.31 0.12 16 37 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 0.77 7.98 -51.92 -0.41 0.35 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -30.82 333.75 -7.16 -37.99 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.68 Total: -2.85 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.57 Total: -11.23 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.55 Total: -43.52 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.41 Total: -5.33 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.82 -7.16 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609575026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.742 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds