Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99794 * 2 1 4 4 O 1.21585 * 119.99720 * 179.97438 * 3 2 1 5 5 N 1.34772 * 120.00099 * 359.97438 * 3 2 1 6 6 C 1.46505 * 119.99936 * 179.72547 * 5 3 2 7 7 C 1.53000 * 109.46857 * 180.28048 * 6 5 3 8 8 C 1.50698 * 109.47052 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99999 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00441 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00321 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99384 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47237 * 90.00064 * 12 10 8 14 14 H 1.48508 * 109.47090 * 209.99538 * 12 10 8 15 15 H 1.48498 * 109.47541 * 329.99497 * 12 10 8 16 16 C 1.46497 * 120.00532 * 180.02562 * 2 1 3 17 17 C 1.53006 * 109.46906 * 294.16608 * 16 2 1 18 18 C 1.53003 * 117.49699 * 251.12706 * 17 16 2 19 19 C 1.52996 * 117.50089 * 182.46926 * 17 16 2 20 20 C 1.53004 * 109.47283 * 54.16057 * 16 2 1 21 21 C 1.52997 * 117.49841 * 128.75053 * 20 16 2 22 22 C 1.53003 * 117.49660 * 60.09018 * 20 16 2 23 23 H 1.08998 * 109.46811 * 84.61823 * 1 2 3 24 24 H 1.08996 * 109.46767 * 204.61646 * 1 2 3 25 25 H 1.09000 * 109.47246 * 324.61292 * 1 2 3 26 26 H 0.97002 * 120.00041 * 0.02562 * 5 3 2 27 27 H 1.09001 * 109.46659 * 300.27347 * 6 5 3 28 28 H 1.08996 * 109.47209 * 60.27710 * 6 5 3 29 29 H 1.09007 * 109.47189 * 299.99482 * 7 6 5 30 30 H 1.08996 * 109.47487 * 59.99832 * 7 6 5 31 31 H 0.96996 * 119.99884 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.47831 * 174.16800 * 16 2 1 33 33 H 1.08998 * 115.54815 * 36.79485 * 17 16 2 34 34 H 1.08990 * 117.49987 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49632 * 145.02131 * 18 17 16 36 36 H 1.08997 * 117.49960 * 214.98275 * 19 17 16 37 37 H 1.09004 * 117.49826 * 359.97234 * 19 17 16 38 38 H 1.09000 * 115.54783 * 274.42243 * 20 16 2 39 39 H 1.09001 * 117.49926 * 0.02562 * 21 20 16 40 40 H 1.09001 * 117.49679 * 145.02479 * 21 20 16 41 41 H 1.08996 * 117.49851 * 214.98359 * 22 20 16 42 42 H 1.09005 * 117.49618 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6032 0.0056 7 6 1.2032 4.7660 0.0106 8 6 1.9566 6.0711 0.0163 9 1 3.0366 6.0712 0.0166 10 6 1.2672 7.2652 0.0209 11 7 1.9247 8.4042 0.0253 12 14 -0.6008 7.2651 0.0210 13 1 -1.0957 7.2596 1.4210 14 1 -1.0959 8.4803 -0.6742 15 1 -1.0958 6.0553 -0.6838 16 6 2.1976 -1.2686 -0.0006 17 6 1.9412 -2.0062 1.3153 18 6 3.0963 -2.0894 2.3151 19 6 2.6685 -3.3343 1.5340 20 6 1.7212 -2.1322 -1.1703 21 6 2.7884 -2.7123 -2.1007 22 6 1.8937 -1.5671 -2.5817 23 1 -0.3633 0.0964 -1.0231 24 1 -0.3633 -0.9342 0.4281 25 1 -0.3634 0.8378 0.5951 26 1 0.4950 2.3344 -0.0005 27 1 2.8238 3.6568 0.8961 28 1 2.8244 3.6650 -0.8839 29 1 0.5768 4.7124 -0.8799 30 1 0.5762 4.7042 0.9001 31 1 1.4397 9.2441 0.0290 32 1 3.2646 -1.0721 -0.1049 33 1 0.9327 -1.9123 1.7180 34 1 4.0390 -1.6192 2.0354 35 1 2.8477 -2.0507 3.3757 36 1 2.1386 -4.1142 2.0809 37 1 3.3293 -3.6830 0.7403 38 1 0.8380 -2.7407 -0.9763 39 1 3.8299 -2.4791 -1.8791 40 1 2.6070 -3.7023 -2.5190 41 1 1.1242 -1.8042 -3.3163 42 1 2.3462 -0.5800 -2.6768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612166671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = 18.933418 kcal Electronic energy + Delta-G solvation = -20489.796196 eV Core-core repulsion = 17471.632193 eV Total energy + Delta-G solvation = -3018.164003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26990 -38.30689 -36.32475 -34.93448 -34.74622 -32.70184 -30.13903 -28.06244 -26.52313 -24.48499 -22.65749 -22.43716 -21.56045 -20.87012 -20.46894 -19.32078 -17.80422 -16.92493 -16.36550 -16.23323 -15.35644 -14.95166 -14.49759 -14.20515 -14.10561 -13.69906 -13.54474 -13.32467 -12.81710 -12.61809 -12.32817 -11.92432 -11.72098 -11.68937 -11.56196 -11.42623 -11.18342 -10.58534 -10.51891 -10.51201 -10.36567 -10.20499 -10.00736 -9.94263 -9.63858 -9.29924 -8.72569 -8.59986 -8.26830 -6.09221 -4.08997 2.76505 3.26206 3.33714 3.35142 3.49303 3.67460 3.76024 4.30908 4.36920 4.39232 4.66695 4.82700 4.83508 4.85364 4.93090 5.06005 5.19649 5.23726 5.23855 5.44715 5.49594 5.51387 5.56106 5.64477 5.77216 5.79785 5.95538 5.99658 6.02350 6.07584 6.18426 6.28070 6.58888 6.62315 6.86556 7.08354 7.27088 7.30422 7.69722 8.27886 8.47711 8.93360 8.96573 9.51025 11.03916 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.003859 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.247583 B = 7253.345469 C = 7409.623084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.626 5.626 3 C 0.703 3.297 4 O -0.595 6.595 5 N -0.741 5.741 6 C 0.148 3.852 7 C -0.021 4.021 8 C -0.521 4.521 9 H 0.076 0.924 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.882 3.118 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.219 3.781 17 C -0.162 4.162 18 C -0.174 4.174 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.172 4.172 22 C -0.170 4.170 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.391 0.609 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -24.843 -0.333 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.404 3.596 4 O -0.473 6.473 5 N -0.396 5.396 6 C 0.025 3.975 7 C -0.059 4.059 8 C -0.560 4.560 9 H 0.094 0.906 10 C -0.133 4.133 11 N -0.537 5.537 12 Si 0.709 3.291 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.191 1.191 16 C 0.115 3.885 17 C -0.181 4.181 18 C -0.211 4.211 19 C -0.208 4.208 20 C -0.179 4.179 21 C -0.210 4.210 22 C -0.207 4.207 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.226 0.774 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.981 -24.570 -0.336 24.893 hybrid contribution -1.662 0.191 0.072 1.674 sum -5.642 -24.379 -0.264 25.025 Atomic orbital electron populations 1.21614 0.80432 1.02633 1.01505 1.46964 1.05965 1.04470 1.78947 1.15956 0.85395 0.80385 0.77873 1.90876 1.11661 1.86192 1.58597 1.45638 1.09812 1.05411 1.78702 1.21368 0.95057 0.79651 1.01437 1.19789 0.95483 0.93906 0.96714 1.20924 0.95293 0.88261 1.51487 0.90589 1.24997 0.98451 0.95422 0.94418 1.69904 1.35837 0.97458 1.50540 0.86752 0.86130 0.77708 0.78477 1.20249 1.21289 1.19106 1.19932 0.97406 0.80788 0.90417 1.22584 0.97665 1.00172 0.97690 1.23016 0.99267 1.01507 0.97299 1.22889 1.03749 0.90949 1.03224 1.22542 1.01265 1.02762 0.91307 1.22985 0.96452 0.98091 1.03425 1.22871 1.02786 0.98665 0.96347 0.92788 0.91029 0.91745 0.77432 0.92228 0.92191 0.96078 0.96542 0.92575 0.87997 0.87841 0.88452 0.88970 0.88952 0.88581 0.87729 0.88709 0.88784 0.88946 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.19 59.85 0.55 1.34 16 2 N -0.63 -8.20 2.64 -179.67 -0.47 -8.68 16 3 C 0.70 12.36 8.28 -86.92 -0.72 11.64 16 4 O -0.59 -12.75 15.68 5.29 0.08 -12.66 16 5 N -0.74 -12.95 5.42 -65.22 -0.35 -13.30 16 6 C 0.15 3.13 5.61 -4.04 -0.02 3.10 16 7 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 8 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 9 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 12 Si 0.88 21.15 27.47 -169.99 -4.67 16.49 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 16 C 0.22 2.55 2.40 -67.93 -0.16 2.39 16 17 C -0.16 -1.61 5.11 -90.62 -0.46 -2.08 16 18 C -0.17 -1.78 10.18 -26.69 -0.27 -2.05 16 19 C -0.17 -1.42 9.95 -26.70 -0.27 -1.69 16 20 C -0.16 -1.51 4.38 -90.62 -0.40 -1.90 16 21 C -0.17 -1.53 10.18 -26.69 -0.27 -1.80 16 22 C -0.17 -1.72 10.13 -26.69 -0.27 -1.99 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.54 6.91 -51.93 -0.36 0.19 16 25 H 0.06 0.60 6.66 -51.93 -0.35 0.26 16 26 H 0.39 5.80 6.32 -40.82 -0.26 5.54 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 30 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.10 1.47 6.45 -51.93 -0.34 1.14 16 33 H 0.10 0.97 7.06 -51.93 -0.37 0.60 16 34 H 0.10 1.13 8.06 -51.93 -0.42 0.71 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -32.50 342.61 -9.40 -41.90 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.08 Total: 4.71 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.84 Total: -6.85 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.06 Total: -48.74 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.50 -9.40 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612166671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.834 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds