Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99794 * 2 1 4 4 O 1.21585 * 119.99720 * 179.97438 * 3 2 1 5 5 N 1.34772 * 120.00099 * 359.97438 * 3 2 1 6 6 C 1.46505 * 119.99936 * 179.72547 * 5 3 2 7 7 C 1.53000 * 109.46857 * 180.28048 * 6 5 3 8 8 C 1.50698 * 109.47052 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99999 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00441 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00321 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99384 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47237 * 90.00064 * 12 10 8 14 14 H 1.48508 * 109.47090 * 209.99538 * 12 10 8 15 15 H 1.48498 * 109.47541 * 329.99497 * 12 10 8 16 16 C 1.46497 * 120.00532 * 180.02562 * 2 1 3 17 17 C 1.53006 * 109.46906 * 294.16608 * 16 2 1 18 18 C 1.53003 * 117.49699 * 251.12706 * 17 16 2 19 19 C 1.52996 * 117.50089 * 182.46926 * 17 16 2 20 20 C 1.53004 * 109.47283 * 54.16057 * 16 2 1 21 21 C 1.52997 * 117.49841 * 128.75053 * 20 16 2 22 22 C 1.53003 * 117.49660 * 60.09018 * 20 16 2 23 23 H 1.08998 * 109.46811 * 84.61823 * 1 2 3 24 24 H 1.08996 * 109.46767 * 204.61646 * 1 2 3 25 25 H 1.09000 * 109.47246 * 324.61292 * 1 2 3 26 26 H 0.97002 * 120.00041 * 0.02562 * 5 3 2 27 27 H 1.09001 * 109.46659 * 300.27347 * 6 5 3 28 28 H 1.08996 * 109.47209 * 60.27710 * 6 5 3 29 29 H 1.09007 * 109.47189 * 299.99482 * 7 6 5 30 30 H 1.08996 * 109.47487 * 59.99832 * 7 6 5 31 31 H 0.96996 * 119.99884 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.47831 * 174.16800 * 16 2 1 33 33 H 1.08998 * 115.54815 * 36.79485 * 17 16 2 34 34 H 1.08990 * 117.49987 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49632 * 145.02131 * 18 17 16 36 36 H 1.08997 * 117.49960 * 214.98275 * 19 17 16 37 37 H 1.09004 * 117.49826 * 359.97234 * 19 17 16 38 38 H 1.09000 * 115.54783 * 274.42243 * 20 16 2 39 39 H 1.09001 * 117.49926 * 0.02562 * 21 20 16 40 40 H 1.09001 * 117.49679 * 145.02479 * 21 20 16 41 41 H 1.08996 * 117.49851 * 214.98359 * 22 20 16 42 42 H 1.09005 * 117.49618 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6032 0.0056 7 6 1.2032 4.7660 0.0106 8 6 1.9566 6.0711 0.0163 9 1 3.0366 6.0712 0.0166 10 6 1.2672 7.2652 0.0209 11 7 1.9247 8.4042 0.0253 12 14 -0.6008 7.2651 0.0210 13 1 -1.0957 7.2596 1.4210 14 1 -1.0959 8.4803 -0.6742 15 1 -1.0958 6.0553 -0.6838 16 6 2.1976 -1.2686 -0.0006 17 6 1.9412 -2.0062 1.3153 18 6 3.0963 -2.0894 2.3151 19 6 2.6685 -3.3343 1.5340 20 6 1.7212 -2.1322 -1.1703 21 6 2.7884 -2.7123 -2.1007 22 6 1.8937 -1.5671 -2.5817 23 1 -0.3633 0.0964 -1.0231 24 1 -0.3633 -0.9342 0.4281 25 1 -0.3634 0.8378 0.5951 26 1 0.4950 2.3344 -0.0005 27 1 2.8238 3.6568 0.8961 28 1 2.8244 3.6650 -0.8839 29 1 0.5768 4.7124 -0.8799 30 1 0.5762 4.7042 0.9001 31 1 1.4397 9.2441 0.0290 32 1 3.2646 -1.0721 -0.1049 33 1 0.9327 -1.9123 1.7180 34 1 4.0390 -1.6192 2.0354 35 1 2.8477 -2.0507 3.3757 36 1 2.1386 -4.1142 2.0809 37 1 3.3293 -3.6830 0.7403 38 1 0.8380 -2.7407 -0.9763 39 1 3.8299 -2.4791 -1.8791 40 1 2.6070 -3.7023 -2.5190 41 1 1.1242 -1.8042 -3.3163 42 1 2.3462 -0.5800 -2.6768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612166671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = -1.183337 kcal Electronic energy + Delta-G solvation = -20490.668524 eV Core-core repulsion = 17471.632193 eV Total energy + Delta-G solvation = -3019.036331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46317 -39.36077 -37.07820 -36.62749 -35.90000 -34.70983 -31.96375 -29.03837 -27.68965 -26.22825 -23.43355 -23.16866 -22.71835 -22.34448 -21.70910 -20.33180 -19.09475 -18.97321 -17.57273 -17.15774 -16.52527 -16.28677 -16.00771 -15.49015 -15.38577 -15.15600 -14.69142 -14.59277 -14.29202 -13.89775 -13.43744 -13.07153 -13.04484 -12.68716 -12.57842 -12.43183 -12.34785 -12.17650 -12.15635 -11.75944 -11.57034 -11.45698 -11.29165 -11.26070 -10.98135 -10.79398 -10.78871 -10.17436 -9.46315 -8.30002 -6.37565 1.38997 1.42077 1.53389 1.60216 2.13490 2.37182 2.81891 2.93483 3.04875 3.17598 3.53136 3.88914 4.06126 4.07651 4.11713 4.15276 4.28068 4.32291 4.38973 4.42748 4.49075 4.70943 4.71822 4.73921 4.77728 4.81200 4.91291 5.02028 5.05059 5.12465 5.19150 5.24884 5.28762 5.35205 5.39957 5.43623 5.59469 5.67491 5.98524 6.22847 6.69297 7.01244 7.26875 7.57779 8.86964 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.003859 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.247583 B = 7253.345469 C = 7409.623084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.616 5.616 3 C 0.696 3.304 4 O -0.643 6.643 5 N -0.731 5.731 6 C 0.165 3.835 7 C -0.009 4.009 8 C -0.540 4.540 9 H 0.027 0.973 10 C 0.004 3.996 11 N -0.951 5.951 12 Si 0.960 3.040 13 H -0.264 1.264 14 H -0.286 1.286 15 H -0.237 1.237 16 C 0.215 3.785 17 C -0.164 4.164 18 C -0.196 4.196 19 C -0.144 4.144 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.180 4.180 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.408 0.592 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.268 0.732 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 -27.779 -0.299 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.352 5.352 3 C 0.398 3.602 4 O -0.525 6.525 5 N -0.388 5.388 6 C 0.040 3.960 7 C -0.047 4.047 8 C -0.579 4.579 9 H 0.046 0.954 10 C -0.193 4.193 11 N -0.591 5.591 12 Si 0.782 3.218 13 H -0.189 1.189 14 H -0.212 1.212 15 H -0.160 1.160 16 C 0.111 3.889 17 C -0.183 4.183 18 C -0.233 4.233 19 C -0.182 4.182 20 C -0.167 4.167 21 C -0.202 4.202 22 C -0.217 4.217 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.246 0.754 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.150 0.850 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.917 -27.572 -0.302 28.688 hybrid contribution -0.301 1.092 0.058 1.134 sum -8.218 -26.480 -0.245 27.728 Atomic orbital electron populations 1.21935 0.77643 1.04599 1.02777 1.47014 1.07621 1.03287 1.77231 1.16162 0.84926 0.81451 0.77709 1.90847 1.14056 1.87020 1.60614 1.45246 1.10396 1.04170 1.78969 1.20860 0.94518 0.81123 0.99493 1.19621 0.95390 0.91683 0.98001 1.21241 0.93718 0.91206 1.51685 0.95441 1.26091 1.05064 0.94542 0.93583 1.70077 1.38602 0.98481 1.51922 0.85520 0.77990 0.78857 0.79396 1.18891 1.21161 1.15950 1.20009 0.95421 0.80669 0.92777 1.22563 0.98146 1.01204 0.96355 1.23014 0.98597 1.03671 0.98022 1.22966 1.02532 0.90370 1.02311 1.22521 1.02233 1.02278 0.89713 1.23051 0.95583 0.98806 1.02747 1.22818 1.03795 0.97483 0.97583 0.91560 0.88049 0.91142 0.75436 0.94336 0.94344 0.94506 0.94633 0.92288 0.91816 0.86206 0.91036 0.88209 0.86552 0.88384 0.84975 0.90175 0.86166 0.87026 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 9.19 127.77 1.17 2.32 16 2 N -0.62 -15.39 2.64 -840.61 -2.22 -17.61 16 3 C 0.70 24.77 8.28 179.05 1.48 26.25 16 4 O -0.64 -29.10 15.68 -3.98 -0.06 -29.17 16 5 N -0.73 -25.17 5.42 -478.53 -2.59 -27.76 16 6 C 0.16 7.15 5.61 86.38 0.48 7.64 16 7 C -0.01 -0.42 4.16 29.85 0.12 -0.29 16 8 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 9 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 10 C 0.00 0.25 5.47 84.66 0.46 0.71 16 11 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 12 Si 0.96 42.54 27.47 68.60 1.88 44.43 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 16 C 0.22 4.82 2.40 45.00 0.11 4.93 16 17 C -0.16 -2.90 5.11 -10.79 -0.06 -2.96 16 18 C -0.20 -3.90 10.18 30.62 0.31 -3.59 16 19 C -0.14 -2.03 9.95 30.62 0.30 -1.73 16 20 C -0.15 -2.44 4.38 -10.79 -0.05 -2.48 16 21 C -0.16 -2.65 10.18 30.62 0.31 -2.33 16 22 C -0.18 -3.40 10.13 30.62 0.31 -3.09 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.10 1.04 6.91 -2.39 -0.02 1.03 16 25 H 0.07 1.06 6.66 -2.39 -0.02 1.04 16 26 H 0.41 11.13 6.32 -92.71 -0.59 10.54 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.58 7.20 -2.38 -0.02 1.56 16 30 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 31 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.06 1.94 6.45 -2.39 -0.02 1.93 16 33 H 0.12 1.77 7.06 -2.39 -0.02 1.76 16 34 H 0.07 1.78 8.06 -2.39 -0.02 1.76 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.13 1.53 8.11 -2.39 -0.02 1.51 16 39 H 0.08 1.53 8.05 -2.39 -0.02 1.51 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -75.30 342.61 2.88 -72.43 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.35 Total: 23.13 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.22 Total: -5.85 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -4.52 Total: -104.97 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.17 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.43 kcal Total: -75.30 2.88 -72.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612166671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.244 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds