Wall clock time and date at job start Mon Mar 30 2020 01:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46838 * 111.00373 * 2 1 4 4 C 1.53039 * 109.52531 * 185.84152 * 3 2 1 5 5 C 1.53124 * 109.27873 * 300.81763 * 4 3 2 6 6 C 1.53123 * 109.15396 * 57.65335 * 5 4 3 7 7 C 1.46847 * 110.99732 * 124.21168 * 2 1 3 8 8 H 1.08998 * 109.45816 * 294.16687 * 7 2 1 9 9 C 1.50700 * 109.46800 * 54.14229 * 7 2 1 10 10 O 1.21289 * 119.99555 * 20.04919 * 9 7 2 11 11 N 1.34769 * 120.00175 * 200.05326 * 9 7 2 12 12 C 1.46507 * 119.99724 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46762 * 177.46756 * 12 11 9 14 14 C 1.50699 * 115.55319 * 294.83147 * 13 12 11 15 15 H 1.07995 * 120.00093 * 94.85545 * 14 13 12 16 16 C 1.37887 * 119.99978 * 275.13536 * 14 13 12 17 17 N 1.31513 * 119.99701 * 6.46431 * 16 14 13 18 18 Si 1.86794 * 120.00062 * 186.46045 * 16 14 13 19 19 H 1.48506 * 109.47040 * 59.99871 * 18 16 14 20 20 H 1.48491 * 109.47110 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47253 * 300.00370 * 18 16 14 22 22 C 1.53002 * 117.49876 * 80.50615 * 13 12 11 23 23 C 1.53000 * 117.49677 * 149.16304 * 13 12 11 24 24 H 1.09006 * 109.47135 * 295.79283 * 1 2 3 25 25 H 1.08998 * 109.47427 * 55.79165 * 1 2 3 26 26 H 1.09001 * 109.47945 * 175.79190 * 1 2 3 27 27 H 1.08996 * 109.46726 * 65.82198 * 3 2 1 28 28 H 1.09008 * 109.45366 * 305.85044 * 3 2 1 29 29 H 1.08999 * 109.50270 * 180.88042 * 4 3 2 30 30 H 1.08993 * 109.50552 * 60.75990 * 4 3 2 31 31 H 1.08995 * 109.51967 * 297.75460 * 5 4 3 32 32 H 1.08995 * 109.57707 * 177.59241 * 5 4 3 33 33 H 1.09009 * 109.49952 * 182.40465 * 6 5 4 34 34 H 1.08997 * 109.50504 * 62.29219 * 6 5 4 35 35 H 0.96997 * 120.00410 * 359.97438 * 11 9 7 36 36 H 1.08999 * 109.47075 * 57.47145 * 12 11 9 37 37 H 1.08997 * 109.47386 * 297.46397 * 12 11 9 38 38 H 0.97001 * 119.99694 * 185.02405 * 17 16 14 39 39 H 1.09004 * 117.49818 * 215.00275 * 22 13 12 40 40 H 1.08994 * 117.49656 * 0.02562 * 22 13 12 41 41 H 1.08997 * 117.50237 * 359.97322 * 23 13 12 42 42 H 1.09000 * 117.50066 * 144.97617 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5181 1.3340 -0.1468 5 6 4.1189 0.5368 1.0144 6 6 3.5180 -0.8716 1.0208 7 6 1.9951 -0.7708 1.1337 8 1 1.7324 -0.2708 2.0659 9 6 1.3981 -2.1544 1.1207 10 8 0.9171 -2.5977 0.0992 11 7 1.3985 -2.8992 2.2439 12 6 0.8175 -4.2441 2.2312 13 6 1.0024 -4.8924 3.6047 14 6 2.4287 -5.1619 4.0096 15 1 2.9629 -4.4448 4.6152 16 6 3.0537 -6.3215 3.6020 17 7 2.4523 -7.1307 2.7575 18 14 4.7545 -6.7429 4.2491 19 1 4.7056 -6.8626 5.7286 20 1 5.2017 -8.0320 3.6632 21 1 5.7082 -5.6693 3.8708 22 6 0.0163 -4.5034 4.7080 23 6 -0.0629 -5.8898 4.0642 24 1 -0.3634 0.4472 0.9253 25 1 -0.3634 0.5777 -0.8498 26 1 -0.3635 -1.0248 -0.0754 27 1 1.7325 1.8608 0.9375 28 1 1.5634 1.9255 -0.8331 29 1 3.9099 2.3510 -0.1311 30 1 3.7813 0.8566 -1.0906 31 1 3.8887 1.0353 1.9559 32 1 5.1999 0.4712 0.8916 33 1 3.9098 -1.4305 1.8708 34 1 3.7812 -1.3838 0.0953 35 1 1.7834 -2.5449 3.0606 36 1 1.3169 -4.8485 1.4740 37 1 -0.2458 -4.1784 2.0006 38 1 2.8590 -7.9806 2.5271 39 1 0.3993 -4.4423 5.7267 40 1 -0.7643 -3.7860 4.4552 41 1 -0.8956 -6.0839 3.3882 42 1 0.2680 -6.7412 4.6590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619545049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:51 Heat of formation + Delta-G solvation = -17.220579 kcal Electronic energy + Delta-G solvation = -21099.243925 eV Core-core repulsion = 18079.512167 eV Total energy + Delta-G solvation = -3019.731758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.96805 -37.81773 -36.55144 -33.68209 -33.04420 -31.98917 -31.07685 -27.07314 -26.18549 -25.24501 -23.43836 -22.71961 -21.22743 -20.07755 -19.58198 -19.13639 -16.92869 -16.13355 -15.67441 -15.17245 -14.83832 -14.59860 -14.35883 -14.30262 -14.06598 -13.48160 -13.28562 -13.00778 -12.73360 -12.46993 -12.17016 -11.71233 -11.62336 -11.48162 -11.28319 -11.06649 -10.89824 -10.84076 -10.67154 -10.55688 -10.39593 -10.29364 -9.66142 -9.10353 -8.96362 -8.48933 -8.33284 -8.18299 -8.04879 -6.09706 -4.18073 3.20248 3.26409 3.32984 3.33783 3.60881 4.16054 4.35451 4.77530 4.86091 4.90972 5.16986 5.19495 5.23112 5.25973 5.41923 5.48848 5.54046 5.56950 5.66839 5.73365 5.87765 5.95320 6.01449 6.07881 6.15556 6.22935 6.31289 6.38023 6.45114 6.54565 6.66341 6.86674 7.03927 7.07479 7.15708 7.30009 7.42334 7.47509 7.79898 8.31900 8.32438 8.82638 8.92762 9.49300 10.98924 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.005520 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.781047 B = 5071.232257 C = 5873.978477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.057 3.943 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.109 4.109 7 C 0.072 3.928 8 H 0.056 0.944 9 C 0.508 3.492 10 O -0.538 6.538 11 N -0.703 5.703 12 C 0.164 3.836 13 C 0.028 3.972 14 C -0.500 4.500 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.873 5.873 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.017 0.983 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 14.935 -1.700 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.040 4.040 8 H 0.074 0.926 9 C 0.292 3.708 10 O -0.415 6.415 11 N -0.352 5.352 12 C 0.041 3.959 13 C 0.027 3.973 14 C -0.537 4.537 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.509 5.509 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.092 14.201 -3.024 14.520 hybrid contribution 0.768 0.144 1.538 1.725 sum 0.676 14.345 -1.486 14.438 Atomic orbital electron populations 1.22577 0.86759 1.04420 0.99448 1.61613 1.08164 1.12509 1.42177 1.22123 0.95704 0.89034 1.00274 1.21613 0.94442 0.99913 0.99653 1.21578 1.00122 0.95491 0.98453 1.21552 0.91727 0.97559 1.03836 1.21593 0.96493 0.92912 0.93017 0.92642 1.20250 0.79863 0.86797 0.83887 1.90631 1.46357 1.72769 1.31790 1.45985 1.59953 1.17337 1.11890 1.20997 0.94735 0.80671 0.99482 1.19047 0.91779 0.97601 0.88868 1.20297 0.94993 1.05490 1.32919 0.92288 1.24963 0.97501 0.96671 0.93852 1.69999 1.39570 1.10219 1.31082 0.86728 0.84683 0.77823 0.79182 1.20267 1.21258 1.20174 1.23022 1.03849 0.98977 0.98979 1.22486 1.00899 0.92267 1.02996 0.96450 0.91646 0.89004 0.95156 0.90650 0.91645 0.90906 0.92162 0.91381 0.90441 0.90347 0.76858 0.90717 0.94766 0.92794 0.90336 0.91705 0.91682 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.09 60.06 0.55 0.77 16 2 N -0.52 -7.54 4.51 -236.33 -1.07 -8.61 16 3 C 0.06 0.63 5.46 -3.84 -0.02 0.61 16 4 C -0.12 -1.20 6.09 -26.65 -0.16 -1.37 16 5 C -0.12 -1.27 6.00 -26.60 -0.16 -1.43 16 6 C -0.11 -1.49 5.36 -26.65 -0.14 -1.63 16 7 C 0.07 1.08 2.24 -68.87 -0.15 0.92 16 8 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 9 C 0.51 9.65 6.26 -10.99 -0.07 9.58 16 10 O -0.54 -12.13 14.53 5.55 0.08 -12.05 16 11 N -0.70 -13.64 5.47 -60.29 -0.33 -13.97 16 12 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 13 C 0.03 0.65 1.36 -155.66 -0.21 0.44 16 14 C -0.50 -12.72 8.68 -34.44 -0.30 -13.02 16 15 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 16 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 17 N -0.87 -24.21 12.94 55.43 0.72 -23.49 16 18 Si 0.89 20.45 29.55 -169.99 -5.02 15.43 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16 23 C -0.15 -3.35 9.45 -26.69 -0.25 -3.61 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.09 1.56 5.63 -51.93 -0.29 1.27 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.76 8.09 -51.92 -0.42 0.34 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.40 7.04 8.42 -40.82 -0.34 6.69 16 36 H 0.07 1.97 8.14 -51.93 -0.42 1.55 16 37 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -29.05 337.60 -9.20 -38.25 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.36 Total: 7.10 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.31 Total: -7.75 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.68 Total: -46.07 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.05 -9.20 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619545049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.028 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds