Wall clock time and date at job start Mon Mar 30 2020 01:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46838 * 111.00373 * 2 1 4 4 C 1.53039 * 109.52531 * 185.84152 * 3 2 1 5 5 C 1.53124 * 109.27873 * 300.81763 * 4 3 2 6 6 C 1.53123 * 109.15396 * 57.65335 * 5 4 3 7 7 C 1.46847 * 110.99732 * 124.21168 * 2 1 3 8 8 H 1.08998 * 109.45816 * 294.16687 * 7 2 1 9 9 C 1.50700 * 109.46800 * 54.14229 * 7 2 1 10 10 O 1.21289 * 119.99555 * 20.04919 * 9 7 2 11 11 N 1.34769 * 120.00175 * 200.05326 * 9 7 2 12 12 C 1.46507 * 119.99724 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46762 * 177.46756 * 12 11 9 14 14 C 1.50699 * 115.55319 * 294.83147 * 13 12 11 15 15 H 1.07995 * 120.00093 * 94.85545 * 14 13 12 16 16 C 1.37887 * 119.99978 * 275.13536 * 14 13 12 17 17 N 1.31513 * 119.99701 * 6.46431 * 16 14 13 18 18 Si 1.86794 * 120.00062 * 186.46045 * 16 14 13 19 19 H 1.48506 * 109.47040 * 59.99871 * 18 16 14 20 20 H 1.48491 * 109.47110 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47253 * 300.00370 * 18 16 14 22 22 C 1.53002 * 117.49876 * 80.50615 * 13 12 11 23 23 C 1.53000 * 117.49677 * 149.16304 * 13 12 11 24 24 H 1.09006 * 109.47135 * 295.79283 * 1 2 3 25 25 H 1.08998 * 109.47427 * 55.79165 * 1 2 3 26 26 H 1.09001 * 109.47945 * 175.79190 * 1 2 3 27 27 H 1.08996 * 109.46726 * 65.82198 * 3 2 1 28 28 H 1.09008 * 109.45366 * 305.85044 * 3 2 1 29 29 H 1.08999 * 109.50270 * 180.88042 * 4 3 2 30 30 H 1.08993 * 109.50552 * 60.75990 * 4 3 2 31 31 H 1.08995 * 109.51967 * 297.75460 * 5 4 3 32 32 H 1.08995 * 109.57707 * 177.59241 * 5 4 3 33 33 H 1.09009 * 109.49952 * 182.40465 * 6 5 4 34 34 H 1.08997 * 109.50504 * 62.29219 * 6 5 4 35 35 H 0.96997 * 120.00410 * 359.97438 * 11 9 7 36 36 H 1.08999 * 109.47075 * 57.47145 * 12 11 9 37 37 H 1.08997 * 109.47386 * 297.46397 * 12 11 9 38 38 H 0.97001 * 119.99694 * 185.02405 * 17 16 14 39 39 H 1.09004 * 117.49818 * 215.00275 * 22 13 12 40 40 H 1.08994 * 117.49656 * 0.02562 * 22 13 12 41 41 H 1.08997 * 117.50237 * 359.97322 * 23 13 12 42 42 H 1.09000 * 117.50066 * 144.97617 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5181 1.3340 -0.1468 5 6 4.1189 0.5368 1.0144 6 6 3.5180 -0.8716 1.0208 7 6 1.9951 -0.7708 1.1337 8 1 1.7324 -0.2708 2.0659 9 6 1.3981 -2.1544 1.1207 10 8 0.9171 -2.5977 0.0992 11 7 1.3985 -2.8992 2.2439 12 6 0.8175 -4.2441 2.2312 13 6 1.0024 -4.8924 3.6047 14 6 2.4287 -5.1619 4.0096 15 1 2.9629 -4.4448 4.6152 16 6 3.0537 -6.3215 3.6020 17 7 2.4523 -7.1307 2.7575 18 14 4.7545 -6.7429 4.2491 19 1 4.7056 -6.8626 5.7286 20 1 5.2017 -8.0320 3.6632 21 1 5.7082 -5.6693 3.8708 22 6 0.0163 -4.5034 4.7080 23 6 -0.0629 -5.8898 4.0642 24 1 -0.3634 0.4472 0.9253 25 1 -0.3634 0.5777 -0.8498 26 1 -0.3635 -1.0248 -0.0754 27 1 1.7325 1.8608 0.9375 28 1 1.5634 1.9255 -0.8331 29 1 3.9099 2.3510 -0.1311 30 1 3.7813 0.8566 -1.0906 31 1 3.8887 1.0353 1.9559 32 1 5.1999 0.4712 0.8916 33 1 3.9098 -1.4305 1.8708 34 1 3.7812 -1.3838 0.0953 35 1 1.7834 -2.5449 3.0606 36 1 1.3169 -4.8485 1.4740 37 1 -0.2458 -4.1784 2.0006 38 1 2.8590 -7.9806 2.5271 39 1 0.3993 -4.4423 5.7267 40 1 -0.7643 -3.7860 4.4552 41 1 -0.8956 -6.0839 3.3882 42 1 0.2680 -6.7412 4.6590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619545049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:50 Heat of formation + Delta-G solvation = -36.108481 kcal Electronic energy + Delta-G solvation = -21100.062966 eV Core-core repulsion = 18079.512167 eV Total energy + Delta-G solvation = -3020.550799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30990 -39.20474 -38.23009 -35.09441 -34.30542 -33.96778 -32.16983 -28.44746 -27.68522 -27.03686 -24.60915 -23.75846 -22.96992 -21.39540 -21.18196 -20.54147 -18.48613 -17.81280 -17.04963 -16.66673 -16.37500 -16.12091 -15.65975 -15.56213 -15.33896 -14.98569 -14.63218 -14.28414 -13.97097 -13.81307 -13.58209 -13.45498 -13.03015 -12.93610 -12.76218 -12.64762 -12.40278 -12.32558 -12.04841 -11.82562 -11.61519 -11.50356 -11.31010 -10.82850 -10.65028 -10.44046 -10.04226 -9.81389 -9.25749 -8.10749 -6.23487 1.43810 1.44655 1.51496 1.69758 2.23074 2.43543 2.98813 3.18882 3.47272 3.76371 3.85352 3.99399 4.10207 4.19054 4.23517 4.32569 4.46920 4.54067 4.54363 4.60921 4.64445 4.70779 4.77437 4.83918 4.97857 4.98785 5.03095 5.07308 5.09167 5.19340 5.25505 5.26570 5.46935 5.57389 5.59872 5.68057 5.77948 5.96614 6.17884 6.35943 6.78026 6.84986 7.39986 7.46760 8.97607 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.005520 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.781047 B = 5071.232257 C = 5873.978477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.108 4.108 7 C 0.081 3.919 8 H 0.078 0.922 9 C 0.504 3.496 10 O -0.578 6.578 11 N -0.698 5.698 12 C 0.182 3.818 13 C 0.004 3.996 14 C -0.502 4.502 15 H 0.064 0.936 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.947 3.053 19 H -0.269 1.269 20 H -0.293 1.293 21 H -0.270 1.270 22 C -0.175 4.175 23 C -0.160 4.160 24 H 0.031 0.969 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.408 0.592 36 H 0.027 0.973 37 H 0.033 0.967 38 H 0.258 0.742 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 17.761 -0.410 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.147 4.147 7 C -0.030 4.030 8 H 0.096 0.904 9 C 0.291 3.709 10 O -0.458 6.458 11 N -0.347 5.347 12 C 0.057 3.943 13 C 0.003 3.997 14 C -0.540 4.540 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.546 5.546 18 Si 0.773 3.227 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.195 1.195 22 C -0.212 4.212 23 C -0.198 4.198 24 H 0.050 0.950 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.244 0.756 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.669 17.065 -1.704 17.163 hybrid contribution 0.494 -0.718 1.100 1.403 sum 1.162 16.347 -0.605 16.400 Atomic orbital electron populations 1.22473 0.86834 1.02534 1.00958 1.61600 1.08384 1.14660 1.42156 1.22253 0.96276 0.87073 1.01567 1.21632 0.93783 1.01293 0.98683 1.21572 1.00624 0.93245 0.99574 1.21569 0.90979 0.99747 1.02384 1.21536 0.96832 0.90212 0.94457 0.90394 1.21088 0.78802 0.88231 0.82822 1.90613 1.47990 1.74034 1.33210 1.45872 1.59943 1.16154 1.12760 1.20538 0.94140 0.81691 0.97912 1.19075 0.91552 0.99081 0.90001 1.20637 0.96068 1.05249 1.32020 0.91753 1.25693 1.00754 0.96957 0.94200 1.70135 1.41213 1.10536 1.32693 0.85790 0.80820 0.77255 0.78843 1.19374 1.21882 1.19542 1.23009 1.02472 0.97408 0.98272 1.22430 1.01000 0.92808 1.03606 0.95043 0.89921 0.92600 0.93690 0.89387 0.88754 0.92277 0.90466 0.90183 0.90699 0.92904 0.75625 0.95438 0.94868 0.93280 0.89385 0.89288 0.91234 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.09 127.69 1.16 1.70 16 2 N -0.54 -14.92 4.51 -901.62 -4.06 -18.98 16 3 C 0.06 1.06 5.46 86.33 0.47 1.53 16 4 C -0.12 -1.99 6.09 30.65 0.19 -1.80 16 5 C -0.11 -2.06 6.00 30.68 0.18 -1.88 16 6 C -0.11 -2.84 5.36 30.65 0.16 -2.68 16 7 C 0.08 2.33 2.24 44.19 0.10 2.43 16 8 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 9 C 0.50 19.33 6.26 87.66 0.55 19.88 16 10 O -0.58 -27.05 14.53 -3.06 -0.04 -27.10 16 11 N -0.70 -27.09 5.47 -463.05 -2.53 -29.62 16 12 C 0.18 8.43 5.50 86.38 0.48 8.90 16 13 C 0.00 0.17 1.36 -52.93 -0.07 0.10 16 14 C -0.50 -25.46 8.68 25.60 0.22 -25.24 16 15 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 16 C 0.02 1.31 5.39 84.66 0.46 1.76 16 17 N -0.91 -51.81 12.94 21.45 0.28 -51.53 16 18 Si 0.95 42.08 29.55 68.60 2.03 44.11 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.17 -6.81 9.96 30.62 0.30 -6.51 16 23 C -0.16 -7.26 9.45 30.62 0.29 -6.97 16 24 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 26 H 0.06 1.92 5.63 -2.39 -0.01 1.91 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 1.48 8.09 -2.38 -0.02 1.46 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 14.00 8.42 -92.71 -0.78 13.22 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 39 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -64.36 337.60 0.36 -64.00 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.20 Total: 27.91 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.49 Total: -8.78 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -6.32 Total: -100.14 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.10 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.36 0.36 -64.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619545049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.889 kcal (2) G-P(sol) polarization free energy of solvation -64.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds