Wall clock time and date at job start Mon Mar 30 2020 00:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99410 * 2 1 4 4 N 1.34772 * 120.00492 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.62742 * 4.98240 * 4 2 1 6 6 C 1.53189 * 108.77126 * 233.63018 * 5 4 2 7 7 C 1.53042 * 109.31736 * 305.36332 * 6 5 4 8 8 N 1.46900 * 109.46306 * 181.38496 * 7 6 5 9 9 C 1.46899 * 110.99947 * 154.99983 * 8 7 6 10 10 C 1.52994 * 109.47184 * 185.39842 * 9 8 7 11 11 C 1.50703 * 115.54979 * 304.52936 * 10 9 8 12 12 H 1.08002 * 119.99153 * 95.14025 * 11 10 9 13 13 C 1.37876 * 120.00537 * 274.86586 * 11 10 9 14 14 N 1.31513 * 119.99676 * 355.70211 * 13 11 10 15 15 Si 1.86795 * 120.00029 * 175.70080 * 13 11 10 16 16 H 1.48497 * 109.47445 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47014 * 120.00233 * 15 13 11 18 18 H 1.48503 * 109.46998 * 239.99835 * 15 13 11 19 19 C 1.52996 * 117.49933 * 90.20440 * 10 9 8 20 20 C 1.53004 * 117.49731 * 158.86646 * 10 9 8 21 21 C 1.53048 * 109.53400 * 61.36536 * 7 6 5 22 22 C 1.46917 * 120.63301 * 185.00693 * 4 2 1 23 23 H 1.09006 * 109.47015 * 264.59258 * 1 2 3 24 24 H 1.09000 * 109.47528 * 24.59948 * 1 2 3 25 25 H 1.09006 * 109.46496 * 144.60298 * 1 2 3 26 26 H 1.08996 * 109.58657 * 113.84710 * 5 4 2 27 27 H 1.08997 * 109.70421 * 353.48814 * 5 4 2 28 28 H 1.08999 * 109.49838 * 185.41293 * 6 5 4 29 29 H 1.09006 * 109.52565 * 65.33693 * 6 5 4 30 30 H 1.08991 * 109.46004 * 301.36621 * 7 6 5 31 31 H 1.00897 * 111.00447 * 278.95794 * 8 7 6 32 32 H 1.09002 * 109.46746 * 65.39887 * 9 8 7 33 33 H 1.08999 * 109.46971 * 305.40099 * 9 8 7 34 34 H 0.96999 * 119.99895 * 184.99852 * 14 13 11 35 35 H 1.09003 * 117.49999 * 215.00076 * 19 10 9 36 36 H 1.08998 * 117.50125 * 0.02562 * 19 10 9 37 37 H 1.08992 * 117.49901 * 359.97438 * 20 10 9 38 38 H 1.09002 * 117.49907 * 144.97737 * 20 10 9 39 39 H 1.09002 * 109.49356 * 58.59363 * 21 7 6 40 40 H 1.08996 * 109.49547 * 178.68210 * 21 7 6 41 41 H 1.08998 * 109.58707 * 246.15877 * 22 4 2 42 42 H 1.08999 * 109.58770 * 6.57900 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4646 -2.4453 -0.1087 6 6 1.8845 -3.3469 1.0564 7 6 3.4090 -3.4801 1.0695 8 7 3.8132 -4.3708 2.1655 9 6 5.1137 -4.9938 1.8852 10 6 5.4375 -6.0126 2.9797 11 6 5.4205 -5.4799 4.3893 12 1 4.5301 -5.5778 4.9927 13 6 6.5432 -4.8725 4.9104 14 7 7.6549 -4.8331 4.2090 15 14 6.4851 -4.1057 6.6127 16 1 5.1284 -4.2833 7.1897 17 1 7.4854 -4.7677 7.4882 18 1 6.7958 -2.6569 6.5138 19 6 4.9717 -7.4538 2.7634 20 6 6.4576 -7.1041 2.6493 21 6 4.0414 -2.1013 1.2734 22 6 3.6459 -1.1856 0.1109 23 1 -0.3633 -0.0968 1.0231 24 1 -0.3634 0.9344 -0.4278 25 1 -0.3632 -0.8378 -0.5953 26 1 1.7182 -2.9267 -1.0531 27 1 0.3898 -2.2690 -0.0654 28 1 1.4343 -4.3321 0.9346 29 1 1.5495 -2.9076 1.9961 30 1 3.7453 -3.8966 0.1201 31 1 3.8309 -3.8768 3.0451 32 1 5.8871 -4.2260 1.8632 33 1 5.0745 -5.4979 0.9196 34 1 8.4642 -4.4711 4.6026 35 1 4.6528 -8.0167 3.6407 36 1 4.4348 -7.6762 1.8413 37 1 6.8976 -7.0965 1.6522 38 1 7.1165 -7.4366 3.4514 39 1 3.6863 -1.6733 2.2109 40 1 5.1264 -2.2000 1.3061 41 1 4.0774 -1.5642 -0.8157 42 1 4.0108 -0.1761 0.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689531700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:48 Heat of formation + Delta-G solvation = -17.049028 kcal Electronic energy + Delta-G solvation = -20811.210806 eV Core-core repulsion = 17791.486487 eV Total energy + Delta-G solvation = -3019.724319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17321 -37.89847 -36.56873 -34.41316 -31.91940 -31.65233 -30.77317 -29.11749 -25.88628 -25.01513 -23.14050 -22.90678 -20.96863 -20.67118 -19.33562 -18.74969 -17.19688 -15.97125 -15.90122 -15.52081 -14.65259 -14.60313 -14.45664 -14.13430 -13.92667 -13.67672 -13.35941 -12.91862 -12.75416 -12.53373 -12.18357 -12.01207 -11.82450 -11.48659 -11.23517 -11.15422 -10.98608 -10.90315 -10.61157 -10.47104 -10.36846 -10.08901 -9.84521 -9.32609 -8.85753 -8.73059 -8.41264 -8.05814 -7.47864 -6.02426 -4.09402 2.54682 2.95991 3.25953 3.35612 3.38980 4.38959 4.46837 4.65662 4.77981 4.95277 5.06071 5.11813 5.17901 5.25756 5.31486 5.35336 5.44214 5.54440 5.60980 5.71162 5.83767 5.84620 6.01707 6.09029 6.18456 6.25841 6.41370 6.45342 6.52645 6.59278 6.81190 6.84716 6.93118 7.19743 7.34724 7.47419 7.59788 7.88036 7.99925 8.09529 8.27112 8.50537 8.94635 9.56357 11.04677 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.004825 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.843287 B = 5802.069530 C = 6451.257934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.511 3.489 3 O -0.554 6.554 4 N -0.611 5.611 5 C 0.105 3.895 6 C -0.122 4.122 7 C 0.087 3.913 8 N -0.673 5.673 9 C 0.107 3.893 10 C 0.047 3.953 11 C -0.488 4.488 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.880 5.880 15 Si 0.885 3.115 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.204 4.204 20 C -0.157 4.157 21 C -0.164 4.164 22 C 0.115 3.885 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.350 0.650 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 4.311 -9.183 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.432 6.432 4 N -0.344 5.344 5 C -0.019 4.019 6 C -0.160 4.160 7 C -0.024 4.024 8 N -0.303 5.303 9 C -0.022 4.022 10 C 0.047 3.953 11 C -0.526 4.526 12 H 0.079 0.921 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.712 3.288 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.241 4.241 20 C -0.195 4.195 21 C -0.204 4.204 22 C -0.008 4.008 23 H 0.112 0.888 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.170 0.830 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.978 4.438 -9.421 15.872 hybrid contribution 0.853 1.003 1.129 1.735 sum -11.125 5.441 -8.292 14.903 Atomic orbital electron populations 1.21966 0.92074 1.04728 1.04691 1.20794 0.90600 0.83116 0.75527 1.90700 1.70815 1.31198 1.50537 1.48214 1.07618 1.06192 1.72425 1.21895 0.96899 0.83665 0.99404 1.21907 0.96636 0.99682 0.97824 1.21523 0.94003 0.90402 0.96451 1.60521 1.31614 1.33930 1.04262 1.21438 0.87950 0.96571 0.96265 1.18762 0.97283 0.85083 0.94207 1.20479 0.98689 1.36955 0.96498 0.92146 1.24999 0.95664 0.95701 0.97011 1.70013 0.99975 1.45605 1.36135 0.86655 0.78185 0.79129 0.84783 1.19649 1.21119 1.21108 1.22915 0.97796 1.03460 0.99952 1.22492 0.90761 1.06864 0.99389 1.22708 1.02045 0.97148 0.98520 1.21563 0.79198 1.01521 0.98496 0.88844 0.89195 0.89827 0.91290 0.89478 0.89912 0.91537 0.91215 0.82995 0.95232 0.94419 0.93203 0.90925 0.91932 0.92406 0.90012 0.91447 0.90378 0.91668 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.42 36.01 0.34 -1.07 16 2 C 0.51 6.52 7.80 -10.99 -0.09 6.44 16 3 O -0.55 -9.47 16.53 5.56 0.09 -9.37 16 4 N -0.61 -7.28 2.97 -172.78 -0.51 -7.80 16 5 C 0.10 0.97 6.27 -3.71 -0.02 0.95 16 6 C -0.12 -1.41 5.69 -26.61 -0.15 -1.56 16 7 C 0.09 1.26 2.43 -67.67 -0.16 1.10 16 8 N -0.67 -12.35 6.17 -106.68 -0.66 -13.01 16 9 C 0.11 2.26 5.44 -3.83 -0.02 2.24 16 10 C 0.05 1.13 1.72 -155.66 -0.27 0.86 16 11 C -0.49 -12.75 7.98 -34.44 -0.27 -13.03 16 12 H 0.06 1.61 7.82 -52.49 -0.41 1.19 16 13 C 0.07 1.83 5.43 -17.82 -0.10 1.74 16 14 N -0.88 -24.36 12.65 55.43 0.70 -23.66 16 15 Si 0.88 20.70 29.54 -169.99 -5.02 15.68 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.20 -4.48 9.93 -26.69 -0.27 -4.74 16 20 C -0.16 -3.69 9.18 -26.69 -0.24 -3.93 16 21 C -0.16 -2.39 5.33 -26.61 -0.14 -2.53 16 22 C 0.12 1.52 6.42 -3.72 -0.02 1.49 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.48 6.28 -51.93 -0.33 0.15 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.59 5.50 -51.93 -0.29 0.30 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 31 H 0.35 6.98 7.76 -39.29 -0.31 6.67 16 32 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 33 H 0.04 0.75 7.88 -51.93 -0.41 0.35 16 34 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.25 7.52 -51.93 -0.39 0.86 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.29 7.04 -51.93 -0.37 0.92 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -29.82 335.13 -8.84 -38.67 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.07 Total: 6.50 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.42 Total: -12.05 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.47 Total: -44.47 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.82 -8.84 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689531700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.617 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds