Wall clock time and date at job start Mon Mar 30 2020 00:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99410 * 2 1 4 4 N 1.34772 * 120.00492 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.62742 * 4.98240 * 4 2 1 6 6 C 1.53189 * 108.77126 * 233.63018 * 5 4 2 7 7 C 1.53042 * 109.31736 * 305.36332 * 6 5 4 8 8 N 1.46900 * 109.46306 * 181.38496 * 7 6 5 9 9 C 1.46899 * 110.99947 * 154.99983 * 8 7 6 10 10 C 1.52994 * 109.47184 * 185.39842 * 9 8 7 11 11 C 1.50703 * 115.54979 * 304.52936 * 10 9 8 12 12 H 1.08002 * 119.99153 * 95.14025 * 11 10 9 13 13 C 1.37876 * 120.00537 * 274.86586 * 11 10 9 14 14 N 1.31513 * 119.99676 * 355.70211 * 13 11 10 15 15 Si 1.86795 * 120.00029 * 175.70080 * 13 11 10 16 16 H 1.48497 * 109.47445 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47014 * 120.00233 * 15 13 11 18 18 H 1.48503 * 109.46998 * 239.99835 * 15 13 11 19 19 C 1.52996 * 117.49933 * 90.20440 * 10 9 8 20 20 C 1.53004 * 117.49731 * 158.86646 * 10 9 8 21 21 C 1.53048 * 109.53400 * 61.36536 * 7 6 5 22 22 C 1.46917 * 120.63301 * 185.00693 * 4 2 1 23 23 H 1.09006 * 109.47015 * 264.59258 * 1 2 3 24 24 H 1.09000 * 109.47528 * 24.59948 * 1 2 3 25 25 H 1.09006 * 109.46496 * 144.60298 * 1 2 3 26 26 H 1.08996 * 109.58657 * 113.84710 * 5 4 2 27 27 H 1.08997 * 109.70421 * 353.48814 * 5 4 2 28 28 H 1.08999 * 109.49838 * 185.41293 * 6 5 4 29 29 H 1.09006 * 109.52565 * 65.33693 * 6 5 4 30 30 H 1.08991 * 109.46004 * 301.36621 * 7 6 5 31 31 H 1.00897 * 111.00447 * 278.95794 * 8 7 6 32 32 H 1.09002 * 109.46746 * 65.39887 * 9 8 7 33 33 H 1.08999 * 109.46971 * 305.40099 * 9 8 7 34 34 H 0.96999 * 119.99895 * 184.99852 * 14 13 11 35 35 H 1.09003 * 117.49999 * 215.00076 * 19 10 9 36 36 H 1.08998 * 117.50125 * 0.02562 * 19 10 9 37 37 H 1.08992 * 117.49901 * 359.97438 * 20 10 9 38 38 H 1.09002 * 117.49907 * 144.97737 * 20 10 9 39 39 H 1.09002 * 109.49356 * 58.59363 * 21 7 6 40 40 H 1.08996 * 109.49547 * 178.68210 * 21 7 6 41 41 H 1.08998 * 109.58707 * 246.15877 * 22 4 2 42 42 H 1.08999 * 109.58770 * 6.57900 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4646 -2.4453 -0.1087 6 6 1.8845 -3.3469 1.0564 7 6 3.4090 -3.4801 1.0695 8 7 3.8132 -4.3708 2.1655 9 6 5.1137 -4.9938 1.8852 10 6 5.4375 -6.0126 2.9797 11 6 5.4205 -5.4799 4.3893 12 1 4.5301 -5.5778 4.9927 13 6 6.5432 -4.8725 4.9104 14 7 7.6549 -4.8331 4.2090 15 14 6.4851 -4.1057 6.6127 16 1 5.1284 -4.2833 7.1897 17 1 7.4854 -4.7677 7.4882 18 1 6.7958 -2.6569 6.5138 19 6 4.9717 -7.4538 2.7634 20 6 6.4576 -7.1041 2.6493 21 6 4.0414 -2.1013 1.2734 22 6 3.6459 -1.1856 0.1109 23 1 -0.3633 -0.0968 1.0231 24 1 -0.3634 0.9344 -0.4278 25 1 -0.3632 -0.8378 -0.5953 26 1 1.7182 -2.9267 -1.0531 27 1 0.3898 -2.2690 -0.0654 28 1 1.4343 -4.3321 0.9346 29 1 1.5495 -2.9076 1.9961 30 1 3.7453 -3.8966 0.1201 31 1 3.8309 -3.8768 3.0451 32 1 5.8871 -4.2260 1.8632 33 1 5.0745 -5.4979 0.9196 34 1 8.4642 -4.4711 4.6026 35 1 4.6528 -8.0167 3.6407 36 1 4.4348 -7.6762 1.8413 37 1 6.8976 -7.0965 1.6522 38 1 7.1165 -7.4366 3.4514 39 1 3.6863 -1.6733 2.2109 40 1 5.1264 -2.2000 1.3061 41 1 4.0774 -1.5642 -0.8157 42 1 4.0108 -0.1761 0.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689531700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:47 Heat of formation + Delta-G solvation = -35.870663 kcal Electronic energy + Delta-G solvation = -20812.026973 eV Core-core repulsion = 17791.486487 eV Total energy + Delta-G solvation = -3020.540486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18026 -39.21774 -38.15253 -35.71219 -33.94665 -32.68326 -31.90822 -30.00366 -27.70860 -26.56420 -24.20931 -24.13935 -22.78180 -21.83464 -20.98588 -19.94321 -18.17109 -17.87747 -16.85220 -16.62009 -16.54641 -15.98113 -15.84670 -15.57993 -15.03381 -14.94031 -14.47048 -14.31350 -13.93416 -13.64073 -13.47630 -13.14473 -12.95316 -12.91825 -12.89078 -12.79386 -12.61679 -12.27066 -12.19866 -11.95344 -11.76535 -11.55154 -11.16392 -10.84292 -10.80297 -10.36184 -9.93529 -9.68834 -9.02075 -8.07143 -6.18168 1.37526 1.42456 1.51461 1.59683 2.05530 2.42504 3.20455 3.31012 3.62840 3.74274 3.84487 3.94079 4.09946 4.24135 4.28645 4.40024 4.46851 4.54833 4.59054 4.64550 4.68866 4.73707 4.77701 4.81040 4.89088 4.98595 5.03968 5.07792 5.11389 5.13654 5.24444 5.33496 5.39662 5.56320 5.67049 5.73090 5.82968 6.41088 6.44428 6.53376 6.67875 6.91421 7.14569 7.49757 8.99460 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.004825 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.843287 B = 5802.069530 C = 6451.257934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.608 6.608 4 N -0.611 5.611 5 C 0.107 3.893 6 C -0.114 4.114 7 C 0.087 3.913 8 N -0.670 5.670 9 C 0.121 3.879 10 C 0.023 3.977 11 C -0.493 4.493 12 H 0.052 0.948 13 C 0.026 3.974 14 N -0.909 5.909 15 Si 0.941 3.059 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.287 1.287 19 C -0.180 4.180 20 C -0.165 4.165 21 C -0.154 4.154 22 C 0.120 3.880 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.339 0.661 32 H -0.002 1.002 33 H 0.052 0.948 34 H 0.256 0.744 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 3.795 -10.150 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.292 3.708 3 O -0.490 6.490 4 N -0.343 5.343 5 C -0.015 4.015 6 C -0.152 4.152 7 C -0.024 4.024 8 N -0.299 5.299 9 C -0.008 4.008 10 C 0.022 3.978 11 C -0.531 4.531 12 H 0.070 0.930 13 C -0.174 4.174 14 N -0.547 5.547 15 Si 0.768 3.232 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.213 1.213 19 C -0.217 4.217 20 C -0.203 4.203 21 C -0.194 4.194 22 C -0.004 4.004 23 H 0.126 0.874 24 H 0.111 0.889 25 H 0.134 0.866 26 H 0.105 0.895 27 H 0.142 0.858 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.665 3.888 -10.396 18.392 hybrid contribution 1.679 1.122 1.424 2.471 sum -12.986 5.010 -8.971 16.560 Atomic orbital electron populations 1.22000 0.87919 1.06373 1.06258 1.21738 0.92577 0.82306 0.74164 1.90677 1.72256 1.33097 1.52994 1.48351 1.06941 1.07328 1.71714 1.22118 0.98637 0.81772 0.98989 1.21845 0.93789 1.00920 0.98693 1.21675 0.96302 0.89196 0.95189 1.60557 1.29605 1.34901 1.04866 1.21178 0.88452 0.95281 0.95908 1.18957 0.98273 0.86501 0.94072 1.20682 0.98172 1.36559 0.97681 0.92971 1.25601 0.95486 0.96270 1.00063 1.70115 1.00388 1.46764 1.37470 0.85767 0.78230 0.78006 0.81224 1.18957 1.21147 1.21309 1.22896 0.96372 1.01532 1.00907 1.22387 0.91377 1.07534 0.99018 1.22556 1.00555 0.97813 0.98522 1.21376 0.80809 0.99916 0.98264 0.87368 0.88878 0.86640 0.89508 0.85821 0.88735 0.92265 0.90613 0.84320 0.98360 0.92964 0.93462 0.91199 0.89348 0.91297 0.92705 0.92961 0.92699 0.90352 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.42 71.24 0.67 -1.42 16 2 C 0.50 11.95 7.80 87.66 0.68 12.64 16 3 O -0.61 -20.84 16.53 -3.03 -0.05 -20.89 16 4 N -0.61 -13.32 2.97 -818.95 -2.43 -15.76 16 5 C 0.11 1.55 6.27 86.36 0.54 2.09 16 6 C -0.11 -2.29 5.69 30.67 0.17 -2.12 16 7 C 0.09 2.39 2.43 44.95 0.11 2.50 16 8 N -0.67 -24.11 6.17 -491.44 -3.03 -27.14 16 9 C 0.12 5.11 5.44 86.30 0.47 5.57 16 10 C 0.02 1.07 1.72 -52.93 -0.09 0.98 16 11 C -0.49 -25.92 7.98 25.60 0.20 -25.72 16 12 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 13 C 0.03 1.37 5.43 84.65 0.46 1.83 16 14 N -0.91 -51.42 12.65 21.45 0.27 -51.15 16 15 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 C -0.18 -7.62 9.93 30.62 0.30 -7.32 16 20 C -0.16 -7.75 9.18 30.62 0.28 -7.46 16 21 C -0.15 -4.54 5.33 30.67 0.16 -4.38 16 22 C 0.12 3.13 6.42 86.36 0.55 3.69 16 23 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.12 0.70 6.28 -2.38 -0.01 0.68 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.12 0.97 5.50 -2.39 -0.01 0.95 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 2.03 7.71 -2.39 -0.02 2.01 16 31 H 0.34 13.56 7.76 -89.70 -0.70 12.86 16 32 H 0.00 -0.09 7.54 -2.39 -0.02 -0.11 16 33 H 0.05 2.02 7.88 -2.39 -0.02 2.00 16 34 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 35 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.05 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.85 7.52 -2.39 -0.02 1.83 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 2.05 7.04 -2.39 -0.02 2.03 16 Total: -1.00 -66.27 335.13 1.60 -64.67 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.30 Total: 24.28 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.52 Total: -19.11 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -5.20 Total: -94.05 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -66.27 1.60 -64.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689531700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.795 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds