Wall clock time and date at job start Mon Mar 30 2020 00:52:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 O 1.21280 * 119.99410 * 2 1
4 4 N 1.34772 * 120.00492 * 179.97438 * 2 1 3
5 5 C 1.46932 * 120.62742 * 4.98240 * 4 2 1
6 6 C 1.53189 * 108.77126 * 233.63018 * 5 4 2
7 7 C 1.53042 * 109.31736 * 305.36332 * 6 5 4
8 8 N 1.46900 * 109.46306 * 181.38496 * 7 6 5
9 9 C 1.46899 * 110.99947 * 154.99983 * 8 7 6
10 10 C 1.52994 * 109.47184 * 185.39842 * 9 8 7
11 11 C 1.50703 * 115.54979 * 304.52936 * 10 9 8
12 12 H 1.08002 * 119.99153 * 95.14025 * 11 10 9
13 13 C 1.37876 * 120.00537 * 274.86586 * 11 10 9
14 14 N 1.31513 * 119.99676 * 355.70211 * 13 11 10
15 15 Si 1.86795 * 120.00029 * 175.70080 * 13 11 10
16 16 H 1.48497 * 109.47445 * 0.02562 * 15 13 11
17 17 H 1.48500 * 109.47014 * 120.00233 * 15 13 11
18 18 H 1.48503 * 109.46998 * 239.99835 * 15 13 11
19 19 C 1.52996 * 117.49933 * 90.20440 * 10 9 8
20 20 C 1.53004 * 117.49731 * 158.86646 * 10 9 8
21 21 C 1.53048 * 109.53400 * 61.36536 * 7 6 5
22 22 C 1.46917 * 120.63301 * 185.00693 * 4 2 1
23 23 H 1.09006 * 109.47015 * 264.59258 * 1 2 3
24 24 H 1.09000 * 109.47528 * 24.59948 * 1 2 3
25 25 H 1.09006 * 109.46496 * 144.60298 * 1 2 3
26 26 H 1.08996 * 109.58657 * 113.84710 * 5 4 2
27 27 H 1.08997 * 109.70421 * 353.48814 * 5 4 2
28 28 H 1.08999 * 109.49838 * 185.41293 * 6 5 4
29 29 H 1.09006 * 109.52565 * 65.33693 * 6 5 4
30 30 H 1.08991 * 109.46004 * 301.36621 * 7 6 5
31 31 H 1.00897 * 111.00447 * 278.95794 * 8 7 6
32 32 H 1.09002 * 109.46746 * 65.39887 * 9 8 7
33 33 H 1.08999 * 109.46971 * 305.40099 * 9 8 7
34 34 H 0.96999 * 119.99895 * 184.99852 * 14 13 11
35 35 H 1.09003 * 117.49999 * 215.00076 * 19 10 9
36 36 H 1.08998 * 117.50125 * 0.02562 * 19 10 9
37 37 H 1.08992 * 117.49901 * 359.97438 * 20 10 9
38 38 H 1.09002 * 117.49907 * 144.97737 * 20 10 9
39 39 H 1.09002 * 109.49356 * 58.59363 * 21 7 6
40 40 H 1.08996 * 109.49547 * 178.68210 * 21 7 6
41 41 H 1.08998 * 109.58707 * 246.15877 * 22 4 2
42 42 H 1.08999 * 109.58770 * 6.57900 * 22 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1133 1.0504 0.0000
4 7 2.1810 -1.1671 0.0005
5 6 1.4646 -2.4453 -0.1087
6 6 1.8845 -3.3469 1.0564
7 6 3.4090 -3.4801 1.0695
8 7 3.8132 -4.3708 2.1655
9 6 5.1137 -4.9938 1.8852
10 6 5.4375 -6.0126 2.9797
11 6 5.4205 -5.4799 4.3893
12 1 4.5301 -5.5778 4.9927
13 6 6.5432 -4.8725 4.9104
14 7 7.6549 -4.8331 4.2090
15 14 6.4851 -4.1057 6.6127
16 1 5.1284 -4.2833 7.1897
17 1 7.4854 -4.7677 7.4882
18 1 6.7958 -2.6569 6.5138
19 6 4.9717 -7.4538 2.7634
20 6 6.4576 -7.1041 2.6493
21 6 4.0414 -2.1013 1.2734
22 6 3.6459 -1.1856 0.1109
23 1 -0.3633 -0.0968 1.0231
24 1 -0.3634 0.9344 -0.4278
25 1 -0.3632 -0.8378 -0.5953
26 1 1.7182 -2.9267 -1.0531
27 1 0.3898 -2.2690 -0.0654
28 1 1.4343 -4.3321 0.9346
29 1 1.5495 -2.9076 1.9961
30 1 3.7453 -3.8966 0.1201
31 1 3.8309 -3.8768 3.0451
32 1 5.8871 -4.2260 1.8632
33 1 5.0745 -5.4979 0.9196
34 1 8.4642 -4.4711 4.6026
35 1 4.6528 -8.0167 3.6407
36 1 4.4348 -7.6762 1.8413
37 1 6.8976 -7.0965 1.6522
38 1 7.1165 -7.4366 3.4514
39 1 3.6863 -1.6733 2.2109
40 1 5.1264 -2.2000 1.3061
41 1 4.0774 -1.5642 -0.8157
42 1 4.0108 -0.1761 0.3004
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689531700.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:52:47
Heat of formation + Delta-G solvation = -35.870663 kcal
Electronic energy + Delta-G solvation = -20812.026973 eV
Core-core repulsion = 17791.486487 eV
Total energy + Delta-G solvation = -3020.540486 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.18026 -39.21774 -38.15253 -35.71219 -33.94665 -32.68326 -31.90822 -30.00366
-27.70860 -26.56420 -24.20931 -24.13935 -22.78180 -21.83464 -20.98588 -19.94321
-18.17109 -17.87747 -16.85220 -16.62009 -16.54641 -15.98113 -15.84670 -15.57993
-15.03381 -14.94031 -14.47048 -14.31350 -13.93416 -13.64073 -13.47630 -13.14473
-12.95316 -12.91825 -12.89078 -12.79386 -12.61679 -12.27066 -12.19866 -11.95344
-11.76535 -11.55154 -11.16392 -10.84292 -10.80297 -10.36184 -9.93529 -9.68834
-9.02075 -8.07143 -6.18168 1.37526 1.42456 1.51461 1.59683 2.05530
2.42504 3.20455 3.31012 3.62840 3.74274 3.84487 3.94079 4.09946
4.24135 4.28645 4.40024 4.46851 4.54833 4.59054 4.64550 4.68866
4.73707 4.77701 4.81040 4.89088 4.98595 5.03968 5.07792 5.11389
5.13654 5.24444 5.33496 5.39662 5.56320 5.67049 5.73090 5.82968
6.41088 6.44428 6.53376 6.67875 6.91421 7.14569 7.49757 8.99460
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.022114 B = 0.004825 C = 0.004339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.843287 B = 5802.069530 C = 6451.257934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.501 3.499
3 O -0.608 6.608
4 N -0.611 5.611
5 C 0.107 3.893
6 C -0.114 4.114
7 C 0.087 3.913
8 N -0.670 5.670
9 C 0.121 3.879
10 C 0.023 3.977
11 C -0.493 4.493
12 H 0.052 0.948
13 C 0.026 3.974
14 N -0.909 5.909
15 Si 0.941 3.059
16 H -0.265 1.265
17 H -0.285 1.285
18 H -0.287 1.287
19 C -0.180 4.180
20 C -0.165 4.165
21 C -0.154 4.154
22 C 0.120 3.880
23 H 0.108 0.892
24 H 0.092 0.908
25 H 0.115 0.885
26 H 0.087 0.913
27 H 0.124 0.876
28 H 0.094 0.906
29 H 0.059 0.941
30 H 0.076 0.924
31 H 0.339 0.661
32 H -0.002 1.002
33 H 0.052 0.948
34 H 0.256 0.744
35 H 0.069 0.931
36 H 0.088 0.912
37 H 0.069 0.931
38 H 0.054 0.946
39 H 0.052 0.948
40 H 0.054 0.946
41 H 0.078 0.922
42 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.771 3.795 -10.150 18.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.292 3.708
3 O -0.490 6.490
4 N -0.343 5.343
5 C -0.015 4.015
6 C -0.152 4.152
7 C -0.024 4.024
8 N -0.299 5.299
9 C -0.008 4.008
10 C 0.022 3.978
11 C -0.531 4.531
12 H 0.070 0.930
13 C -0.174 4.174
14 N -0.547 5.547
15 Si 0.768 3.232
16 H -0.190 1.190
17 H -0.211 1.211
18 H -0.213 1.213
19 C -0.217 4.217
20 C -0.203 4.203
21 C -0.194 4.194
22 C -0.004 4.004
23 H 0.126 0.874
24 H 0.111 0.889
25 H 0.134 0.866
26 H 0.105 0.895
27 H 0.142 0.858
28 H 0.113 0.887
29 H 0.077 0.923
30 H 0.094 0.906
31 H 0.157 0.843
32 H 0.016 0.984
33 H 0.070 0.930
34 H 0.065 0.935
35 H 0.088 0.912
36 H 0.107 0.893
37 H 0.087 0.913
38 H 0.073 0.927
39 H 0.070 0.930
40 H 0.073 0.927
41 H 0.096 0.904
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -14.665 3.888 -10.396 18.392
hybrid contribution 1.679 1.122 1.424 2.471
sum -12.986 5.010 -8.971 16.560
Atomic orbital electron populations
1.22000 0.87919 1.06373 1.06258 1.21738 0.92577 0.82306 0.74164
1.90677 1.72256 1.33097 1.52994 1.48351 1.06941 1.07328 1.71714
1.22118 0.98637 0.81772 0.98989 1.21845 0.93789 1.00920 0.98693
1.21675 0.96302 0.89196 0.95189 1.60557 1.29605 1.34901 1.04866
1.21178 0.88452 0.95281 0.95908 1.18957 0.98273 0.86501 0.94072
1.20682 0.98172 1.36559 0.97681 0.92971 1.25601 0.95486 0.96270
1.00063 1.70115 1.00388 1.46764 1.37470 0.85767 0.78230 0.78006
0.81224 1.18957 1.21147 1.21309 1.22896 0.96372 1.01532 1.00907
1.22387 0.91377 1.07534 0.99018 1.22556 1.00555 0.97813 0.98522
1.21376 0.80809 0.99916 0.98264 0.87368 0.88878 0.86640 0.89508
0.85821 0.88735 0.92265 0.90613 0.84320 0.98360 0.92964 0.93462
0.91199 0.89348 0.91297 0.92705 0.92961 0.92699 0.90352 0.91445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.09 9.42 71.24 0.67 -1.42 16
2 C 0.50 11.95 7.80 87.66 0.68 12.64 16
3 O -0.61 -20.84 16.53 -3.03 -0.05 -20.89 16
4 N -0.61 -13.32 2.97 -818.95 -2.43 -15.76 16
5 C 0.11 1.55 6.27 86.36 0.54 2.09 16
6 C -0.11 -2.29 5.69 30.67 0.17 -2.12 16
7 C 0.09 2.39 2.43 44.95 0.11 2.50 16
8 N -0.67 -24.11 6.17 -491.44 -3.03 -27.14 16
9 C 0.12 5.11 5.44 86.30 0.47 5.57 16
10 C 0.02 1.07 1.72 -52.93 -0.09 0.98 16
11 C -0.49 -25.92 7.98 25.60 0.20 -25.72 16
12 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16
13 C 0.03 1.37 5.43 84.65 0.46 1.83 16
14 N -0.91 -51.42 12.65 21.45 0.27 -51.15 16
15 Si 0.94 43.07 29.54 68.60 2.03 45.10 16
16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16
18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16
19 C -0.18 -7.62 9.93 30.62 0.30 -7.32 16
20 C -0.16 -7.75 9.18 30.62 0.28 -7.46 16
21 C -0.15 -4.54 5.33 30.67 0.16 -4.38 16
22 C 0.12 3.13 6.42 86.36 0.55 3.69 16
23 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16
24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
25 H 0.12 0.70 6.28 -2.38 -0.01 0.68 16
26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
27 H 0.12 0.97 5.50 -2.39 -0.01 0.95 16
28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16
30 H 0.08 2.03 7.71 -2.39 -0.02 2.01 16
31 H 0.34 13.56 7.76 -89.70 -0.70 12.86 16
32 H 0.00 -0.09 7.54 -2.39 -0.02 -0.11 16
33 H 0.05 2.02 7.88 -2.39 -0.02 2.00 16
34 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16
35 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16
36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16
37 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16
38 H 0.05 2.84 8.14 -2.39 -0.02 2.82 16
39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
40 H 0.05 1.85 7.52 -2.39 -0.02 1.83 16
41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
42 H 0.07 2.05 7.04 -2.39 -0.02 2.03 16
Total: -1.00 -66.27 335.13 1.60 -64.67
By element:
Atomic # 1 Polarization: 23.98 SS G_CDS: 0.30 Total: 24.28 kcal
Atomic # 6 Polarization: -23.63 SS G_CDS: 4.52 Total: -19.11 kcal
Atomic # 7 Polarization: -88.85 SS G_CDS: -5.20 Total: -94.05 kcal
Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal
Total: -66.27 1.60 -64.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689531700.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.795 kcal
(2) G-P(sol) polarization free energy of solvation -66.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.871 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds