Wall clock time and date at job start Mon Mar 30 2020 01:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.50703 * 119.99652 * 2 1 4 4 N 1.46899 * 109.47418 * 94.74926 * 3 2 1 5 5 C 1.46892 * 111.00234 * 76.56730 * 4 3 2 6 6 C 1.46904 * 110.99722 * 200.52568 * 4 3 2 7 7 C 1.47099 * 120.00434 * 179.97438 * 2 1 3 8 8 O 1.21609 * 120.00313 * 260.47901 * 7 2 1 9 9 N 1.34778 * 119.99730 * 80.47881 * 7 2 1 10 10 C 1.46504 * 119.99902 * 184.21662 * 9 7 2 11 11 C 1.50702 * 109.47255 * 270.00014 * 10 9 7 12 12 H 1.08004 * 119.99551 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00215 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99645 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99925 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47534 * 59.99843 * 15 13 11 17 17 H 1.48506 * 109.47041 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47128 * 299.99653 * 15 13 11 19 19 C 1.46502 * 120.00243 * 4.22040 * 9 7 2 20 20 C 1.52992 * 109.47377 * 95.79418 * 19 9 7 21 21 C 1.52999 * 117.49981 * 242.89384 * 20 19 9 22 22 C 1.52998 * 60.00136 * 252.50995 * 21 20 19 23 23 H 1.07994 * 120.00154 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.99789 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46859 * 214.74582 * 3 2 1 26 26 H 1.08995 * 109.46976 * 334.74140 * 3 2 1 27 27 H 1.08998 * 109.47162 * 53.34315 * 5 4 3 28 28 H 1.08998 * 109.47050 * 173.34385 * 5 4 3 29 29 H 1.08999 * 109.47506 * 293.34148 * 5 4 3 30 30 H 1.09002 * 109.47206 * 64.29221 * 6 4 3 31 31 H 1.09000 * 109.46849 * 184.28941 * 6 4 3 32 32 H 1.08997 * 109.46803 * 304.28924 * 6 4 3 33 33 H 1.08997 * 109.47022 * 30.00096 * 10 9 7 34 34 H 1.08999 * 109.47239 * 150.00210 * 10 9 7 35 35 H 0.96996 * 119.99321 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.47115 * 215.79870 * 19 9 7 37 37 H 1.09000 * 109.46618 * 335.79227 * 19 9 7 38 38 H 1.08998 * 115.55073 * 28.60654 * 20 19 9 39 39 H 1.09003 * 117.49843 * 0.02562 * 21 20 19 40 40 H 1.09005 * 117.49719 * 145.01470 * 21 20 19 41 41 H 1.08995 * 117.49864 * 252.51048 * 22 21 20 42 42 H 1.09001 * 117.49464 * 107.48713 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0833 1.3052 0.0000 4 7 2.4275 1.6720 1.3802 5 6 3.5595 0.8744 1.8702 6 6 2.7105 3.1095 1.4878 7 6 2.0655 -1.2739 0.0006 8 8 2.5204 -1.7129 1.0394 9 7 2.2352 -1.9545 -1.1503 10 6 2.8864 -3.2667 -1.1360 11 6 4.3727 -3.0920 -1.3143 12 1 4.7904 -2.1024 -1.4265 13 6 5.1992 -4.1954 -1.3330 14 7 4.6905 -5.4004 -1.1958 15 14 7.0414 -3.9787 -1.5532 16 1 7.5780 -3.1473 -0.4460 17 1 7.7015 -5.3089 -1.5389 18 1 7.3093 -3.3078 -2.8507 19 6 1.7687 -1.3820 -2.4156 20 6 2.9298 -0.6696 -3.1120 21 6 2.8037 0.8395 -3.3304 22 6 2.6796 -0.1183 -4.5171 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 2.9963 1.1976 -0.5857 26 1 1.4601 2.0844 -0.4385 27 1 4.3911 0.9555 1.1703 28 1 3.8693 1.2453 2.8472 29 1 3.2580 -0.1695 1.9569 30 1 1.8078 3.6757 1.2580 31 1 3.0360 3.3407 2.5021 32 1 3.4974 3.3786 0.7834 33 1 2.6902 -3.7594 -0.1837 34 1 2.4923 -3.8768 -1.9487 35 1 5.2720 -6.1767 -1.2094 36 1 1.3931 -2.1784 -3.0581 37 1 0.9697 -0.6673 -2.2182 38 1 3.9219 -1.0661 -2.8962 39 1 1.8937 1.3248 -2.9776 40 1 3.7131 1.4362 -3.2581 41 1 3.5073 -0.1517 -5.2255 42 1 1.6878 -0.2631 -4.9453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764498223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:50 Heat of formation + Delta-G solvation = 20.888067 kcal Electronic energy + Delta-G solvation = -21483.204079 eV Core-core repulsion = 18465.124836 eV Total energy + Delta-G solvation = -3018.079243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48862 -37.28370 -36.83556 -34.33556 -33.37242 -32.30680 -27.85249 -27.33138 -26.75274 -26.21180 -23.68197 -22.23604 -22.00310 -20.86897 -20.20636 -17.90534 -16.52171 -16.35849 -15.53127 -15.13485 -15.05346 -14.85119 -14.66866 -14.23416 -14.01218 -13.55792 -13.16571 -12.67792 -12.36000 -12.29026 -12.05111 -11.95258 -11.69942 -11.42453 -11.31416 -11.25669 -11.21800 -11.02821 -10.72585 -10.59708 -10.35650 -9.86397 -9.68035 -9.52668 -9.24579 -8.74214 -8.42149 -8.16855 -7.67836 -6.03947 -4.07617 2.11957 3.30146 3.32613 3.35488 3.40472 3.92357 4.13764 4.30849 4.44395 4.91726 5.02851 5.13486 5.19242 5.25776 5.30281 5.39632 5.47814 5.50134 5.64878 5.67189 5.81025 5.83501 5.85380 5.90669 5.95327 5.97843 6.05245 6.14473 6.30921 6.50962 6.62724 6.76236 6.78327 7.08206 7.14609 7.23796 7.43416 7.55984 7.92570 8.23784 8.41393 8.89738 9.08662 9.56670 11.04368 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.007016 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.507999 B = 3989.977916 C = 4468.463620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.101 3.899 4 N -0.539 5.539 5 C 0.003 3.997 6 C 0.024 3.976 7 C 0.544 3.456 8 O -0.528 6.528 9 N -0.589 5.589 10 C 0.246 3.754 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.144 3.856 20 C -0.159 4.159 21 C -0.187 4.187 22 C -0.179 4.179 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 14.407 -2.789 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 C -0.026 4.026 4 N -0.262 5.262 5 C -0.145 4.145 6 C -0.125 4.125 7 C 0.330 3.670 8 O -0.406 6.406 9 N -0.319 5.319 10 C 0.127 3.873 11 C -0.559 4.559 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C 0.020 3.980 20 C -0.178 4.178 21 C -0.224 4.224 22 C -0.217 4.217 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.236 13.832 -1.933 15.730 hybrid contribution 1.880 0.312 -0.763 2.053 sum -5.356 14.145 -2.696 15.363 Atomic orbital electron populations 1.24139 0.94095 1.02173 0.98413 1.21631 0.95615 0.94695 1.01433 1.21007 0.98914 0.93247 0.89465 1.62038 1.39501 1.04121 1.20581 1.22899 0.90926 1.02070 0.98592 1.22419 0.99951 0.88888 1.01226 1.18380 0.80149 0.84173 0.84266 1.90682 1.49620 1.68649 1.31659 1.48212 1.57644 1.21199 1.04887 1.19307 0.92089 0.77385 0.98496 1.21358 0.91817 0.92867 1.49823 0.92456 1.24913 0.98735 0.95119 0.95249 1.69916 1.35530 0.97832 1.50084 0.86626 0.85344 0.77275 0.78583 1.20238 1.21167 1.20341 1.21019 0.94007 0.97290 0.85691 1.23059 1.02782 0.94480 0.97506 1.22995 1.02435 0.93342 1.03621 1.22866 1.02479 1.04838 0.91520 0.87463 0.88023 0.93224 0.90312 0.96027 0.92332 0.87180 0.91718 0.91533 0.95955 0.93933 0.94946 0.92701 0.90617 0.91123 0.85743 0.89275 0.89562 0.89162 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 13.16 28.91 0.38 -1.61 16 2 C -0.13 -2.10 3.52 -102.85 -0.36 -2.46 16 3 C 0.10 1.47 5.18 -4.98 -0.03 1.44 16 4 N -0.54 -8.10 4.93 -252.73 -1.25 -9.34 16 5 C 0.00 0.04 9.29 60.06 0.56 0.60 16 6 C 0.02 0.27 9.51 60.07 0.57 0.84 16 7 C 0.54 11.41 6.73 -12.67 -0.09 11.32 16 8 O -0.53 -13.28 13.84 5.27 0.07 -13.21 16 9 N -0.59 -12.34 2.46 -176.46 -0.43 -12.77 16 10 C 0.25 6.33 5.17 -5.19 -0.03 6.31 16 11 C -0.52 -14.39 8.66 -34.44 -0.30 -14.69 16 12 H 0.06 1.58 6.62 -52.48 -0.35 1.23 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 C 0.14 2.37 5.69 -4.04 -0.02 2.35 16 20 C -0.16 -2.55 5.95 -90.62 -0.54 -3.09 16 21 C -0.19 -2.40 9.63 -26.73 -0.26 -2.66 16 22 C -0.18 -2.30 10.25 -26.73 -0.27 -2.58 16 23 H 0.11 1.14 8.02 -52.49 -0.42 0.71 16 24 H 0.10 1.35 8.05 -52.48 -0.42 0.93 16 25 H 0.05 0.78 7.28 -51.93 -0.38 0.40 16 26 H 0.08 0.92 7.79 -51.93 -0.40 0.51 16 27 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 28 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 29 H 0.11 2.28 4.65 -51.93 -0.24 2.04 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 32 H 0.02 0.25 8.13 -51.93 -0.42 -0.18 16 33 H 0.04 1.24 7.48 -51.93 -0.39 0.85 16 34 H 0.03 0.85 7.95 -51.93 -0.41 0.43 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 37 H 0.07 0.98 5.68 -51.93 -0.30 0.69 16 38 H 0.12 2.47 6.15 -51.93 -0.32 2.15 16 39 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -31.41 342.10 -8.17 -39.58 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.95 Total: 2.04 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.48 Total: -2.57 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.94 Total: -47.77 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.41 -8.17 -39.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764498223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.465 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds